Rh6AG084300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001047
Physical Location & Seq
Forward (+)
12707217 .. 12707909
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG084300.1

Sequence Viewer

Length: 693 bp
ATGGCTACTGCTCATCTGGTAGCTAATCGTTTCTTTCTTGGTTTTGCTTTTGCTTTCTTGCTCGGAGCGCCGCCTTGGTATGGGCTCCCTGTGGTTACTGTTTGGGAGGGTAGTGTTGCCGTTTGGATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGCGCATCTGGGTTTTGGATCAGGGTCGTCTGCCTTCCGACGGTGATAGGGATTGTACAATCGATTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTAGTGTTGCCGGAGTGGGGTTGGCCAGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGCTGGATCTGCCCTTGATTCGTCTATTGATGGTGGTGGTAGCGACCGACGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCGGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTTTGTCTGGAGGCAGTGACGATTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGCGATAGCTTGCACGGCTGTGACGGAGTGCGTGCGGTGCCCTTAGCAATTTCGCCCTACTGGGCCAGCTGGGATGACGGCGACGGCAAAATTGCTGGGGAGGCTAGGGTTTCTCCTAAATTGGCTTGCTGGGCTCTAGGGTTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

24.11

Weight (kDa)

4.53

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 411
AciI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
AclWI GGATC 5 cut(s) 210, 329, 348, 373, 506
AcoI YGGCCR 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 241, 472
AfiI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
AjnI CCWGG 1 cut(s) 259
AleI CACNNNNGTG 2 cut(s) 537, 561
AluBI AGCT 4 cut(s) 23, 333, 552, 612
AluI AGCT 4 cut(s) 23, 333, 552, 612
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 5 cut(s) 210, 329, 348, 373, 506
AoxI GGCC 5 cut(s) 140, 170, 256, 303, 606
ApeKI GCWGC 2 cut(s) 271, 274
AspLEI GCGC 2 cut(s) 70, 189
AspS9I GGNCC 2 cut(s) 257, 606
AsuHPI GGTGA 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 585
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 2 cut(s) 87, 679
BarI GAAGNNNNNNTAC 2 cut(s) 437, 469
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 4 cut(s) 121, 176, 383, 452
BceAI ACGGC 6 cut(s) 104, 169, 550, 574, 637, 643
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 2 cut(s) 648, 680
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 4 cut(s) 71, 272, 275, 544
BlsI GCNGC 4 cut(s) 72, 273, 276, 545
Bme1390I CCNGG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 257, 606
BmiI GGNNCC 2 cut(s) 86, 582
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 2 cut(s) 198, 349
BmuI ACTGGG 1 cut(s) 613
BpiI GAAGAC 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 586
Bsa29I ATCGAT 2 cut(s) 246, 324
BsaJI CCNNGG 4 cut(s) 74, 259, 517, 532
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
Bse1I ACTGG 2 cut(s) 311, 608
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 261
BseCI ATCGAT 2 cut(s) 246, 324
BseDI CCNNGG 4 cut(s) 74, 259, 517, 532
BseGI GGATG 3 cut(s) 132, 187, 622
BseLI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
BseNI ACTGG 2 cut(s) 311, 608
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 2 cut(s) 258, 286
BseYI CCCAGC 3 cut(s) 612, 638, 672
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 5 cut(s) 142, 172, 258, 305, 608
BshNI GGYRCC 1 cut(s) 580
BshVI ATCGAT 2 cut(s) 246, 324
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 5 cut(s) 142, 172, 258, 305, 608
Bsp1286I GDGCHC 3 cut(s) 87, 585, 679
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BspACI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
BspANI GGCC 5 cut(s) 142, 172, 258, 305, 608
BspDI ATCGAT 2 cut(s) 246, 324
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 86, 582
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 5 cut(s) 210, 329, 348, 373, 506
BspT107I GGYRCC 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 2 cut(s) 311, 608
BssECI CCNNGG 4 cut(s) 74, 259, 517, 532
BssMI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BssT1I CCWWGG 2 cut(s) 74, 517
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 100, 227
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 4 cut(s) 554, 576, 610, 670
BstDEI CTNAG 2 cut(s) 174, 586
BstDSI CCRYGG 1 cut(s) 532
BstF5I GGATG 3 cut(s) 132, 187, 622
BstFNI CGCG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 189
BstKTI GATC 7 cut(s) 136, 205, 324, 328, 343, 368, 514
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 9 cut(s) 67, 368, 408, 543, 549, 558, 580, 644, 674
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 585
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 258, 286
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 340, 365
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 2 cut(s) 340, 365
Bsu15I ATCGAT 2 cut(s) 246, 324
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 5 cut(s) 142, 172, 258, 305, 608
BsuTUI ATCGAT 2 cut(s) 246, 324
BtgI CCRYGG 1 cut(s) 532
BtsCI GGATG 3 cut(s) 132, 187, 622
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
Cac8I GCNNGC 4 cut(s) 554, 576, 610, 670
CciI TCATGA 1 cut(s) 432
CfoI GCGC 2 cut(s) 70, 189
Cfr13I GGNCC 2 cut(s) 257, 606
ClaI ATCGAT 2 cut(s) 246, 324
CseI GACGC 2 cut(s) 266, 417
Csp6I GTAC 2 cut(s) 240, 471
CviAII CATG 1 cut(s) 433
CviQI GTAC 2 cut(s) 240, 471
DdeI CTNAG 2 cut(s) 174, 586
DpnI GATC 7 cut(s) 135, 204, 323, 327, 342, 367, 513
DpnII GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
EaeI YGGCCR 1 cut(s) 303
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 74, 517
Eco24I GRGCYC 2 cut(s) 87, 679
Eco57I CTGAAG 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 74, 517
EcoT38I GRGCYC 2 cut(s) 87, 679
ErhI CCWWGG 2 cut(s) 74, 517
FaeI CATG 1 cut(s) 436
FaiI YATR 2 cut(s) 81, 434
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 71, 272, 275, 544
FokI GGATG 3 cut(s) 139, 194, 629
FriOI GRGCYC 2 cut(s) 87, 679
Fsp4HI GCNGC 4 cut(s) 71, 272, 275, 544
FspBI CTAG 2 cut(s) 648, 680
GlaI GCGC 2 cut(s) 69, 188
GluI GCNGC 4 cut(s) 71, 272, 275, 544
GsaI CCCAGC 3 cut(s) 616, 642, 676
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 142, 172, 258, 305, 608
HapII CCGG 1 cut(s) 291
HgaI GACGC 2 cut(s) 266, 417
HhaI GCGC 2 cut(s) 70, 189
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 2 cut(s) 68, 187
HinP1I GCGC 2 cut(s) 68, 187
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 377, 506
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 4 cut(s) 65, 138, 223, 511
Hpy188III TCNNGA 2 cut(s) 433, 480
Hpy8I GTNNAC 1 cut(s) 687
Hpy99I CGWCG 4 cut(s) 227, 282, 411, 629
HpyAV CCTTC 2 cut(s) 228, 430
HpyCH4III ACNGT 2 cut(s) 100, 227
HpyCH4V TGCA 2 cut(s) 274, 556
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 368, 408, 543, 549, 558, 580, 644, 674
HpyF3I CTNAG 2 cut(s) 174, 586
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 2 cut(s) 68, 187
Kzo9I GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
LmnI GCTCC 2 cut(s) 65, 90
Lsp1109I GCAGC 2 cut(s) 258, 286
LweI GCATC 2 cut(s) 198, 349
MaeI CTAG 2 cut(s) 648, 680
MaeIII GTNAC 4 cut(s) 94, 488, 526, 563
MalI GATC 7 cut(s) 135, 204, 323, 327, 342, 367, 513
MboI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
MboII GAAGA 2 cut(s) 335, 445
MflI RGATCY 2 cut(s) 340, 365
MhlI GDGCHC 3 cut(s) 87, 585, 679
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 3 cut(s) 591, 633, 662
MluNI TGGCCA 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 100, 132, 331, 458, 476, 637
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MslI CAYNNNNRTG 2 cut(s) 537, 561
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 9 cut(s) 67, 368, 408, 543, 549, 558, 580, 644, 674
NdeII GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 86, 582
NmuCI GTSAC 3 cut(s) 488, 526, 563
OliI CACNNNNGTG 2 cut(s) 537, 561
PagI TCATGA 1 cut(s) 432
PfeI GAWTC 2 cut(s) 377, 506
PkrI GCNGC 4 cut(s) 72, 273, 276, 545
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 3 cut(s) 612, 638, 672
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 86, 582
PspPI GGNCC 2 cut(s) 257, 606
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 2 cut(s) 340, 365
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 2 cut(s) 241, 472
RsaNI GTAC 2 cut(s) 240, 471
RseI CAYNNNNRTG 2 cut(s) 537, 561
SatI GCNGC 4 cut(s) 71, 272, 275, 544
Sau3AI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
Sau96I GGNCC 2 cut(s) 257, 606
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 3 cut(s) 87, 585, 679
SetI ASST 8 cut(s) 25, 180, 335, 351, 469, 554, 614, 692
SfaNI GCATC 2 cut(s) 198, 349
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 537, 561
Sse9I AATT 3 cut(s) 591, 633, 662
SsiI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
SspMI CTAG 2 cut(s) 648, 680
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 74, 517
TaaI ACNGT 2 cut(s) 100, 227
TaqI TCGA 3 cut(s) 246, 324, 456
TaqII GACCGA 1 cut(s) 420
TasI AATT 3 cut(s) 591, 633, 662
TatI WGTACW 1 cut(s) 239
TauI GCSGC 2 cut(s) 73, 546
TfiI GAWTC 2 cut(s) 377, 506
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 3 cut(s) 488, 526, 563
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 3 cut(s) 488, 526, 563
TspDTI ATGAA 2 cut(s) 421, 449
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 1 cut(s) 493
XspI CTAG 2 cut(s) 648, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.