Rroxscaffold_7G00159290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001047
Physical Location & Seq
Forward (+)
2524699 .. 2525040
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159290.1

Sequence Viewer

Length: 342 bp
ATGCTTCCGGCCCTCGACGGTGGTGGAGCTTCGGTGGCTGTGGCGGAGCGGTGTTTGATTTCCGATCTCGTGCAGCCAAGTCGGGTGTTTCTCCTTGCTTGTCGGCTATGGGGATGGAGGTTTCCGGGCGACGGTGTTCCTACTTGGGCTCTCCGGGCTGGCGATCAACTTTGGGATAGGGATGCTCAACGTGGTGGCTATTTAGGCTATGCTAGTGATGGCCCGAAGGAGGTCAATAGGGGTGGCGGCGACGGCGACTTGCAACTTGGTAGCGGCTATGTTGTGGAGCAACCGGTTGCTAGGGTTTCGAAAATTTGGGTCATTGGGCTTAGCACGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.06

Weight (kDa)

4.98

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 4 cut(s) 44, 49, 246, 273
AcsI RAATTY 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 131, 229
AgeI ACCGGT 1 cut(s) 292
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AoxI GGCC 2 cut(s) 9, 220
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 10, 221
AsuC2I CCSGG 2 cut(s) 126, 155
AsuII TTCGAA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 1 cut(s) 68
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 108, 212
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcnI CCSGG 2 cut(s) 126, 155
BfaI CTAG 3 cut(s) 213, 300, 340
BisI GCNGC 3 cut(s) 74, 247, 274
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 3 cut(s) 75, 248, 275
Bme1390I CCNGG 2 cut(s) 126, 155
BmgT120I GGNCC 2 cut(s) 10, 221
BmrFI CCNGG 2 cut(s) 126, 155
BmsI GCATC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 126, 155
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 229
Bse118I RCCGGY 1 cut(s) 292
BseGI GGATG 2 cut(s) 119, 187
BseLI CCNNNNNNNGG 2 cut(s) 131, 229
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 2 cut(s) 11, 222
BshTI ACCGGT 1 cut(s) 292
BsiSI CCGG 4 cut(s) 8, 125, 154, 293
BslI CCNNNNNNNGG 2 cut(s) 131, 229
BsnI GGCC 2 cut(s) 11, 222
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 64, 163
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 4 cut(s) 44, 49, 246, 273
BspANI GGCC 2 cut(s) 11, 222
BspT104I TTCGAA 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssMI GATC 2 cut(s) 64, 163
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 20, 134
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 119, 187
BstKTI GATC 2 cut(s) 67, 166
BstMBI GATC 2 cut(s) 64, 163
BstMWI GCNNNNNNNGC 4 cut(s) 35, 155, 204, 252
BstSCI CCNGG 2 cut(s) 124, 153
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 11, 222
BtsCI GGATG 2 cut(s) 119, 187
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 10, 221
CspAI ACCGGT 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
DdeI CTNAG 1 cut(s) 329
DpnI GATC 2 cut(s) 66, 165
DpnII GATC 2 cut(s) 64, 163
EciI GGCGGA 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 151
FaiI YATR 3 cut(s) 109, 210, 279
Fnu4HI GCNGC 3 cut(s) 74, 247, 274
FokI GGATG 2 cut(s) 126, 194
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 74, 247, 274
FspBI CTAG 3 cut(s) 213, 300, 340
GluI GCNGC 3 cut(s) 74, 247, 274
HaeIII GGCC 2 cut(s) 11, 222
HapII CCGG 4 cut(s) 8, 125, 154, 293
HpaII CCGG 4 cut(s) 8, 125, 154, 293
Hpy188I TCNGA 1 cut(s) 64
Hpy99I CGWCG 3 cut(s) 20, 134, 254
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 2 cut(s) 20, 134
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 73, 262
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 155, 204, 252
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 190
Kzo9I GATC 2 cut(s) 64, 163
LmnI GCTCC 3 cut(s) 26, 46, 286
LpnPI CCDG 5 cut(s) 21, 138, 144, 167, 306
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 172
MaeI CTAG 3 cut(s) 213, 300, 340
MaeII ACGT 1 cut(s) 190
MalI GATC 2 cut(s) 66, 165
MbiI CCGCTC 1 cut(s) 49
MboI GATC 2 cut(s) 64, 163
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 312
MnlI CCTC 3 cut(s) 23, 111, 223
MspI CCGG 4 cut(s) 8, 125, 154, 293
MspR9I CCNGG 2 cut(s) 126, 155
MwoI GCNNNNNNNGC 4 cut(s) 35, 155, 204, 252
NciI CCSGG 2 cut(s) 126, 155
NdeII GATC 2 cut(s) 64, 163
NspV TTCGAA 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 292
PkrI GCNGC 3 cut(s) 75, 248, 275
PspPI GGNCC 2 cut(s) 10, 221
SatI GCNGC 3 cut(s) 74, 247, 274
Sau3AI GATC 2 cut(s) 64, 163
Sau96I GGNCC 2 cut(s) 10, 221
ScrFI CCNGG 2 cut(s) 126, 155
SduI GDGCHC 1 cut(s) 151
SetI ASST 4 cut(s) 31, 122, 193, 234
SfaNI GCATC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 308
Sse9I AATT 1 cut(s) 312
SsiI CCGC 4 cut(s) 44, 49, 246, 273
SspMI CTAG 3 cut(s) 213, 300, 340
StyD4I CCNGG 2 cut(s) 124, 153
TaaI ACNGT 2 cut(s) 20, 134
TaiI ACGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 15, 308
TasI AATT 1 cut(s) 312
TauI GCSGC 2 cut(s) 249, 276
TseI GCWGC 1 cut(s) 73
XapI RAATTY 1 cut(s) 312
XspI CTAG 3 cut(s) 213, 300, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.