Rh6BG279100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001047
Physical Location & Seq
Reverse (-)
50094298 .. 50095435
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG279100.1

Sequence Viewer

Length: 324 bp
ATGGATCTGAAGTTGGTTCGAGGTGATCAGGAATGGGCGCGGAATTGGGTGTCCTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTCCAGGGCAACGGAGCTCCTACTTGGGCTCTATGGGCGGGTGATCGTTCTGGGGATGGGGATGCTCAACGTGGTGGCTTTTTTTGCTATGCTGGTGATGGCCTGATGGTGGTCAGTAGGGGAGGCGGCGACGGCGACAGCGACATGCAACTTGGGAGCGGCCATGTTGTGGAGCAGCTGACTCTTAAACACCTTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.17

Weight (kDa)

4.54

Isoelectric Point (pI)

16.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 1 cut(s) 40
AciI CCGC 7 cut(s) 40, 86, 105, 120, 161, 249, 282
AclWI GGATC 2 cut(s) 12, 53
AcoI YGGCCR 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 3 cut(s) 68, 232, 292
AjnI CCWGG 2 cut(s) 61, 126
AluBI AGCT 2 cut(s) 140, 301
AluI AGCT 2 cut(s) 140, 301
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 2 cut(s) 12, 53
AoxI GGCC 2 cut(s) 223, 283
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 5 cut(s) 35, 100, 110, 176, 230
BanII GRGCYC 2 cut(s) 142, 154
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 310
BccI CCATC 5 cut(s) 62, 110, 173, 215, 223
BceAI ACGGC 2 cut(s) 118, 271
BciT130I CCWGG 2 cut(s) 63, 128
BclI TGATCA 1 cut(s) 25
BisI GCNGC 4 cut(s) 106, 250, 283, 299
BlsI GCNGC 4 cut(s) 107, 251, 284, 300
Bme1390I CCNGG 2 cut(s) 63, 128
BmrFI CCNGG 2 cut(s) 63, 128
BmsI GCATC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 94, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 232, 292
BseBI CCWGG 2 cut(s) 63, 128
BseDI CCNNGG 2 cut(s) 94, 127
BseGI GGATG 3 cut(s) 121, 184, 190
BseLI CCNNNNNNNGG 3 cut(s) 68, 232, 292
BseXI GCAGC 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 225, 285
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 3 cut(s) 68, 232, 292
BsnI GGCC 2 cut(s) 225, 285
Bsp1286I GDGCHC 2 cut(s) 142, 154
Bsp143I GATC 4 cut(s) 4, 25, 58, 166
BspACI CCGC 7 cut(s) 40, 86, 105, 120, 161, 249, 282
BspANI GGCC 2 cut(s) 225, 285
BspFNI CGCG 1 cut(s) 40
BspPI GGATC 2 cut(s) 12, 53
BsrBI CCGCTC 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 94, 127
BssMI GATC 4 cut(s) 4, 25, 58, 166
Bst2UI CCWGG 2 cut(s) 63, 128
Bst4CI ACNGT 2 cut(s) 76, 98
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 121, 184, 190
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 4 cut(s) 7, 28, 61, 169
BstMBI GATC 4 cut(s) 4, 25, 58, 166
BstMWI GCNNNNNNNGC 3 cut(s) 158, 207, 255
BstNI CCWGG 2 cut(s) 63, 128
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 61, 126
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 225, 285
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 121, 184, 190
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 72
CviAII CATG 2 cut(s) 268, 287
CviJI RGCY 7 cut(s) 108, 140, 152, 201, 225, 285, 301
CviKI_1 RGCY 7 cut(s) 108, 140, 152, 201, 225, 285, 301
CviQI GTAC 1 cut(s) 72
DpnI GATC 4 cut(s) 6, 27, 60, 168
DpnII GATC 4 cut(s) 4, 25, 58, 166
EaeI YGGCCR 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 142, 154
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 61, 126
EcoT38I GRGCYC 2 cut(s) 142, 154
FaeI CATG 2 cut(s) 271, 290
FaiI YATR 5 cut(s) 111, 157, 213, 269, 288
FatI CATG 2 cut(s) 267, 286
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 106, 250, 283, 299
FokI GGATG 3 cut(s) 128, 191, 197
FriOI GRGCYC 2 cut(s) 142, 154
Fsp4HI GCNGC 4 cut(s) 106, 250, 283, 299
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 106, 250, 283, 299
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 2 cut(s) 225, 285
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 271, 290
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 304
HphI GGTGA 5 cut(s) 35, 100, 110, 176, 230
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 85, 257
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 76, 98
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 207, 255
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 2 cut(s) 271, 290
HspAI GCGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 4, 25, 58, 166
LmnI GCTCC 4 cut(s) 137, 145, 279, 295
LpnPI CCDG 8 cut(s) 14, 48, 75, 113, 140, 159, 201, 239
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 175
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 98
MalI GATC 4 cut(s) 6, 27, 60, 168
MbiI CCGCTC 1 cut(s) 282
MboI GATC 4 cut(s) 4, 25, 58, 166
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 142, 154
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 2 cut(s) 14, 239
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 63, 128
MvaI CCWGG 2 cut(s) 63, 128
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 3 cut(s) 158, 207, 255
NdeII GATC 4 cut(s) 4, 25, 58, 166
NlaIII CATG 2 cut(s) 271, 290
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PflMI CCANNNNNTGG 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 4 cut(s) 107, 251, 284, 300
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 61, 126
PspGI CCWGG 2 cut(s) 61, 126
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 106, 250, 283, 299
Sau3AI GATC 4 cut(s) 4, 25, 58, 166
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 63, 128
SduI GDGCHC 2 cut(s) 142, 154
SetI ASST 5 cut(s) 25, 142, 196, 303, 318
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 1 cut(s) 43
SsiI CCGC 7 cut(s) 40, 86, 105, 120, 161, 249, 282
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 61, 126
TaaI ACNGT 2 cut(s) 76, 98
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 19, 57
TasI AATT 1 cut(s) 43
TauI GCSGC 3 cut(s) 108, 252, 285
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 292
XceI RCATGY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.