AT2G28580

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000821
Physical Location & Seq
Forward (+)
12244806 .. 12248474
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28580.2

Sequence Viewer

Length: 1611 bp
ATGATCCAGTCCTCAGAATCTCTAGGAATGGTCATGAAGCGAGAGTATATAAAAGACGACGAGCACCACAAATCTCTCGGCACCGCCCTGGGTGAGATATTGAAACACAATGAGCCCTCCACATCTCTAAGCACAGTTCTGGGCGAGATGTTTAAAAACAACGAGGAGAAGGAACATATTTTTTCGGATCTAGAACGAGGAACAATGCTAACAAGACCAATGGGCGAAGGATATATTCAATATCTACGGCTTTCTAAAGAGACGACTCAACCGGCGGATTCTAAGATTCCCGGTCTTTGGTCTTCTTCCGTTAGACCAGAGTTTTGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCTCAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGCTGAAGCCCTCAAGCGCTACAAAACCGATTTAAGATATTTGAACTATCTGAACATGGAGCTTCACAAGAAGAAGTGCCTTGATAGTATTGCAGATATATATGGGGATCAACCTGTCAAAGAGTTCAGGAGAATCATCGAAATAAATGAGAAATTCATAAGAGATAGCTACGCCGAGTCAACAATATGGATCAATACTAAAGATTTCGTAGAAATGATCCTCCACGACTCGGTGTTCATACTATTGTTCTTCATTCAAACCGGAAGTACCCTAAACTTCAACAAGAAAGAAGATATTCTTTTCAACCAGAGTCGTCTCATAAACGCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTCCCTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTCCTCAAATGTCAATACTAAGGAAACGTTTCGTGATATTACCCTTCGAGCTTTTAGGTTTGAGGGAAAGATCAAAGAAGAAGTGAGATTCCAACATTTTACAGATTTGTTTCGGTGTGTCCGTGTCAGCACACTTTCTTTGACAGAAGAACAAATTAACATAGCAAAAAACGAGCCACCGAAGAGCAGAAAGATTATGTACAACGCAGACAAACTAGACAGTGCAGGAGTGAATTTTGTGAATGTGGATGAAGAAAATGATTTATCGTTGGTGATTACTTTCAAAGACGGAATCTTGAAAATGCCTTGTTTCACAGTGGAAGACAACACCGAGAGGGTCGTGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCTCGAACTACTTTTGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGATCAAGACGTTGACTTGCTCGCCAAGAAAGGAATTGTAAAGAACTGGTTAGGACATCAAGGATCAGTGACAGAAATGGTAAACAAGCTATGTTTAGGGCTCGTGGATTTCGGATCTCACTATAGCGATATAGTCGAAAACCTCAACAAACACTACGACAATCGTCTCAACAGATCTGTCGGCACTCTTCGGCGAGTTTATTTCAAAGATCTTTGGACCGGTACTGCCACCATTGCCGCAGTCGTTCTCCTTGTGTTGACTTTAATTCAGACTGTGGCTTCCATTCTCCAAGTGATGATGCAGAACGACAATAAGTCTCCGCCTCCTCCAGCTCCGTCCCGGGGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

536

Amino Acids

61.79

Weight (kDa)

6.27

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 125 - 520 5e-105 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 5 cut(s) 84, 275, 753, 1497, 1580
AclI AACGTT 1 cut(s) 854
AclWI GGATC 6 cut(s) 195, 537, 620, 634, 1330, 1381
AcsI RAATTY 3 cut(s) 575, 1060, 1174
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 4 cut(s) 342, 691, 1028, 1483
AfeI AGCGCT 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 297, 652, 1601
AgeI ACCGGT 2 cut(s) 348, 1478
AhdI GACNNNNNGTC 1 cut(s) 1573
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 6 cut(s) 425, 484, 591, 878, 1348, 1592
AluI AGCT 6 cut(s) 425, 484, 591, 878, 1348, 1592
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 4 cut(s) 254, 743, 1430, 1581
AlwI GGATC 6 cut(s) 195, 537, 620, 634, 1330, 1381
Ama87I CYCGRG 4 cut(s) 368, 779, 1187, 1599
Aor51HI AGCGCT 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 3 cut(s) 575, 1060, 1174
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AsiGI ACCGGT 2 cut(s) 348, 1478
Asp700I GAANNNNTTC 2 cut(s) 717, 855
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 401, 1476
AsuC2I CCSGG 3 cut(s) 291, 1600, 1601
AsuHPI GGTGA 3 cut(s) 104, 401, 1111
AvaI CYCGRG 4 cut(s) 368, 779, 1187, 1599
AvaII GGWCC 2 cut(s) 401, 1476
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 117, 1362
BauI CACGAG 1 cut(s) 1361
BbsI GAAGAC 2 cut(s) 294, 1155
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 3 cut(s) 291, 1600, 1601
BcoDI GTCTC 4 cut(s) 254, 743, 1430, 1581
BfaI CTAG 3 cut(s) 23, 191, 1043
BfmI CTRYAG 3 cut(s) 334, 1381, 1607
BfoI RGCGCY 1 cut(s) 442
BglII AGATCT 3 cut(s) 766, 1433, 1468
BisI GCNGC 2 cut(s) 392, 1497
BlsI GCNGC 2 cut(s) 393, 1498
Bme1390I CCNGG 4 cut(s) 89, 291, 1600, 1601
Bme18I GGWCC 2 cut(s) 401, 1476
BmeRI GACNNNNNGTC 1 cut(s) 1573
BmeT110I CYCGRG 4 cut(s) 368, 779, 1187, 1599
BmgT120I GGNCC 2 cut(s) 401, 1476
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 4 cut(s) 89, 291, 1600, 1601
BmsI GCATC 2 cut(s) 339, 1548
BoxI GACNNNNGTC 1 cut(s) 1422
BpiI GAAGAC 2 cut(s) 294, 1155
BpmI CTGGAG 1 cut(s) 1572
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 3 cut(s) 291, 1600, 1601
BsaJI CCNNGG 5 cut(s) 87, 88, 369, 1599, 1600
BsaWI WCCGGW 3 cut(s) 348, 683, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 1217, 1247
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 652, 1601
Bse118I RCCGGY 3 cut(s) 271, 348, 1478
Bse1I ACTGG 2 cut(s) 7, 1310
Bse3DI GCAATG 2 cut(s) 1199, 1491
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 5 cut(s) 87, 88, 369, 1599, 1600
BseGI GGATG 1 cut(s) 1081
BseLI CCNNNNNNNGG 3 cut(s) 297, 652, 1601
BseMI GCAATG 2 cut(s) 1199, 1491
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 7, 1310
BseRI GAGGAG 3 cut(s) 179, 372, 1575
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 1071
BshNI GGYRCC 1 cut(s) 80
BshTI ACCGGT 2 cut(s) 348, 1478
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 4 cut(s) 368, 779, 1187, 1599
BsiSI CCGG 6 cut(s) 272, 291, 349, 684, 1479, 1600
BslFI GGGAC 1 cut(s) 1582
BslI CCNNNNNNNGG 3 cut(s) 297, 652, 1601
BsmAI GTCTC 4 cut(s) 254, 743, 1430, 1581
BsmBI CGTCTC 3 cut(s) 254, 743, 1430
BsmFI GGGAC 1 cut(s) 1582
BsoBI CYCGRG 4 cut(s) 368, 779, 1187, 1599
Bsp1286I GDGCHC 3 cut(s) 66, 117, 1362
Bsp1407I TGTACA 1 cut(s) 1026
BspACI CCGC 5 cut(s) 84, 275, 753, 1497, 1580
BspCNI CTCAG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 6 cut(s) 195, 537, 620, 634, 1330, 1381
BspQI GCTCTTC 1 cut(s) 1004
BspT107I GGYRCC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 1199, 1491
BsrFI RCCGGY 3 cut(s) 271, 348, 1478
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 2 cut(s) 7, 1310
BssAI RCCGGY 3 cut(s) 271, 348, 1478
BssECI CCNNGG 5 cut(s) 87, 88, 369, 1599, 1600
BssSI CACGAG 1 cut(s) 1361
Bst2BI CACGAG 1 cut(s) 1361
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 4 cut(s) 136, 1049, 1144, 1534
Bst6I CTCTTC 3 cut(s) 411, 1004, 1452
BstAUI TGTACA 1 cut(s) 1026
BstC8I GCNNGC 1 cut(s) 1281
BstDEI CTNAG 4 cut(s) 13, 128, 282, 846
BstF5I GGATG 1 cut(s) 1081
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 1 cut(s) 441
BstMAI GTCTC 4 cut(s) 254, 743, 1430, 1581
BstMWI GCNNNNNNNGC 1 cut(s) 1493
BstNI CCWGG 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 1422
BstSCI CCNGG 4 cut(s) 87, 289, 1598, 1599
BstSFI CTRYAG 3 cut(s) 334, 1381, 1607
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 294, 1155
BstX2I RGATCY 5 cut(s) 187, 766, 1373, 1433, 1468
BstYI RGATCY 5 cut(s) 187, 766, 1373, 1433, 1468
BtsCI GGATG 1 cut(s) 1081
BtsIMutI CAGTG 3 cut(s) 1054, 1149, 1332
Cac8I GCNNGC 1 cut(s) 1281
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 441
Cfr10I RCCGGY 3 cut(s) 271, 348, 1478
Cfr13I GGNCC 2 cut(s) 401, 1476
Cfr9I CCCGGG 1 cut(s) 1599
Csp6I GTAC 4 cut(s) 341, 690, 1027, 1482
CspAI ACCGGT 2 cut(s) 348, 1478
CviAII CATG 2 cut(s) 34, 478
CviQI GTAC 4 cut(s) 341, 690, 1027, 1482
DdeI CTNAG 4 cut(s) 13, 128, 282, 846
DraI TTTAAA 1 cut(s) 154
DriI GACNNNNNGTC 1 cut(s) 1573
Eam1104I CTCTTC 3 cut(s) 411, 1004, 1452
Eam1105I GACNNNNNGTC 1 cut(s) 1573
EarI CTCTTC 3 cut(s) 411, 1004, 1452
EciI GGCGGA 2 cut(s) 290, 1569
Eco24I GRGCYC 2 cut(s) 117, 1362
Eco47I GGWCC 2 cut(s) 401, 1476
Eco47III AGCGCT 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 4 cut(s) 368, 779, 1187, 1599
EcoRII CCWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 117, 1362
Esp3I CGTCTC 3 cut(s) 254, 743, 1430
FaeI CATG 2 cut(s) 37, 481
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 1 cut(s) 1582
FatI CATG 2 cut(s) 33, 477
Fnu4HI GCNGC 2 cut(s) 392, 1497
FokI GGATG 1 cut(s) 1088
FriOI GRGCYC 2 cut(s) 117, 1362
Fsp4HI GCNGC 2 cut(s) 392, 1497
FspBI CTAG 3 cut(s) 23, 191, 1043
GlaI GCGC 1 cut(s) 440
GluI GCNGC 2 cut(s) 392, 1497
GsuI CTGGAG 1 cut(s) 1572
HaeII RGCGCY 1 cut(s) 442
HapII CCGG 6 cut(s) 272, 291, 349, 684, 1479, 1600
HhaI GCGC 1 cut(s) 441
Hin1II CATG 2 cut(s) 37, 481
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HincII GTYRAC 3 cut(s) 603, 1273, 1518
HindII GTYRAC 3 cut(s) 603, 1273, 1518
HpaII CCGG 6 cut(s) 272, 291, 349, 684, 1479, 1600
HphI GGTGA 3 cut(s) 104, 401, 1111
Hpy166II GTNNAC 5 cut(s) 364, 603, 1273, 1342, 1518
Hpy188I TCNGA 6 cut(s) 16, 187, 401, 474, 1373, 1530
Hpy188III TCNNGA 8 cut(s) 34, 191, 550, 781, 860, 1123, 1168, 1265
Hpy8I GTNNAC 5 cut(s) 364, 603, 1273, 1342, 1518
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 163, 221, 881, 1246
HpyCH4III ACNGT 4 cut(s) 136, 1049, 1144, 1534
HpyCH4IV ACGT 2 cut(s) 854, 1269
HpyCH4V TGCA 4 cut(s) 330, 515, 1052, 1561
HpyF10VI GCNNNNNNNGC 1 cut(s) 1493
HpyF3I CTNAG 4 cut(s) 13, 128, 282, 846
HpySE526I ACGT 2 cut(s) 854, 1269
Hsp92II CATG 2 cut(s) 37, 481
HspAI GCGC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 1004
LmnI GCTCC 2 cut(s) 481, 1597
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 2 cut(s) 339, 1548
MaeI CTAG 3 cut(s) 23, 191, 1043
MaeII ACGT 2 cut(s) 854, 1269
MaeIII GTNAC 3 cut(s) 351, 1223, 1327
MflI RGATCY 5 cut(s) 187, 766, 1373, 1433, 1468
MhlI GDGCHC 3 cut(s) 66, 117, 1362
MluCI AATT 6 cut(s) 575, 981, 1060, 1174, 1293, 1524
MlyI GAGTC 4 cut(s) 259, 608, 644, 742
MmeI TCCRAC 1 cut(s) 943
MroXI GAANNNNTTC 2 cut(s) 717, 855
MseI TTAA 5 cut(s) 153, 455, 984, 1178, 1523
MspI CCGG 6 cut(s) 272, 291, 349, 684, 1479, 1600
MspR9I CCNGG 4 cut(s) 89, 291, 1600, 1601
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 1493
NciI CCSGG 3 cut(s) 291, 1600, 1601
NlaIII CATG 2 cut(s) 37, 481
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 2 cut(s) 57, 622
NmuCI GTSAC 2 cut(s) 1223, 1327
PaeR7I CTCGAG 2 cut(s) 779, 1187
PagI TCATGA 1 cut(s) 33
PasI CCCWGGG 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 1004
PcsI WCGNNNNNNNCGW 1 cut(s) 946
PdmI GAANNNNTTC 2 cut(s) 717, 855
PfeI GAWTC 6 cut(s) 17, 278, 286, 555, 915, 1119
PinAI ACCGGT 2 cut(s) 348, 1478
PkrI GCNGC 2 cut(s) 393, 1498
PleI GAGTC 4 cut(s) 259, 607, 644, 741
PpsI GAGTC 4 cut(s) 259, 607, 644, 741
PshAI GACNNNNGTC 1 cut(s) 1422
Psp1406I AACGTT 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 401, 1476
PspXI VCTCGAGB 1 cut(s) 1187
PsuI RGATCY 5 cut(s) 187, 766, 1373, 1433, 1468
RsaI GTAC 4 cut(s) 342, 691, 1028, 1483
RsaNI GTAC 4 cut(s) 341, 690, 1027, 1482
SapI GCTCTTC 1 cut(s) 1004
SaqAI TTAA 5 cut(s) 153, 455, 984, 1178, 1523
SatI GCNGC 2 cut(s) 392, 1497
Sau96I GGNCC 2 cut(s) 401, 1476
SchI GAGTC 4 cut(s) 259, 608, 644, 742
ScrFI CCNGG 4 cut(s) 89, 291, 1600, 1601
SduI GDGCHC 3 cut(s) 66, 117, 1362
SfaNI GCATC 2 cut(s) 339, 1548
SfcI CTRYAG 3 cut(s) 334, 1381, 1607
Sfr274I CTCGAG 2 cut(s) 779, 1187
SinI GGWCC 2 cut(s) 401, 1476
SlaI CTCGAG 2 cut(s) 779, 1187
SmaI CCCGGG 1 cut(s) 1601
SmlI CTYRAG 3 cut(s) 434, 779, 1187
SmoI CTYRAG 3 cut(s) 434, 779, 1187
Sse9I AATT 6 cut(s) 575, 981, 1060, 1174, 1293, 1524
SsiI CCGC 5 cut(s) 84, 275, 753, 1497, 1580
SspMI CTAG 3 cut(s) 23, 191, 1043
StyD4I CCNGG 4 cut(s) 87, 289, 1598, 1599
TaaI ACNGT 4 cut(s) 136, 1049, 1144, 1534
TaiI ACGT 2 cut(s) 857, 1272
TaqI TCGA 6 cut(s) 561, 780, 874, 1188, 1207, 1395
TasI AATT 6 cut(s) 575, 981, 1060, 1174, 1293, 1524
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 1 cut(s) 1499
TfiI GAWTC 6 cut(s) 17, 278, 286, 555, 915, 1119
Tru1I TTAA 5 cut(s) 153, 455, 984, 1178, 1523
Tru9I TTAA 5 cut(s) 153, 455, 984, 1178, 1523
TscAI CASTG 3 cut(s) 1054, 1149, 1332
TseFI GTSAC 2 cut(s) 1223, 1327
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 2 cut(s) 1223, 1327
TspDTI ATGAA 5 cut(s) 50, 568, 649, 664, 1092
TspGWI ACGGA 4 cut(s) 298, 938, 1131, 1584
TspMI CCCGGG 1 cut(s) 1599
TspRI CASTG 3 cut(s) 1054, 1149, 1332
VpaK11BI GGWCC 2 cut(s) 401, 1476
XapI RAATTY 3 cut(s) 575, 1060, 1174
XbaI TCTAGA 1 cut(s) 190
XhoI CTCGAG 2 cut(s) 779, 1187
XmaI CCCGGG 1 cut(s) 1599
XmnI GAANNNNTTC 2 cut(s) 717, 855
XspI CTAG 3 cut(s) 23, 191, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.