Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002640.1

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

71988 .. 73385

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002640.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atggaggatcaagaatacaatgacgcggtaccagtgttctaccaacctgagcagtggtgcatctacagggtcccaaacaaactccgcaatgtaaattcagcatcatatactcctcagttgctttccataggcccttttcatcatgggacactagagctgaaggacatggagaacaacaaaagaatatattgtgagaatttctgtgcaggttctttgaagagtatagatgaactaaaactcttcatcaaaagtcgtcttcaagacattgttggttgttatgcggggaccatcaatcagcaagacagcgaacttgtggatctgattctagtggatgcatgcttcatcattgaactttttttggtgaactctgaagaaacaactgaaaattattatcacttattcagatcaccatggctgaggaaagctctagagcaggatctgatactgtttgaaaatcagcttccttattctcttcttcaagacctatacgattttgccatgcctgcctcttgctttaatcccccaaatgaagtcaaactaccaaaacagccccatatcggtcatgaacagcgatactgtttgtcttgcctccatcactgcttgcgttgcttccgtaggacccctcttcgtgattattctataggggttgccaacgcagaacctgctcatccctttcttaagcttacctgtgaattcttcaaagagtacagcaagggaagatttgttaggaatggagtatcaccgaaacattttactgatttggtaagacactttctttgtccagaagaagaaatgacctgggtagatattcgtcttatccctgtcaaaactatatatgatgcaagaaagctaaaggaggcaggggtaaacttcaggccacttaaagaagcaggctttgtcataaaaggagatgagtcccacaaattttgtaatttcaatgtagcttgttttacaagtatggacatgaagctcacccaatttcgggtgaaggatcaaactgaatgcgttatcagaaacgtcatggccttggagcagtttttgtatccagagtcggcttatatttgcaaatattttttgctgatggataaacttgtggacaatgtggaggatgtgaacttgctgattgagagtggagtgattgttaacaagctagcaggctgcaatgaattggtagtgaacctgattaatacactttgtctggagattatggatgatatttgctgctatggtggtgtctgtaaccagctcaataagcactacgggatcagtttttggaaacgtcatgtggctatcctgaaacgagtttacttcaaggatctttggactgctagttcgactatacttgggttttttgtcctgattttctcaatcattggaaccattaagtcgctcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

465

Amino Acids

53.95

Weight (kDa)

6.25

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	197, 670
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	26, 85, 281
AclWI	GGATC	6 cut(s)	15, 324, 444, 999, 1271, 1323
AcsI	RAATTY	4 cut(s)	94, 196, 692, 923
AcuI	CTGAAG	3 cut(s)	179, 390, 856
AfaI	GTAC	2 cut(s)	30, 707
AfiI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	8 cut(s)	217, 260, 350, 452, 479, 700, 937, 1312
AjnI	CCWGG	1 cut(s)	797
AloI	GAACNNNNNNTCC	2 cut(s)	1315, 1347
AluBI	AGCT	9 cut(s)	157, 425, 460, 682, 850, 944, 970, 1150, 1246
AluI	AGCT	9 cut(s)	157, 425, 460, 682, 850, 944, 970, 1150, 1246
AlwI	GGATC	6 cut(s)	15, 324, 444, 999, 1271, 1323
AlwNI	CAGNNNCTG	2 cut(s)	439, 662
AoxI	GGCC	3 cut(s)	130, 875, 1023
ApeKI	GCWGC	2 cut(s)	1158, 1221
ApoI	RAATTY	4 cut(s)	94, 196, 692, 923
ArsI	GACNNNNNNTTYG	4 cut(s)	759, 791, 1315, 1347
AseI	ATTAAT	1 cut(s)	1185
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	70, 131, 285, 618
AsuHPI	GGTGA	5 cut(s)	373, 399, 732, 964, 997
AsuNHI	GCTAGC	1 cut(s)	1150
AvaII	GGWCC	3 cut(s)	70, 285, 618
BaeI	ACNNNNGTAYC	2 cut(s)	20, 53
BanI	GGYRCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	1145, 1208
BccI	CCATC	3 cut(s)	296, 600, 1075
BciT130I	CCWGG	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	1053
BfaI	CTAG	5 cut(s)	152, 326, 428, 1151, 1329
BfmI	CTRYAG	2 cut(s)	64, 639
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	2 cut(s)	197, 670
BfuI	GTATCC	1 cut(s)	1053
BisI	GCNGC	2 cut(s)	1159, 1222
BlsI	GCNGC	2 cut(s)	1160, 1223
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	3 cut(s)	70, 285, 618
BmgT120I	GGNCC	4 cut(s)	70, 131, 285, 618
BmiI	GGNNCC	6 cut(s)	30, 71, 72, 286, 620, 1378
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	4 cut(s)	69, 110, 322, 829
BmtI	GCTAGC	1 cut(s)	1154
BpiI	GAAGAC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	1220
Bpu10I	CCTNAGC	2 cut(s)	48, 416
BsaJI	CCNNGG	3 cut(s)	410, 798, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	1125, 1155
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 981, 982
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	2 cut(s)	94, 1168
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	410, 798, 1026
BseGI	GGATG	4 cut(s)	337, 667, 1114, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
BseMI	GCAATG	2 cut(s)	94, 1168
BseMII	CTCAG	3 cut(s)	39, 128, 407
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	1145, 1208
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	132, 877, 1025
BshNI	GGYRCC	1 cut(s)	28
BslFI	GGGAC	4 cut(s)	56, 160, 298, 901
BslI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
BsmFI	GGGAC	4 cut(s)	56, 160, 298, 901
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	3 cut(s)	132, 877, 1025
Bsp143I	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	3 cut(s)	26, 85, 281
BspANI	GGCC	3 cut(s)	132, 877, 1025
BspCNI	CTCAG	3 cut(s)	40, 127, 408
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	6 cut(s)	30, 71, 72, 286, 620, 1378
BspMI	ACCTGC	2 cut(s)	197, 670
BspOI	GCTAGC	1 cut(s)	1154
BspPI	GGATC	6 cut(s)	15, 324, 444, 999, 1271, 1323
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	94, 1168
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	410, 798, 1026
BssMI	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
BssT1I	CCWWGG	2 cut(s)	410, 1026
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	2 cut(s)	447, 578
Bst6I	CTCTTC	4 cut(s)	212, 245, 477, 630
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	6 cut(s)	337, 504, 602, 892, 1152, 1156
BstDEI	CTNAG	3 cut(s)	48, 114, 416
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	4 cut(s)	337, 667, 1114, 1216
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	7 cut(s)	10, 319, 407, 439, 994, 1266, 1318
BstMBI	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
BstMWI	GCNNNNNNNGC	4 cut(s)	503, 606, 662, 1252
BstNI	CCWGG	1 cut(s)	799
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	2 cut(s)	64, 639
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	1145, 1208
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	3 cut(s)	316, 436, 1315
BstYI	RGATCY	3 cut(s)	316, 436, 1315
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	3 cut(s)	132, 877, 1025
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	4 cut(s)	337, 667, 1114, 1216
BtsI	GCAGTG	2 cut(s)	59, 595
BtsIMutI	CAGTG	3 cut(s)	39, 59, 595
BveI	ACCTGC	2 cut(s)	197, 670
Cac8I	GCNNGC	6 cut(s)	337, 504, 602, 892, 1152, 1156
CaiI	CAGNNNCTG	2 cut(s)	439, 662
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	4 cut(s)	70, 131, 285, 618
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	29, 706
CspCI	CAANNNNNGTGG	2 cut(s)	908, 943
CviAII	CATG	9 cut(s)	143, 166, 336, 411, 499, 563, 964, 1021, 1283
CviQI	GTAC	2 cut(s)	29, 706
DdeI	CTNAG	3 cut(s)	48, 114, 416
DpnI	GATC	7 cut(s)	9, 318, 406, 438, 993, 1265, 1317
DpnII	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
Eam1104I	CTCTTC	4 cut(s)	212, 245, 477, 630
EarI	CTCTTC	4 cut(s)	212, 245, 477, 630
Eco130I	CCWWGG	2 cut(s)	410, 1026
Eco47I	GGWCC	3 cut(s)	70, 285, 618
Eco57I	CTGAAG	3 cut(s)	179, 390, 856
EcoO109I	RGGNCCY	3 cut(s)	70, 131, 618
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	410, 1026
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	410, 1026
FaeI	CATG	9 cut(s)	146, 169, 339, 414, 502, 566, 967, 1024, 1286
FaqI	GGGAC	4 cut(s)	56, 160, 298, 901
FatI	CATG	9 cut(s)	142, 165, 335, 410, 498, 562, 963, 1020, 1282
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	1159, 1222
FokI	GGATG	4 cut(s)	344, 654, 1121, 1223
Fsp4HI	GCNGC	2 cut(s)	1159, 1222
FspBI	CTAG	5 cut(s)	152, 326, 428, 1151, 1329
GluI	GCNGC	2 cut(s)	1159, 1222
GsuI	CTGGAG	1 cut(s)	1220
HaeIII	GGCC	3 cut(s)	132, 877, 1025
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	9 cut(s)	146, 169, 339, 414, 502, 566, 967, 1024, 1286
HincII	GTYRAC	1 cut(s)	1144
HindII	GTYRAC	1 cut(s)	1144
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	3 cut(s)	322, 914, 1049
HpaI	GTTAAC	1 cut(s)	1144
HphI	GGTGA	5 cut(s)	373, 399, 732, 964, 997
Hpy166II	GTNNAC	7 cut(s)	364, 868, 1096, 1114, 1144, 1177, 1306
Hpy188I	TCNGA	5 cut(s)	321, 370, 404, 441, 1013
Hpy8I	GTNNAC	7 cut(s)	364, 868, 1096, 1114, 1144, 1177, 1306
HpyAV	CCTTC	2 cut(s)	154, 982
HpyCH4III	ACNGT	2 cut(s)	447, 578
HpyCH4IV	ACGT	2 cut(s)	1017, 1279
HpyCH4V	TGCA	6 cut(s)	60, 206, 335, 842, 1065, 1161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	503, 606, 662, 1252
HpyF3I	CTNAG	3 cut(s)	48, 114, 416
HpySE526I	ACGT	2 cut(s)	1017, 1279
Hsp92II	CATG	9 cut(s)	146, 169, 339, 414, 502, 566, 967, 1024, 1286
KflI	GGGWCCC	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	32
KspAI	GTTAAC	1 cut(s)	1144
Kzo9I	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
LmnI	GCTCC	1 cut(s)	1030
Lsp1109I	GCAGC	2 cut(s)	1145, 1208
LweI	GCATC	4 cut(s)	69, 110, 322, 829
MaeI	CTAG	5 cut(s)	152, 326, 428, 1151, 1329
MaeII	ACGT	2 cut(s)	1017, 1279
MaeIII	GTNAC	1 cut(s)	1238
MalI	GATC	7 cut(s)	9, 318, 406, 438, 993, 1265, 1317
MboI	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
MflI	RGATCY	3 cut(s)	316, 436, 1315
MluCI	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1166
MlyI	GAGTC	2 cut(s)	923, 1058
MnlI	CCTC	7 cut(s)	123, 411, 517, 599, 633, 850, 1099
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	6 cut(s)	516, 678, 882, 1143, 1185, 1383
MspCI	CTTAAG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	799
Mva1269I	GAATGC	1 cut(s)	1007
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	503, 606, 662, 1252
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
NheI	GCTAGC	1 cut(s)	1150
NlaIII	CATG	9 cut(s)	146, 169, 339, 414, 502, 566, 967, 1024, 1286
NlaIV	GGNNCC	6 cut(s)	30, 71, 72, 286, 620, 1378
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	339
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	1007
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	1160, 1223
PleI	GAGTC	2 cut(s)	922, 1057
PpsI	GAGTC	2 cut(s)	922, 1057
PpuMI	RGGWCCY	2 cut(s)	70, 618
PshBI	ATTAAT	1 cut(s)	1185
Psp5II	RGGWCCY	2 cut(s)	70, 618
Psp6I	CCWGG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	6 cut(s)	30, 71, 72, 286, 620, 1378
PspPI	GGNCC	4 cut(s)	70, 131, 285, 618
PspPPI	RGGWCCY	2 cut(s)	70, 618
PstNI	CAGNNNCTG	2 cut(s)	439, 662
PsuI	RGATCY	3 cut(s)	316, 436, 1315
RsaI	GTAC	2 cut(s)	30, 707
RsaNI	GTAC	2 cut(s)	29, 706
SaqAI	TTAA	6 cut(s)	516, 678, 882, 1143, 1185, 1383
SatI	GCNGC	2 cut(s)	1159, 1222
Sau3AI	GATC	7 cut(s)	7, 316, 404, 436, 991, 1263, 1315
Sau96I	GGNCC	4 cut(s)	70, 131, 285, 618
SchI	GAGTC	2 cut(s)	923, 1058
ScrFI	CCNGG	1 cut(s)	799
SfaNI	GCATC	4 cut(s)	69, 110, 322, 829
SfcI	CTRYAG	2 cut(s)	64, 639
SinI	GGWCC	3 cut(s)	70, 285, 618
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1166
SsiI	CCGC	3 cut(s)	26, 85, 281
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	5 cut(s)	152, 326, 428, 1151, 1329
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	2 cut(s)	410, 1026
TaaI	ACNGT	2 cut(s)	447, 578
TaiI	ACGT	2 cut(s)	1020, 1282
TaqI	TCGA	1 cut(s)	1334
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1166
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	6 cut(s)	516, 678, 882, 1143, 1185, 1383
Tru9I	TTAA	6 cut(s)	516, 678, 882, 1143, 1185, 1383
TscAI	CASTG	3 cut(s)	39, 59, 602
TseI	GCWGC	2 cut(s)	1158, 1221
TspDTI	ATGAA	8 cut(s)	128, 232, 243, 331, 543, 579, 980, 1179
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	3 cut(s)	39, 59, 602
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	70, 285, 618
VspI	ATTAAT	1 cut(s)	1185
XapI	RAATTY	4 cut(s)	94, 196, 692, 923
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	339
XspI	CTAG	5 cut(s)	152, 326, 428, 1151, 1329
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.