Prupe.2G125200_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000821
Physical Location & Seq
Forward (+)
18188097 .. 18192310
4214 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G125200.3

Sequence Viewer

Length: 1752 bp
ATGACCATATATAGTATAAGCATAATGATTTTGGCACGCCTAACTTCTCAAACTTTTCCAGCAAAAAGAAAGAAAAAAAAATTCTCAAACTTTTTTACCCTAACAGAAGAGTGCGCGACGTTATTTAAGGGTGATTTTGGAGTGCCAAAGCATCGCTCTAATTCTGTAGTCATTCTGGAAACCGGAAGAGTCCATAAGGATAGGAGCCTGACTTATGCTAATAGAACATTTGTTACAGCTAAATGTTATTCTAGTGCTGCCACTGAAATTAGGTTCAACAGTATCAATTCCTTTCATACTGATTGTAGTTCCATTTTCAAAAGGAGAAAGACTAAGTCAGAAATCACTGAGAAAACAGAGAATGAAGATGAACGCCCGGTACGAGTCTTGGACAAGCCAGACAAGTGGTGTATCTATAGGGTTCCCAGCAAACTCCGCAAAGTAAATGAAGCAGCATACACTCCTCAATTACTGTCAATAGGCCCTTTCCACCATGGCAAACCAGAACTCAAGGACATGGAGACCCATAAAAAGATATATTATGAGAATTTTCTTGCACGTTTTAACAAGAATGACGATGAACTAAAGCAATTCATCAAGACTCGCCAAGAAAATATTCTTCGTTGTTACGCAGGGACCATTGAGCTTAACAAAGACTTTGAAGACATAATTGTGGTTGATGCGTGCTTCATCATTGAGCTATTTTTAATGAACTTTTGCGAACCAGAAAATCATGAAAATGATTATATATTGAGATCACCATGGCTGAGGAAAGCTGTAGAGCAGGACTTGATACTGTTTGAAAATCAGCTCCCATATTCTCTTCTTCAAGAACTATATCAGGACTTTGCTGTGCCTGCCTCTTCCAATTTCCAACCATGTAAAGAAGTACAAGAACAGGCTAACAGACATAGCAATACCAATCATTACCTGCAATACTGCTCGCCTTGCTGCCGGCATTGCTTTCCTTGCTGCTGGTGGATTCCTTCCAAGGATCAGTCCATTGTCCAAGTCGAACCTGCTAATGATGATCCCCTGCTTAAGCTTACCTGTGAGTTCTTCAAATATTATAGTAAGGGAAAATCCGTCAAGAATGGAGTAAGACCGAAACATTTCACCGATTTGGTTAGGTATTTTCTACGTCCTGACAAAGAAATGGATTTTGAACATAGTAGTACTCCTATAAAAAATATATATGCTGCAAGGAAGCTTAGGGCATCAGGGGTGAAATTTAGGCCACTTAAAGAAGGCCACTTTATCATAGAAAAAGATGAGGCCACTAAATGTAAGTTCAACTTGGCATGTTTTAGAAATATGGACTTGAAGCTTACGCAATTTTGTGTCAAGGATGAGACAGAATGCGTTGTTCGGAACATCATGGCCTTGGAGCAGTTTTTGTACCCAGACAAGCCTTATATCTGCAATTACTTTTTGCTTATGGATCAGCTGGTGGACACTGTGGATGATGTGGATTTCCTGGTTGAGAACAGAGTTATTCTTAACATGCTAGGCAGCAACGAAGCAGTGGCGAAGCTGGTTAATAGACTTTGCCAGCAGATCATGGATGATAAATCCTGCTATTTTGATATCTGTGAACAGCTTAATAAGCACCATGAGAATTTTTGGAACCGTCATGTGGCAACCCTGAAACGAGTTTACTTCAAGGATCTGTGGACTGGAAGTTCAACTGTACTTGGAGTTGTTGTCCTTGTTTTCTCAGTCATTGGAACCATTAAGTCCCTCACATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

584

Amino Acids

68.24

Weight (kDa)

8.52

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 939, 1027
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 436
AclWI GGATC 4 cut(s) 1002, 1025, 1449, 1674
AcsI RAATTY 4 cut(s) 80, 547, 1229, 1618
AfaI GTAC 5 cut(s) 381, 891, 1177, 1400, 1692
AfiI CCNNNNNNNGG 1 cut(s) 1636
AflII CTTAAG 1 cut(s) 1040
AjnI CCWGG 1 cut(s) 1476
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AloI GAACNNNNNNTCC 2 cut(s) 1666, 1698
Alw26I GTCTC 2 cut(s) 515, 1346
AlwI GGATC 4 cut(s) 1002, 1025, 1449, 1674
AoxI GGCC 5 cut(s) 481, 1235, 1249, 1275, 1380
ApeKI GCWGC 6 cut(s) 257, 452, 951, 972, 1199, 1512
ApoI RAATTY 4 cut(s) 80, 547, 1229, 1618
Asp700I GAANNNNTTC 2 cut(s) 615, 1112
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 482, 636
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 4 cut(s) 143, 750, 1108, 1237
AvaII GGWCC 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 669
BbvCI CCTCAGC 1 cut(s) 767
BbvI GCAGC 6 cut(s) 244, 464, 938, 959, 1186, 1524
BciT130I CCWGG 1 cut(s) 1478
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 515, 1346
BfaI CTAG 2 cut(s) 252, 1508
BfmI CTRYAG 3 cut(s) 165, 415, 777
BfrI CTTAAG 1 cut(s) 1040
BfuAI ACCTGC 2 cut(s) 939, 1027
BisI GCNGC 6 cut(s) 258, 453, 952, 973, 1200, 1513
BlsI GCNGC 6 cut(s) 259, 454, 953, 974, 1201, 1514
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 2 cut(s) 377, 1478
Bme18I GGWCC 1 cut(s) 636
BmgT120I GGNCC 2 cut(s) 482, 636
BmiI GGNNCC 5 cut(s) 206, 423, 637, 1628, 1729
BmrFI CCNGG 2 cut(s) 377, 1478
BmsI GCATC 3 cut(s) 160, 670, 1226
BpiI GAAGAC 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 767, 1211
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 493, 761, 990, 1383
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 1689, 1719
Bsc4I CCNNNNNNNGG 1 cut(s) 1636
Bse118I RCCGGY 1 cut(s) 954
Bse1I ACTGG 1 cut(s) 1681
Bse3DI GCAATG 1 cut(s) 958
BseBI CCWGG 1 cut(s) 1478
BseDI CCNNGG 4 cut(s) 493, 761, 990, 1383
BseGI GGATG 3 cut(s) 1354, 1468, 1570
BseLI CCNNNNNNNGG 1 cut(s) 1636
BseMI GCAATG 1 cut(s) 958
BseMII CTCAG 3 cut(s) 339, 758, 1731
BseNI ACTGG 1 cut(s) 1681
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 6 cut(s) 244, 464, 938, 959, 1186, 1524
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 5 cut(s) 483, 1237, 1251, 1277, 1382
BsiSI CCGG 3 cut(s) 183, 377, 955
BslFI GGGAC 2 cut(s) 649, 1723
BslI CCNNNNNNNGG 1 cut(s) 1636
BsmAI GTCTC 2 cut(s) 515, 1346
BsmFI GGGAC 2 cut(s) 649, 1723
BsmI GAATGC 1 cut(s) 1364
BsnI GGCC 5 cut(s) 483, 1237, 1251, 1277, 1382
Bso31I GGTCTC 1 cut(s) 515
Bsp143I GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
Bsp19I CCATGG 2 cut(s) 493, 761
BspACI CCGC 1 cut(s) 436
BspANI GGCC 5 cut(s) 483, 1237, 1251, 1277, 1382
BspCNI CTCAG 3 cut(s) 340, 759, 1730
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 5 cut(s) 206, 423, 637, 1628, 1729
BspMI ACCTGC 2 cut(s) 939, 1027
BspPI GGATC 4 cut(s) 1002, 1025, 1449, 1674
BspTI CTTAAG 1 cut(s) 1040
BspTNI GGTCTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 958
BsrFI RCCGGY 1 cut(s) 954
BsrI ACTGG 1 cut(s) 1681
BssAI RCCGGY 1 cut(s) 954
BssECI CCNNGG 4 cut(s) 493, 761, 990, 1383
BssMI GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
BssT1I CCWWGG 4 cut(s) 493, 761, 990, 1383
Bst2UI CCWGG 1 cut(s) 1478
Bst4CI ACNGT 6 cut(s) 281, 474, 798, 1459, 1631, 1690
Bst6I CTCTTC 4 cut(s) 102, 181, 828, 868
BstAFI CTTAAG 1 cut(s) 1040
BstC8I GCNNGC 6 cut(s) 37, 685, 858, 944, 956, 1553
BstDEI CTNAG 5 cut(s) 333, 348, 767, 1211, 1717
BstDSI CCRYGG 2 cut(s) 493, 761
BstF5I GGATG 3 cut(s) 1354, 1468, 1570
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 6 cut(s) 758, 997, 1033, 1444, 1560, 1669
BstMAI GTCTC 2 cut(s) 515, 1346
BstMBI GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
BstMWI GCNNNNNNNGC 6 cut(s) 435, 857, 948, 960, 969, 1606
BstNI CCWGG 1 cut(s) 1478
BstNSI RCATGY 2 cut(s) 1305, 1507
BstSCI CCNGG 2 cut(s) 375, 1476
BstSFI CTRYAG 3 cut(s) 165, 415, 777
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 6 cut(s) 244, 464, 938, 959, 1186, 1524
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 1666
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 1666
BsuRI GGCC 5 cut(s) 483, 1237, 1251, 1277, 1382
BtgI CCRYGG 2 cut(s) 493, 761
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 3 cut(s) 1354, 1468, 1570
BtsI GCAGTG 1 cut(s) 1530
BtsIMutI CAGTG 4 cut(s) 261, 345, 1455, 1530
BveI ACCTGC 2 cut(s) 939, 1027
Cac8I GCNNGC 6 cut(s) 37, 685, 858, 944, 956, 1553
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 954
Cfr13I GGNCC 2 cut(s) 482, 636
Csp6I GTAC 5 cut(s) 380, 890, 1176, 1399, 1691
CviQI GTAC 5 cut(s) 380, 890, 1176, 1399, 1691
DdeI CTNAG 5 cut(s) 333, 348, 767, 1211, 1717
DpnI GATC 6 cut(s) 757, 996, 1032, 1443, 1559, 1668
DpnII GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
Eam1104I CTCTTC 4 cut(s) 102, 181, 828, 868
EarI CTCTTC 4 cut(s) 102, 181, 828, 868
Eco130I CCWWGG 4 cut(s) 493, 761, 990, 1383
Eco31I GGTCTC 1 cut(s) 515
Eco32I GATATC 1 cut(s) 1588
Eco47I GGWCC 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 1476
EcoRV GATATC 1 cut(s) 1588
EcoT14I CCWWGG 4 cut(s) 493, 761, 990, 1383
ErhI CCWWGG 4 cut(s) 493, 761, 990, 1383
FalI AAGNNNNNCTT 2 cut(s) 1280, 1312
FaqI GGGAC 2 cut(s) 649, 1723
Fnu4HI GCNGC 6 cut(s) 258, 453, 952, 973, 1200, 1513
FokI GGATG 3 cut(s) 1361, 1475, 1577
Fsp4HI GCNGC 6 cut(s) 258, 453, 952, 973, 1200, 1513
FspBI CTAG 2 cut(s) 252, 1508
GlaI GCGC 1 cut(s) 115
GluI GCNGC 6 cut(s) 258, 453, 952, 973, 1200, 1513
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 5 cut(s) 483, 1237, 1251, 1277, 1382
HapII CCGG 3 cut(s) 183, 377, 955
HhaI GCGC 1 cut(s) 116
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 3 cut(s) 1043, 1208, 1325
HinfI GANTC 4 cut(s) 189, 384, 601, 982
HpaII CCGG 3 cut(s) 183, 377, 955
HphI GGTGA 4 cut(s) 143, 750, 1108, 1237
Hpy166II GTNNAC 4 cut(s) 1453, 1595, 1657, 1674
Hpy188I TCNGA 2 cut(s) 340, 1371
Hpy188III TCNNGA 7 cut(s) 176, 598, 734, 830, 842, 1090, 1145
Hpy8I GTNNAC 4 cut(s) 1453, 1595, 1657, 1674
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 996, 1241
HpyCH4III ACNGT 6 cut(s) 281, 474, 798, 1459, 1631, 1690
HpyCH4IV ACGT 3 cut(s) 119, 559, 1141
HpyCH4V TGCA 4 cut(s) 557, 934, 1202, 1422
HpyF10VI GCNNNNNNNGC 6 cut(s) 435, 857, 948, 960, 969, 1606
HpyF3I CTNAG 5 cut(s) 333, 348, 767, 1211, 1717
HpySE526I ACGT 3 cut(s) 119, 559, 1141
HspAI GCGC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 954
KroNI GCCGGC 1 cut(s) 956
Kzo9I GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
LmnI GCTCC 3 cut(s) 204, 816, 1387
Lsp1109I GCAGC 6 cut(s) 244, 464, 938, 959, 1186, 1524
LweI GCATC 3 cut(s) 160, 670, 1226
MaeI CTAG 2 cut(s) 252, 1508
MaeII ACGT 3 cut(s) 119, 559, 1141
MaeIII GTNAC 2 cut(s) 232, 626
MalI GATC 6 cut(s) 757, 996, 1032, 1443, 1559, 1668
MboI GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
MboII GAAGA 9 cut(s) 119, 198, 377, 611, 674, 815, 818, 855, 1051
MflI RGATCY 1 cut(s) 1666
MlyI GAGTC 3 cut(s) 198, 393, 595
MmeI TCCRAC 1 cut(s) 898
MnlI CCTC 5 cut(s) 474, 762, 871, 1267, 1751
MroNI GCCGGC 1 cut(s) 954
MroXI GAANNNNTTC 2 cut(s) 615, 1112
MslI CAYNNNNRTG 2 cut(s) 671, 738
MspA1I CMGCKG 1 cut(s) 1447
MspCI CTTAAG 1 cut(s) 1040
MspI CCGG 3 cut(s) 183, 377, 955
MspR9I CCNGG 2 cut(s) 377, 1478
Mva1269I GAATGC 1 cut(s) 1364
MvaI CCWGG 1 cut(s) 1478
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 6 cut(s) 435, 857, 948, 960, 969, 1606
NaeI GCCGGC 1 cut(s) 956
NciI CCSGG 1 cut(s) 377
NcoI CCATGG 2 cut(s) 493, 761
NdeII GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
NgoMIV GCCGGC 1 cut(s) 954
NlaIV GGNNCC 5 cut(s) 206, 423, 637, 1628, 1729
NspI RCATGY 2 cut(s) 1305, 1507
PagI TCATGA 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PctI GAATGC 1 cut(s) 1364
PdiI GCCGGC 1 cut(s) 956
PdmI GAANNNNTTC 2 cut(s) 615, 1112
PfeI GAWTC 1 cut(s) 982
PflFI GACNNNGTC 1 cut(s) 334
PkrI GCNGC 6 cut(s) 259, 454, 953, 974, 1201, 1514
PleI GAGTC 3 cut(s) 197, 392, 595
PpsI GAGTC 3 cut(s) 197, 392, 595
Psp6I CCWGG 1 cut(s) 1476
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 1476
PspN4I GGNNCC 5 cut(s) 206, 423, 637, 1628, 1729
PspPI GGNCC 2 cut(s) 482, 636
PsrI GAACNNNNNNTAC 4 cut(s) 217, 249, 363, 395
PsuI RGATCY 1 cut(s) 1666
PsyI GACNNNGTC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 1447
RsaI GTAC 5 cut(s) 381, 891, 1177, 1400, 1692
RsaNI GTAC 5 cut(s) 380, 890, 1176, 1399, 1691
RseI CAYNNNNRTG 2 cut(s) 671, 738
SatI GCNGC 6 cut(s) 258, 453, 952, 973, 1200, 1513
Sau3AI GATC 6 cut(s) 755, 994, 1030, 1441, 1557, 1666
Sau96I GGNCC 2 cut(s) 482, 636
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 3 cut(s) 198, 393, 595
ScrFI CCNGG 2 cut(s) 377, 1478
SfaNI GCATC 3 cut(s) 160, 670, 1226
SfcI CTRYAG 3 cut(s) 165, 415, 777
SinI GGWCC 1 cut(s) 636
SmiMI CAYNNNNRTG 2 cut(s) 671, 738
SmlI CTYRAG 2 cut(s) 509, 1040
SmoI CTYRAG 2 cut(s) 509, 1040
SsiI CCGC 1 cut(s) 436
SspI AATATT 2 cut(s) 616, 1067
SspMI CTAG 2 cut(s) 252, 1508
StyD4I CCNGG 2 cut(s) 375, 1476
StyI CCWWGG 4 cut(s) 493, 761, 990, 1383
TaaI ACNGT 6 cut(s) 281, 474, 798, 1459, 1631, 1690
TaiI ACGT 3 cut(s) 122, 562, 1144
TaqI TCGA 1 cut(s) 1014
TaqII GACCGA 1 cut(s) 1120
TatI WGTACW 3 cut(s) 889, 1175, 1690
TfiI GAWTC 1 cut(s) 982
TscAI CASTG 4 cut(s) 268, 352, 1462, 1530
TseI GCWGC 6 cut(s) 257, 452, 951, 972, 1199, 1512
TspDTI ATGAA 9 cut(s) 284, 378, 384, 462, 583, 594, 679, 725, 750
TspGWI ACGGA 1 cut(s) 1075
TspRI CASTG 4 cut(s) 268, 352, 1462, 1530
Tth111I GACNNNGTC 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 1040
VpaK11BI GGWCC 1 cut(s) 636
XapI RAATTY 4 cut(s) 80, 547, 1229, 1618
XceI RCATGY 2 cut(s) 1305, 1507
XmnI GAANNNNTTC 2 cut(s) 615, 1112
XspI CTAG 2 cut(s) 252, 1508
ZrmI AGTACT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.