Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001241.1

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

40054 .. 41049

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001241.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggtagaacctcagagtgaacaaagagagaatgcacccgtattgttcttgcaggaatggtgtatctataggtttcccagccagctccgcaatgtagatgaagcagcatacactcctcaaacactttcaatagggcctttccaccatggaaatccaaaactgagggacatggaggcccataagaacaaatattatgagttgttttgcagacgtacctttaaatgtgagatcgactttttgaacctcatcctagttgacgcctgcttcataattgaactctttttgactaattctgaacaagaacaacataatgcaaattattatatactgagatcaccgtggctgaggaaaacggtggagagggacctgatactgttggaaaatcagcttccttattttcttcttcaaaagctatatgactttgccatacctaccttttccaatggccatcttggcaatggagaccaagcacaagttgggggacatgcccataaagatagcaccaacagtcagcaatattgcttcccttgcttccagcccggtgattttcaagagaactccatccaatctgaacctattcaacgtggcttatttattgaacttacctgtaagttttttaaggcatacactgagggaaaatctgtcgggaatggatttgagccaaaacacttcactgatatggttagacactttctatgcccgtgcaaggagctgttgtgggtcaaaaattatgatcagcccgtcaaaattaaataccatgcaaaaaagctgaaggttgcaggagtgaagtttatgccacttagagaaccatttgttataaaggaagaccctgtgttgacgtttaacccagcatgtttggcacataaggagttgaagcttacaagactttgggcagagtatgaggcagaatgcattttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

306

Amino Acids

35.89

Weight (kDa)

6.6

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	8 cut(s)	129, 241, 275, 407, 551, 581, 599, 874
AluBI	AGCT	6 cut(s)	85, 388, 412, 712, 769, 877
AluI	AGCT	6 cut(s)	85, 388, 412, 712, 769, 877
Alw26I	GTCTC	1 cut(s)	456
AoxI	GGCC	3 cut(s)	134, 174, 445
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	3 cut(s)	134, 175, 364
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	327, 554
AvaII	GGWCC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	831
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	2 cut(s)	456, 569
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	67
BglI	GCCNNNNNGGC	1 cut(s)	453
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	134, 175, 364
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	145, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse3DI	GCAATG	2 cut(s)	97, 463
BseDI	CCNNGG	2 cut(s)	145, 338
BseGI	GGATG	2 cut(s)	246, 561
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	2 cut(s)	97, 463
BseMII	CTCAG	5 cut(s)	26, 152, 320, 335, 621
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	2 cut(s)	77, 847
BshFI	GGCC	3 cut(s)	136, 176, 447
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	3 cut(s)	179, 377, 495
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	3 cut(s)	179, 377, 495
BsmI	GAATGC	2 cut(s)	37, 914
BsnI	GGCC	3 cut(s)	136, 176, 447
Bso31I	GGTCTC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	228, 332, 733
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	3 cut(s)	136, 176, 447
BspCNI	CTCAG	5 cut(s)	25, 153, 321, 336, 622
BspLI	GGNNCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	97, 463
BssECI	CCNNGG	2 cut(s)	145, 338
BssMI	GATC	3 cut(s)	228, 332, 733
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	145
Bst4CI	ACNGT	4 cut(s)	339, 355, 375, 509
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	83, 262
BstDEI	CTNAG	6 cut(s)	12, 161, 329, 344, 630, 800
BstDSI	CCRYGG	2 cut(s)	145, 338
BstF5I	GGATG	2 cut(s)	246, 561
BstKTI	GATC	3 cut(s)	231, 335, 736
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	228, 332, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 453, 528, 857
BstNSI	RCATGY	2 cut(s)	488, 855
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	831
BsuRI	GGCC	3 cut(s)	136, 176, 447
BtgI	CCRYGG	2 cut(s)	145, 338
BtsCI	GGATG	2 cut(s)	246, 561
BtsIMutI	CAGTG	2 cut(s)	627, 672
Cac8I	GCNNGC	2 cut(s)	83, 262
Cfr13I	GGNCC	3 cut(s)	134, 175, 364
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	5 cut(s)	146, 169, 485, 758, 852
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	6 cut(s)	12, 161, 329, 344, 630, 800
DpnI	GATC	3 cut(s)	230, 334, 735
DpnII	GATC	3 cut(s)	228, 332, 733
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	791
EcoO109I	RGGNCCY	2 cut(s)	134, 364
EcoT14I	CCWWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	914
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	5 cut(s)	149, 172, 488, 761, 855
FaqI	GGGAC	3 cut(s)	179, 377, 495
FatI	CATG	5 cut(s)	145, 168, 484, 757, 851
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	233, 548
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	2 cut(s)	81, 851
HaeIII	GGCC	3 cut(s)	136, 176, 447
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	149, 172, 488, 761, 855
HincII	GTYRAC	2 cut(s)	256, 837
HindII	GTYRAC	2 cut(s)	256, 837
HindIII	AAGCTT	1 cut(s)	875
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	327, 554
Hpy166II	GTNNAC	3 cut(s)	20, 256, 837
Hpy188I	TCNGA	3 cut(s)	15, 295, 571
Hpy188III	TCNNGA	2 cut(s)	551, 646
Hpy8I	GTNNAC	3 cut(s)	20, 256, 837
HpyAV	CCTTC	1 cut(s)	766
HpyCH4III	ACNGT	4 cut(s)	339, 355, 375, 509
HpyCH4IV	ACGT	3 cut(s)	211, 583, 839
HpyCH4V	TGCA	8 cut(s)	35, 52, 207, 314, 705, 761, 779, 912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 453, 528, 857
HpyF3I	CTNAG	6 cut(s)	12, 161, 329, 344, 630, 800
HpySE526I	ACGT	3 cut(s)	211, 583, 839
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	149, 172, 488, 761, 855
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	228, 332, 733
LmnI	GCTCC	2 cut(s)	90, 709
Lsp1109I	GCAGC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	3 cut(s)	211, 583, 839
MalI	GATC	3 cut(s)	230, 334, 735
MboI	GATC	3 cut(s)	228, 332, 733
MboII	GAAGA	3 cut(s)	392, 395, 836
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	5 cut(s)	270, 289, 316, 727, 747
MluNI	TGGCCA	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	21, 126, 156, 166, 254, 339, 354, 625, 895
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	914
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	4 cut(s)	219, 618, 750, 843
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	37, 914
MwoI	GCNNNNNNNGC	4 cut(s)	87, 453, 528, 857
NciI	CCSGG	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	228, 332, 733
NlaIII	CATG	5 cut(s)	149, 172, 488, 761, 855
NlaIV	GGNNCC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	914
NspI	RCATGY	2 cut(s)	488, 855
PctI	GAATGC	2 cut(s)	37, 914
PdmI	GAANNNNTTC	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	364
PspFI	CCCAGC	2 cut(s)	77, 847
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	134, 175, 364
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	219, 618, 750, 843
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	228, 332, 733
Sau96I	GGNCC	3 cut(s)	134, 175, 364
ScrFI	CCNGG	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	270, 289, 316, 727, 747
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	2 cut(s)	191, 518
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	4 cut(s)	339, 355, 375, 509
TaiI	ACGT	3 cut(s)	214, 586, 842
TaqI	TCGA	1 cut(s)	231
TasI	AATT	5 cut(s)	270, 289, 316, 727, 747
Tru1I	TTAA	4 cut(s)	219, 618, 750, 843
Tru9I	TTAA	4 cut(s)	219, 618, 750, 843
TscAI	CASTG	2 cut(s)	634, 679
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	114, 256
TspRI	CASTG	2 cut(s)	634, 679
VpaK11BI	GGWCC	1 cut(s)	364
XceI	RCATGY	2 cut(s)	488, 855
XcmI	CCANNNNNNNNNTGG	2 cut(s)	455, 473
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.