Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

38944507 .. 38947704

Gene Structure 3198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGTGGAAAGAAAATACTACCAATAGTCAATACAATATGAGAAATCTGACGGCAGCAGGGGTTAACTTTATGCCATTTCCTAAAGATGGACGCTTTGTGGTAAAAGAAGGTGACATGTTAAGGTTAGCAAGTTTTAAAAGGATGGATTTGAAACTTTCACAGTTTAGTGTAAAGAATGAGACGGAATGTATTATTCGCAATGTCATGGCAGTTGAGCAGTTTCTGTATCCAGACGATGCTTATGTTTGCAATTACTTCTTGCTGATGGATAAACTTGTGGACACTGTGGAAGATGTGGAGTTTCTGATTCATAAAAAAGTGATCGTTAACATGCTAGGCAGTAACGAAGCAGTGGTGGACCTGGTGAATCGCCTATGCGATCAGATTCTCCGAGAAAGATCGTGCTATGTTCATATCTGTAAAGATCTAAATGAGCACTATGAGAATCGTTGGAACCATCGCTTGGCAAACCTGAAACAAGTTTACTTCAAGGATATGTGGACAGGCAGTTCAACTATTTTCGGAATTGTTGTTATGGGATTCTCTATCATTGGATCCATTAATTCATTCAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

193

Amino Acids

22.58

Weight (kDa)

6.89

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	10 - 180	1.4e-41	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AclWI	GGATC	2 cut(s)	552, 565
AfiI	CCNNNNNNNGG	2 cut(s)	89, 466
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	154, 493, 516, 574
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	552, 565
AlwNI	CAGNNNCTG	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	125, 379
AvaII	GGWCC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	4 cut(s)	83, 139, 262, 468
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	458, 559
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 466
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	89, 466
BseMI	GCAATG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	89, 466
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	5 cut(s)	324, 382, 401, 427, 557
BspLI	GGNNCC	2 cut(s)	458, 559
BspPI	GGATC	2 cut(s)	552, 565
BsrDI	GCAATG	1 cut(s)	208
BssMI	GATC	5 cut(s)	324, 382, 401, 427, 557
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	165, 289
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	5 cut(s)	327, 385, 404, 430, 560
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	5 cut(s)	324, 382, 401, 427, 557
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	2 cut(s)	121, 337
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	427, 557
BstYI	RGATCY	2 cut(s)	427, 557
BsuI	GTATCC	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	285, 360
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	363
CviAII	CATG	3 cut(s)	118, 208, 334
DpnI	GATC	5 cut(s)	326, 384, 403, 429, 559
DpnII	GATC	5 cut(s)	324, 382, 401, 427, 557
DraI	TTTAAA	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	3 cut(s)	121, 211, 337
FatI	CATG	3 cut(s)	117, 207, 333
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	57
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	121, 211, 337
HincII	GTYRAC	2 cut(s)	67, 331
HindII	GTYRAC	2 cut(s)	67, 331
HinfI	GANTC	5 cut(s)	310, 370, 388, 448, 543
HpaI	GTTAAC	2 cut(s)	67, 331
HphI	GGTGA	2 cut(s)	125, 379
Hpy166II	GTNNAC	6 cut(s)	67, 283, 331, 361, 487, 504
Hpy188I	TCNGA	5 cut(s)	51, 309, 387, 395, 527
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	6 cut(s)	67, 283, 331, 361, 487, 504
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	165, 289
HpyCH4V	TGCA	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	121, 211, 337
KspAI	GTTAAC	2 cut(s)	67, 331
Kzo9I	GATC	5 cut(s)	324, 382, 401, 427, 557
LpnPI	CCDG	6 cut(s)	45, 246, 350, 377, 488, 492
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	229
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	113, 344
MalI	GATC	5 cut(s)	326, 384, 403, 429, 559
MboI	GATC	5 cut(s)	324, 382, 401, 427, 557
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	2 cut(s)	427, 557
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	3 cut(s)	253, 528, 565
MmeI	TCCRAC	1 cut(s)	434
MseI	TTAA	5 cut(s)	66, 122, 138, 330, 564
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
NdeII	GATC	5 cut(s)	324, 382, 401, 427, 557
NlaIII	CATG	3 cut(s)	121, 211, 337
NlaIV	GGNNCC	2 cut(s)	458, 559
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	2 cut(s)	121, 337
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	5 cut(s)	310, 370, 388, 448, 543
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	458, 559
PspPI	GGNCC	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	427, 557
SaqAI	TTAA	5 cut(s)	66, 122, 138, 330, 564
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	324, 382, 401, 427, 557
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	4 cut(s)	115, 128, 366, 477
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	361
Sse9I	AATT	3 cut(s)	253, 528, 565
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	165, 289
TasI	AATT	3 cut(s)	253, 528, 565
TfiI	GAWTC	5 cut(s)	310, 370, 388, 448, 543
Tru1I	TTAA	5 cut(s)	66, 122, 138, 330, 564
Tru9I	TTAA	5 cut(s)	66, 122, 138, 330, 564
TscAI	CASTG	2 cut(s)	292, 360
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	302, 404, 558
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	292, 360
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	564
XceI	RCATGY	2 cut(s)	121, 337
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.