Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

18110951 .. 18112709

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGACTGGAAGCCAAAAATATCGCTTGAGGTCGCTAAGAAGGACAAAGACTACGTCAGAGATCGCAAAGAAAACTGTGAATGAAGAAGAATGCCATGGCAAGGTACGAGTGTTGGACCAGCCAGACAAGTGGTGTATCTACAGGGTCCCCAGCAAACTCCGCAAAGTAAATGAAGCAGCATACACTCCTCAATTACTATCAATAGGCCCTTTCCACCATGGAAAACCAGAACTGAAGGACATGGAAACCCATAAAAAGATATATTATGAGAATTTTCTTGCACGTTGTAAGAAGAGTAAGGATGAACTAGAGCAATTTATCAAGACTCGTCAAGAAAATATTCTTTGTTGTTATGCAGGGACCATTGAGCTCGACGTAGACCCTGCAAACATAATTGTGGTTGATGCCTGCTTCATCATCGAGCTCTTTTTAACGAACTTCTATGAAACTGAAAATCATATAAATGATTATATATTGAGATCACCATGGCTGAGGAAAGCTGTAGAGCAGGACTTGATATTGTTTGAAAATCAACTTCCTTATTCTCTTCTTCAAGAACTATATCATGACTTTGCTACTCGTAGTACCAATGACCTCCCGTGCTGCTTGCCTTGCTCCTGGCGGATACCTTGCAATGAACATTCCATAGAGATTGACGAAGCCAAACCTGCGGATGACGAAGCCGAACCTGCTGATTATGATCCCCTGCTTGAGCTTACCTTTGAGTTCTTCAAAGATTATAATGAGGGGAAATCCTTCAAGAATAGAGTAAAACCGAAACATTTCACCGATTTGGTTAGGCATTTTCTATGTCCTGACAAAGAAATGGATTGTGAACATAATAGTGCTCCTGTCAAAAATATATATGCTGCAAAGAAGCTGAGGGCATCAGGGGTGAAGTTTAGGCCACTTAAAGATGGACCCTTAATCATAAAGAAAGATGAGGCCACTAAATGTAAGTTCAACTTGGCATGTTTTAGAAATATGGACTTGAAGCTTACGCCATTTTGTGTCAAGGATGAGACAGAATGCGTTGTTCGGAACATCATGGCCTTGGAGCAGTTTTTGTACCCAGACAAACCTTATATCTGCAATTACTTCTTGCTTATGGATCAGCTGGTGGACACTGTGGATGATGTGGTTTTGCTGGTTGAGAACAAAGTTATTCTTAACATGCTAGGCAGCAACGAAGCAGTAGCCAAGCTGGTTAATAGACTTTGCGAGCAGATCATGGACGATAAATCCTGCTATTTTGATATCTGTGAACAACTTAATAAGCACTATGAGAATTTTTGGAACCGTCATGTGGCAACCCTGAAACGAGTTTACTTCAAGGATCTCTGGACTGGCAGTTCAACTGTACTTGGAGTTGTTGTCCTTGTTTTCTCAGTCATTGGAACCATTAAGTCTCTCAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

474

Amino Acids

55.1

Weight (kDa)

6.35

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
Acc36I	ACCTGC	2 cut(s)	676, 697
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	3 cut(s)	160, 622, 671
AclWI	GGATC	3 cut(s)	695, 1119, 1344
AcsI	RAATTY	2 cut(s)	271, 1288
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	105, 586, 1070, 1362
AfiI	CCNNNNNNNGG	2 cut(s)	100, 1306
AgsI	TTSAA	8 cut(s)	527, 554, 733, 760, 964, 994, 1333, 1356
AjnI	CCWGG	1 cut(s)	617
AloI	GAACNNNNNNTCC	2 cut(s)	1336, 1368
AluBI	AGCT	8 cut(s)	370, 424, 500, 715, 880, 997, 1117, 1204
AluI	AGCT	8 cut(s)	370, 424, 500, 715, 880, 997, 1117, 1204
Alw21I	GWGCWC	3 cut(s)	372, 426, 850
Alw26I	GTCTC	2 cut(s)	1016, 1413
AlwI	GGATC	3 cut(s)	695, 1119, 1344
AoxI	GGCC	4 cut(s)	205, 905, 945, 1050
ApeKI	GCWGC	4 cut(s)	176, 603, 869, 1182
ApoI	RAATTY	2 cut(s)	271, 1288
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	3 cut(s)	339, 755, 782
AspS9I	GGNCC	5 cut(s)	115, 145, 206, 360, 920
AsuHPI	GGTGA	3 cut(s)	474, 778, 907
AvaII	GGWCC	4 cut(s)	115, 145, 360, 920
BaeI	ACNNNNGTAYC	2 cut(s)	95, 128
BanII	GRGCYC	2 cut(s)	372, 426
Bbv12I	GWGCWC	3 cut(s)	372, 426, 850
BbvCI	CCTCAGC	2 cut(s)	491, 881
BbvI	GCAGC	4 cut(s)	188, 590, 856, 1194
BccI	CCATC	1 cut(s)	911
BciT130I	CCWGG	1 cut(s)	619
BciVI	GTATCC	1 cut(s)	618
BcoDI	GTCTC	2 cut(s)	1016, 1413
BfaI	CTAG	2 cut(s)	308, 1178
BfmI	CTRYAG	2 cut(s)	139, 501
BfuAI	ACCTGC	2 cut(s)	676, 697
BfuI	GTATCC	1 cut(s)	618
BisI	GCNGC	4 cut(s)	177, 604, 870, 1183
BlsI	GCNGC	4 cut(s)	178, 605, 871, 1184
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	4 cut(s)	115, 145, 360, 920
BmgT120I	GGNCC	5 cut(s)	115, 145, 206, 360, 920
BmiI	GGNNCC	6 cut(s)	146, 147, 361, 922, 1298, 1399
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	2 cut(s)	394, 896
Bpu10I	CCTNAGC	2 cut(s)	491, 881
BpuEI	CTTGAG	3 cut(s)	46, 731, 1397
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	4 cut(s)	94, 217, 485, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	1359, 1389
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 1306
Bse1I	ACTGG	2 cut(s)	10, 1351
Bse3DI	GCAATG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	4 cut(s)	94, 217, 485, 1053
BseGI	GGATG	4 cut(s)	307, 679, 1024, 1138
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	100, 1306
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	482, 872, 1401
BseNI	ACTGG	2 cut(s)	10, 1351
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	188, 590, 856, 1194
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	4 cut(s)	207, 907, 947, 1052
BsiHKAI	GWGCWC	3 cut(s)	372, 426, 850
BslFI	GGGAC	2 cut(s)	131, 373
BslI	CCNNNNNNNGG	2 cut(s)	100, 1306
BsmAI	GTCTC	2 cut(s)	1016, 1413
BsmFI	GGGAC	2 cut(s)	131, 373
BsmI	GAATGC	2 cut(s)	95, 1034
BsnI	GGCC	4 cut(s)	207, 907, 947, 1052
Bsp1286I	GDGCHC	3 cut(s)	372, 426, 850
Bsp143I	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
Bsp19I	CCATGG	3 cut(s)	94, 217, 485
BspACI	CCGC	3 cut(s)	160, 622, 671
BspANI	GGCC	4 cut(s)	207, 907, 947, 1052
BspCNI	CTCAG	3 cut(s)	483, 873, 1400
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	6 cut(s)	146, 147, 361, 922, 1298, 1399
BspMI	ACCTGC	2 cut(s)	676, 697
BspPI	GGATC	3 cut(s)	695, 1119, 1344
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	10, 1351
BssECI	CCNNGG	4 cut(s)	94, 217, 485, 1053
BssMI	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
BssT1I	CCWWGG	4 cut(s)	94, 217, 485, 1053
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	4 cut(s)	76, 1129, 1301, 1360
Bst6I	CTCTTC	2 cut(s)	287, 552
BstC8I	GCNNGC	3 cut(s)	409, 608, 1223
BstDEI	CTNAG	4 cut(s)	35, 491, 881, 1387
BstDSI	CCRYGG	3 cut(s)	94, 217, 485
BstF5I	GGATG	4 cut(s)	307, 679, 1024, 1138
BstKTI	GATC	6 cut(s)	63, 482, 703, 1114, 1230, 1339
BstMAI	GTCTC	2 cut(s)	1016, 1413
BstMBI	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 612, 668, 689
BstNI	CCWGG	1 cut(s)	619
BstNSI	RCATGY	2 cut(s)	975, 1177
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	139, 501
BstV1I	GCAGC	4 cut(s)	188, 590, 856, 1194
BstX2I	RGATCY	1 cut(s)	1336
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	1336
BsuI	GTATCC	1 cut(s)	618
BsuRI	GGCC	4 cut(s)	207, 907, 947, 1052
BtgI	CCRYGG	3 cut(s)	94, 217, 485
BtsCI	GGATG	4 cut(s)	307, 679, 1024, 1138
BtsIMutI	CAGTG	1 cut(s)	1125
BveI	ACCTGC	2 cut(s)	676, 697
Cac8I	GCNNGC	3 cut(s)	409, 608, 1223
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	5 cut(s)	115, 145, 206, 360, 920
Csp6I	GTAC	4 cut(s)	104, 585, 1069, 1361
CviQI	GTAC	4 cut(s)	104, 585, 1069, 1361
DdeI	CTNAG	4 cut(s)	35, 491, 881, 1387
DpnI	GATC	6 cut(s)	62, 481, 702, 1113, 1229, 1338
DpnII	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
Eam1104I	CTCTTC	2 cut(s)	287, 552
EarI	CTCTTC	2 cut(s)	287, 552
EciI	GGCGGA	1 cut(s)	637
Ecl136II	GAGCTC	2 cut(s)	370, 424
Eco130I	CCWWGG	4 cut(s)	94, 217, 485, 1053
Eco24I	GRGCYC	2 cut(s)	372, 426
Eco32I	GATATC	1 cut(s)	1258
Eco47I	GGWCC	4 cut(s)	115, 145, 360, 920
Eco53kI	GAGCTC	2 cut(s)	370, 424
Eco57I	CTGAAG	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	370, 424
EcoO109I	RGGNCCY	2 cut(s)	145, 206
EcoRII	CCWGG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	1258
EcoT14I	CCWWGG	4 cut(s)	94, 217, 485, 1053
EcoT38I	GRGCYC	2 cut(s)	372, 426
ErhI	CCWWGG	4 cut(s)	94, 217, 485, 1053
FalI	AAGNNNNNCTT	4 cut(s)	950, 982, 1152, 1184
FaqI	GGGAC	2 cut(s)	131, 373
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	4 cut(s)	177, 604, 870, 1183
FokI	GGATG	4 cut(s)	314, 686, 1031, 1145
FriOI	GRGCYC	2 cut(s)	372, 426
Fsp4HI	GCNGC	4 cut(s)	177, 604, 870, 1183
FspBI	CTAG	2 cut(s)	308, 1178
GluI	GCNGC	4 cut(s)	177, 604, 870, 1183
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	207, 907, 947, 1052
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	1 cut(s)	325
HphI	GGTGA	3 cut(s)	474, 778, 907
Hpy166II	GTNNAC	5 cut(s)	379, 836, 1123, 1265, 1327
Hpy188I	TCNGA	2 cut(s)	58, 1041
Hpy188III	TCNNGA	7 cut(s)	322, 332, 554, 566, 760, 815, 1342
Hpy8I	GTNNAC	5 cut(s)	379, 836, 1123, 1265, 1327
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	33, 229, 766
HpyCH4III	ACNGT	4 cut(s)	76, 1129, 1301, 1360
HpyCH4IV	ACGT	3 cut(s)	53, 283, 375
HpyCH4V	TGCA	6 cut(s)	281, 356, 386, 633, 872, 1092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 612, 668, 689
HpyF3I	CTNAG	4 cut(s)	35, 491, 881, 1387
HpySE526I	ACGT	3 cut(s)	53, 283, 375
KflI	GGGWCCC	1 cut(s)	145
Kzo9I	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
LmnI	GCTCC	3 cut(s)	620, 853, 1057
Lsp1109I	GCAGC	4 cut(s)	188, 590, 856, 1194
LweI	GCATC	2 cut(s)	394, 896
MaeI	CTAG	2 cut(s)	308, 1178
MaeII	ACGT	3 cut(s)	53, 283, 375
MalI	GATC	6 cut(s)	62, 481, 702, 1113, 1229, 1338
MboI	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
MboII	GAAGA	6 cut(s)	95, 98, 304, 539, 542, 721
MflI	RGATCY	1 cut(s)	1336
MhlI	GDGCHC	3 cut(s)	372, 426, 850
MluCI	AATT	6 cut(s)	191, 271, 314, 393, 1093, 1288
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	7 cut(s)	21, 198, 486, 605, 739, 876, 937
MroXI	GAANNNNTTC	3 cut(s)	339, 755, 782
MseI	TTAA	7 cut(s)	431, 912, 926, 1170, 1209, 1272, 1404
MslI	CAYNNNNRTG	3 cut(s)	395, 462, 843
MspA1I	CMGCKG	1 cut(s)	1117
MspR9I	CCNGG	1 cut(s)	619
Mva1269I	GAATGC	2 cut(s)	95, 1034
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	4 cut(s)	159, 612, 668, 689
NcoI	CCATGG	3 cut(s)	94, 217, 485
NdeII	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
NlaIV	GGNNCC	6 cut(s)	146, 147, 361, 922, 1298, 1399
NspI	RCATGY	2 cut(s)	975, 1177
PagI	TCATGA	1 cut(s)	565
PctI	GAATGC	2 cut(s)	95, 1034
PdmI	GAANNNNTTC	3 cut(s)	339, 755, 782
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	178, 605, 871, 1184
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	741
Psp124BI	GAGCTC	2 cut(s)	372, 426
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	6 cut(s)	146, 147, 361, 922, 1298, 1399
PspPI	GGNCC	5 cut(s)	115, 145, 206, 360, 920
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	1336
PsyI	GACNNNGTC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	1117
RsaI	GTAC	4 cut(s)	105, 586, 1070, 1362
RsaNI	GTAC	4 cut(s)	104, 585, 1069, 1361
RseI	CAYNNNNRTG	3 cut(s)	395, 462, 843
SacI	GAGCTC	2 cut(s)	372, 426
SaqAI	TTAA	7 cut(s)	431, 912, 926, 1170, 1209, 1272, 1404
SatI	GCNGC	4 cut(s)	177, 604, 870, 1183
Sau3AI	GATC	6 cut(s)	60, 479, 700, 1111, 1227, 1336
Sau96I	GGNCC	5 cut(s)	115, 145, 206, 360, 920
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	3 cut(s)	372, 426, 850
SfaNI	GCATC	2 cut(s)	394, 896
SfcI	CTRYAG	2 cut(s)	139, 501
SinI	GGWCC	4 cut(s)	115, 145, 360, 920
SmiMI	CAYNNNNRTG	3 cut(s)	395, 462, 843
SmlI	CTYRAG	3 cut(s)	25, 710, 1412
SmoI	CTYRAG	3 cut(s)	25, 710, 1412
Sse9I	AATT	6 cut(s)	191, 271, 314, 393, 1093, 1288
SsiI	CCGC	3 cut(s)	160, 622, 671
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	308, 1178
SstI	GAGCTC	2 cut(s)	372, 426
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	4 cut(s)	94, 217, 485, 1053
TaaI	ACNGT	4 cut(s)	76, 1129, 1301, 1360
TaiI	ACGT	3 cut(s)	56, 286, 378
TaqI	TCGA	2 cut(s)	372, 420
TasI	AATT	6 cut(s)	191, 271, 314, 393, 1093, 1288
TatI	WGTACW	1 cut(s)	1360
Tru1I	TTAA	7 cut(s)	431, 912, 926, 1170, 1209, 1272, 1404
Tru9I	TTAA	7 cut(s)	431, 912, 926, 1170, 1209, 1272, 1404
TscAI	CASTG	1 cut(s)	1132
TseI	GCWGC	4 cut(s)	176, 603, 869, 1182
TspDTI	ATGAA	6 cut(s)	96, 186, 318, 403, 459, 651
TspRI	CASTG	1 cut(s)	1132
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	4 cut(s)	115, 145, 360, 920
XapI	RAATTY	2 cut(s)	271, 1288
XceI	RCATGY	2 cut(s)	975, 1177
XmiI	GTMKAC	1 cut(s)	378
XmnI	GAANNNNTTC	3 cut(s)	339, 755, 782
XspI	CTAG	2 cut(s)	308, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.