RLG00000010060

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000821
Physical Location & Seq
Forward (+)
62514290 .. 62515909
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010060

Sequence Viewer

Length: 1350 bp
ATGGTAGAACCAACTGTTCAAAGCGAACAAATAGAGAATGCACCCGTATTGTTCTCGCAGGAATGGTGTATCTATAGGGTTCCCAGCCAGCTCCGCAATGTAGATGAAGCAGCATACACTCCTCAAACACTTTCAATAGGGCCTTTCCACCATGGAAATCCAAAACTGAGGGACATGGTGGCCCATAAGAACAAATATTATGAGTTGTTTTGCAGACGTTCTGGGAAAAGTGAGGATGAGCTAAGGAGCTTCATGATGGATCATCGAGAAACAGTTCTAAATTGTTATGCCGGTACCATTAATTGTGACATCGACTTTTTGAAACTCATCCTAGTTGACGCCTGCTTCATAATTGAACTCTTTTTGACTAATTCTGAACAAGAACAACATTGTGCACATTATTATATACTGAGATCACCGTGGCTGAGGAAAACGGTGGAGAGGGACCTGATACTGTTGGAAAATCAGCTTCCTTATTTTCTTCTTCAAAAGCTATATGACTTTGCCATACCTACCTTTTCCAATGGCCATCTTGGCAATGGAGACCAAGCACAAGGACATGCTCATAAAGATAGCACCAACAGTCAGCAATGCTGCTTCCCTTGCTTCCGGCCCGGTGATTTTCAAGAGAACCCCATCCAATCTGAACCTATTCAACATGGCTTTCTTGAACTTACCTGTAAGTTTTTTAAGGCATACACTAAGGGAAAATCTGTCAGGAATGGATTTGAGCCGAAACACTTCACTGATTTGGTTAGACACTTTCTATGTCCATACAAGGAACTGTTGTGGGTAAAAAATTATGATCAGCCCGTCAAAATTAAATACCATGCAACAAAGCTGAAGGTTGCAGGAGTGAAGTTTGTGCCACTTAGAGAACCATTTGTTATAAAGGAAGACCCTGTGTTGACGTTTAACTCAGCATGTTTGACACATAAGGAGTTGAAGCTTACAAGACTTTGGGCAGAGTATGAGGCAGGATGCATTTTTCGAAACACCATGGCCTTGGAACAACTTATTTATTTTTCGCTGATGAATCAACTCATTAACTCTGAGGAAGATGTGGATGTTCTGATTGAGGATGGAGTAATCTTCAACTTGCTAGGCAGCAACAAAGCAGTGGTAAACATGATTAGTTCCTTGTGTGAGCAGATTAAGGAGGATCACTCCTGCTATAGTGAGATCTGTCAAGACCTTAATAGTCATTATAAGACAGTTTGGTACCACCCCTTGGTAATAACGAGACAGGTTTACTTCAAGGATCTTTGGAGAGGCAGTACAGCTATACTAGGATTCGTTGTCCTAATTTTCACAATTCTTCAATCCCTTCAGGCATTCGAGTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

450

Amino Acids

52.22

Weight (kDa)

6.11

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 24 - 436 3e-81 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 890, 1209
Acc65I GGTACC 2 cut(s) 293, 1221
AccB1I GGYRCC 2 cut(s) 293, 1221
AccB7I CCANNNNNTGG 1 cut(s) 1231
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 267, 1170, 1269
AcoI YGGCCR 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 863, 1313
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 295, 1223, 1279
AfiI CCNNNNNNNGG 1 cut(s) 1231
AluBI AGCT 8 cut(s) 91, 241, 249, 469, 493, 841, 949, 1283
AluI AGCT 8 cut(s) 91, 241, 249, 469, 493, 841, 949, 1283
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 537, 1237
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 3 cut(s) 267, 1170, 1269
AoxI GGCC 5 cut(s) 140, 180, 526, 611, 1002
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 110, 594, 1107
AseI ATTAAT 1 cut(s) 300
Asp700I GAANNNNTTC 3 cut(s) 273, 651, 740
Asp718I GGTACC 2 cut(s) 293, 1221
AspS9I GGNCC 4 cut(s) 140, 181, 445, 612
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 408, 629
AsuII TTCGAA 1 cut(s) 991
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 2 cut(s) 293, 1221
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 3 cut(s) 122, 581, 1119
BccI CCATC 4 cut(s) 250, 537, 644, 1076
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 537, 1237
BfaI CTAG 3 cut(s) 332, 1103, 1289
BfmI CTRYAG 2 cut(s) 73, 1174
BglI GCCNNNNNGGC 1 cut(s) 534
BglII AGATCT 1 cut(s) 1182
BisI GCNGC 3 cut(s) 111, 595, 1108
BlsI GCNGC 3 cut(s) 112, 596, 1109
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 140, 181, 445, 612
BmiI GGNNCC 4 cut(s) 81, 295, 446, 1223
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 971
BpiI GAAGAC 1 cut(s) 903
BplI GAGNNNNNCTC 2 cut(s) 1151, 1183
Bpu10I CCTNAGC 2 cut(s) 242, 425
Bpu14I TTCGAA 1 cut(s) 991
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 5 cut(s) 151, 419, 999, 1005, 1230
BsaXI ACNNNNNCTCC 2 cut(s) 1261, 1291
Bsc4I CCNNNNNNNGG 1 cut(s) 1231
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 3 cut(s) 103, 544, 596
BseDI CCNNGG 5 cut(s) 151, 419, 999, 1005, 1230
BseGI GGATG 6 cut(s) 241, 327, 636, 986, 1072, 1087
BseLI CCNNNNNNNGG 1 cut(s) 1231
BseMI GCAATG 3 cut(s) 103, 544, 596
BseMII CTCAG 5 cut(s) 158, 401, 416, 933, 1044
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 122, 581, 1119
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 5 cut(s) 142, 182, 528, 613, 1004
BshNI GGYRCC 2 cut(s) 293, 1221
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 3 cut(s) 291, 610, 615
BslFI GGGAC 2 cut(s) 185, 458
BslI CCNNNNNNNGG 1 cut(s) 1231
BsmAI GTCTC 2 cut(s) 537, 1237
BsmFI GGGAC 2 cut(s) 185, 458
BsmI GAATGC 2 cut(s) 43, 1334
BsnI GGCC 5 cut(s) 142, 182, 528, 613, 1004
Bso31I GGTCTC 1 cut(s) 537
Bsp119I TTCGAA 1 cut(s) 991
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
Bsp19I CCATGG 2 cut(s) 151, 999
BspACI CCGC 1 cut(s) 94
BspANI GGCC 5 cut(s) 142, 182, 528, 613, 1004
BspCNI CTCAG 5 cut(s) 159, 402, 417, 932, 1045
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 81, 295, 446, 1223
BspPI GGATC 3 cut(s) 267, 1170, 1269
BspT104I TTCGAA 1 cut(s) 991
BspT107I GGYRCC 2 cut(s) 293, 1221
BspTNI GGTCTC 1 cut(s) 537
BsrDI GCAATG 3 cut(s) 103, 544, 596
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 5 cut(s) 151, 419, 999, 1005, 1230
BssMI GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 4 cut(s) 151, 999, 1005, 1230
Bst4CI ACNGT 8 cut(s) 16, 274, 420, 436, 456, 584, 786, 1216
BstACI GRCGYC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 89, 343
BstDEI CTNAG 8 cut(s) 167, 242, 410, 425, 702, 872, 919, 1053
BstDSI CCRYGG 3 cut(s) 151, 419, 999
BstF5I GGATG 6 cut(s) 241, 327, 636, 986, 1072, 1087
BstKTI GATC 6 cut(s) 262, 416, 808, 1165, 1185, 1264
BstMAI GTCTC 2 cut(s) 537, 1237
BstMBI GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
BstMWI GCNNNNNNNGC 3 cut(s) 93, 534, 603
BstNSI RCATGY 2 cut(s) 563, 927
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 2 cut(s) 73, 1174
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 122, 581, 1119
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 1182, 1261
BstXI CCANNNNNNTGG 1 cut(s) 1006
BstYI RGATCY 2 cut(s) 1182, 1261
BsuRI GGCC 5 cut(s) 142, 182, 528, 613, 1004
BtgI CCRYGG 3 cut(s) 151, 419, 999
BtsCI GGATG 6 cut(s) 241, 327, 636, 986, 1072, 1087
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 2 cut(s) 744, 1125
Cac8I GCNNGC 2 cut(s) 89, 343
CciI TCATGA 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 4 cut(s) 140, 181, 445, 612
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 294, 1222, 1278
CviAII CATG 9 cut(s) 152, 175, 253, 560, 659, 830, 924, 1000, 1129
CviQI GTAC 3 cut(s) 294, 1222, 1278
DdeI CTNAG 8 cut(s) 167, 242, 410, 425, 702, 872, 919, 1053
DpnI GATC 6 cut(s) 261, 415, 807, 1164, 1184, 1263
DpnII GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
EaeI YGGCCR 1 cut(s) 526
Eco130I CCWWGG 4 cut(s) 151, 999, 1005, 1230
Eco31I GGTCTC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 863, 1313
EcoO109I RGGNCCY 2 cut(s) 140, 445
EcoT14I CCWWGG 4 cut(s) 151, 999, 1005, 1230
EcoT22I ATGCAT 1 cut(s) 986
ErhI CCWWGG 4 cut(s) 151, 999, 1005, 1230
FaeI CATG 9 cut(s) 155, 178, 256, 563, 662, 833, 927, 1003, 1132
FaqI GGGAC 2 cut(s) 185, 458
FatI CATG 9 cut(s) 151, 174, 252, 559, 658, 829, 923, 999, 1128
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 111, 595, 1108
FokI GGATG 6 cut(s) 248, 314, 623, 993, 1079, 1094
Fsp4HI GCNGC 3 cut(s) 111, 595, 1108
FspBI CTAG 3 cut(s) 332, 1103, 1289
GluI GCNGC 3 cut(s) 111, 595, 1108
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 5 cut(s) 142, 182, 528, 613, 1004
HapII CCGG 3 cut(s) 291, 610, 615
HgaI GACGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 9 cut(s) 155, 178, 256, 563, 662, 833, 927, 1003, 1132
HincII GTYRAC 2 cut(s) 337, 909
HindII GTYRAC 2 cut(s) 337, 909
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 2 cut(s) 1036, 1293
HpaII CCGG 3 cut(s) 291, 610, 615
HphI GGTGA 2 cut(s) 408, 629
Hpy166II GTNNAC 5 cut(s) 337, 395, 909, 1126, 1252
Hpy188I TCNGA 4 cut(s) 376, 646, 1054, 1074
Hpy188III TCNNGA 6 cut(s) 253, 266, 626, 668, 718, 1190
Hpy8I GTNNAC 5 cut(s) 337, 395, 909, 1126, 1252
HpyAV CCTTC 2 cut(s) 838, 1337
HpyCH4III ACNGT 8 cut(s) 16, 274, 420, 436, 456, 584, 786, 1216
HpyCH4IV ACGT 2 cut(s) 217, 911
HpyCH4V TGCA 6 cut(s) 41, 213, 395, 833, 851, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 534, 603
HpyF3I CTNAG 8 cut(s) 167, 242, 410, 425, 702, 872, 919, 1053
HpySE526I ACGT 2 cut(s) 217, 911
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 9 cut(s) 155, 178, 256, 563, 662, 833, 927, 1003, 1132
KpnI GGTACC 2 cut(s) 297, 1225
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
LmnI GCTCC 2 cut(s) 96, 246
Lsp1109I GCAGC 3 cut(s) 122, 581, 1119
LweI GCATC 1 cut(s) 971
MaeI CTAG 3 cut(s) 332, 1103, 1289
MaeII ACGT 2 cut(s) 217, 911
MaeIII GTNAC 1 cut(s) 305
MalI GATC 6 cut(s) 261, 415, 807, 1164, 1184, 1263
MboI GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
MboII GAAGA 6 cut(s) 473, 476, 908, 1070, 1084, 1310
MflI RGATCY 2 cut(s) 1182, 1261
MhlI GDGCHC 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 8 cut(s) 280, 301, 351, 370, 799, 819, 1305, 1314
MluNI TGGCCA 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 986
MroXI GAANNNNTTC 3 cut(s) 273, 651, 740
MscI TGGCCA 1 cut(s) 528
MseI TTAA 8 cut(s) 300, 690, 822, 915, 1047, 1155, 1197, 1348
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 3 cut(s) 291, 610, 615
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 43, 1334
MwoI GCNNNNNNNGC 3 cut(s) 93, 534, 603
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 2 cut(s) 151, 999
NdeII GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
NlaIII CATG 9 cut(s) 155, 178, 256, 563, 662, 833, 927, 1003, 1132
NlaIV GGNNCC 4 cut(s) 81, 295, 446, 1223
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 986
NspI RCATGY 2 cut(s) 563, 927
NspV TTCGAA 1 cut(s) 991
PagI TCATGA 1 cut(s) 252
PctI GAATGC 2 cut(s) 43, 1334
PdmI GAANNNNTTC 3 cut(s) 273, 651, 740
PfeI GAWTC 2 cut(s) 1036, 1293
PflMI CCANNNNNTGG 1 cut(s) 1231
PkrI GCNGC 3 cut(s) 112, 596, 1109
PpuMI RGGWCCY 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 2 cut(s) 890, 1209
Psp5II RGGWCCY 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 4 cut(s) 81, 295, 446, 1223
PspPI GGNCC 4 cut(s) 140, 181, 445, 612
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 2 cut(s) 1182, 1261
RsaI GTAC 3 cut(s) 295, 1223, 1279
RsaNI GTAC 3 cut(s) 294, 1222, 1278
SaqAI TTAA 8 cut(s) 300, 690, 822, 915, 1047, 1155, 1197, 1348
SatI GCNGC 3 cut(s) 111, 595, 1108
Sau3AI GATC 6 cut(s) 259, 413, 805, 1162, 1182, 1261
Sau96I GGNCC 4 cut(s) 140, 181, 445, 612
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 971
SfcI CTRYAG 2 cut(s) 73, 1174
SfuI TTCGAA 1 cut(s) 991
SinI GGWCC 1 cut(s) 445
Sse9I AATT 8 cut(s) 280, 301, 351, 370, 799, 819, 1305, 1314
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 197
SspMI CTAG 3 cut(s) 332, 1103, 1289
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 4 cut(s) 151, 999, 1005, 1230
TaaI ACNGT 8 cut(s) 16, 274, 420, 436, 456, 584, 786, 1216
TaiI ACGT 2 cut(s) 220, 914
TaqI TCGA 4 cut(s) 265, 312, 991, 1338
TasI AATT 8 cut(s) 280, 301, 351, 370, 799, 819, 1305, 1314
TatI WGTACW 1 cut(s) 1277
TfiI GAWTC 2 cut(s) 1036, 1293
Tru1I TTAA 8 cut(s) 300, 690, 822, 915, 1047, 1155, 1197, 1348
Tru9I TTAA 8 cut(s) 300, 690, 822, 915, 1047, 1155, 1197, 1348
TscAI CASTG 2 cut(s) 751, 1125
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 3 cut(s) 110, 594, 1107
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 120, 241, 337, 1049
TspRI CASTG 2 cut(s) 751, 1125
Van91I CCANNNNNTGG 1 cut(s) 1231
VneI GTGCAC 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 445
VspI ATTAAT 1 cut(s) 300
XceI RCATGY 2 cut(s) 563, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmnI GAANNNNTTC 3 cut(s) 273, 651, 740
XspI CTAG 3 cut(s) 332, 1103, 1289
Zsp2I ATGCAT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.