Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

26781131 .. 26781691

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGAACCATAAAACAGAATATGTGGATTACTTTTTGGAGCGCACTCTAAAAGATAAGGCTGCAGTAAGAAGCTTCATTGAAGATCGTAAAGAGAAAATTCTTCATTGTTATGCAGGGACAATTGAGCTCGGTGAAGGCATTGACCCTGTTGATATAATTCTAGTTGATGCATGCTTCATCATTGGGCTCTTTCTGAGGAGGTCTGAAAAAGAAAATGGTGATAAATACACAAAGGATTACATATTAAGTACACCTTGGGTGTGGAAAGCTACAGAGCAGGATCTGATACTGTTTGAAAATCAGCTTCCTTATTTTCTTCTTCAAGAACTATATGACTTTGCATTTCCCGGAGCGCCTTCCATTTCCCATGCTGGAGAAGAGATACAATCACATAAATCCAGCACCGACAACAAGCGGAACTGCTTGGTTTGCTTCCCGCATTGCTTTCCTTGCTACTGTGGGATCCATCCCAACTATCGTCACGTTATAAAGATGGATCATGAGTCCAAGCCTGAACGTATTCATGATCAATGTTTTAAAACGCTGAGGCGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

186

Amino Acids

21.84

Weight (kDa)

5.98

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 117	2e-24	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AciI	CCGC	2 cut(s)	418, 440
AclWI	GGATC	4 cut(s)	291, 460, 473, 507
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	2 cut(s)	253, 556
AgsI	TTSAA	3 cut(s)	83, 299, 326
AluBI	AGCT	4 cut(s)	75, 130, 272, 307
AluI	AGCT	4 cut(s)	75, 130, 272, 307
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	4 cut(s)	291, 460, 473, 507
AlwNI	CAGNNNCTG	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	45, 358
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	146, 233
BamHI	GGATCC	1 cut(s)	465
BanII	GRGCYC	2 cut(s)	132, 192
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	477, 490
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	63, 273
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	188, 539
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	132, 192
Bsp143I	GATC	5 cut(s)	85, 283, 465, 499, 529
BspACI	CCGC	2 cut(s)	418, 440
BspCNI	CTCAG	2 cut(s)	189, 540
BspHI	TCATGA	2 cut(s)	502, 526
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	4 cut(s)	291, 460, 473, 507
BsrDI	GCAATG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	5 cut(s)	85, 283, 465, 499, 529
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	294, 461
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	197, 548
BstF5I	GGATG	1 cut(s)	469
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	45, 358
BstKTI	GATC	5 cut(s)	88, 286, 468, 502, 532
BstMBI	GATC	5 cut(s)	85, 283, 465, 499, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 453
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	63, 273
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	283, 465
BstYI	RGATCY	2 cut(s)	283, 465
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	2 cut(s)	502, 526
CfoI	GCGC	2 cut(s)	45, 358
Csp6I	GTAC	2 cut(s)	252, 555
CviAII	CATG	4 cut(s)	174, 371, 503, 527
CviJI	RGCY	7 cut(s)	62, 75, 130, 190, 272, 307, 514
CviKI_1	RGCY	7 cut(s)	62, 75, 130, 190, 272, 307, 514
CviQI	GTAC	2 cut(s)	252, 555
DdeI	CTNAG	2 cut(s)	197, 548
DpnI	GATC	5 cut(s)	87, 285, 467, 501, 531
DpnII	GATC	5 cut(s)	85, 283, 465, 499, 529
DraI	TTTAAA	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	132, 192
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	2 cut(s)	132, 192
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	4 cut(s)	177, 374, 506, 530
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	4 cut(s)	173, 370, 502, 526
FauI	CCCGC	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	132, 192
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	44, 357
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	45, 358
Hin1II	CATG	4 cut(s)	177, 374, 506, 530
Hin6I	GCGC	2 cut(s)	43, 356
HinP1I	GCGC	2 cut(s)	43, 356
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	146, 233
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	198, 208, 288
Hpy188III	TCNNGA	3 cut(s)	326, 503, 527
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	131, 369
HpyCH4III	ACNGT	2 cut(s)	294, 461
HpyCH4IV	ACGT	2 cut(s)	486, 520
HpyCH4V	TGCA	4 cut(s)	65, 116, 173, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 453
HpyF3I	CTNAG	2 cut(s)	197, 548
HpySE526I	ACGT	2 cut(s)	486, 520
Hsp92II	CATG	4 cut(s)	177, 374, 506, 530
HspAI	GCGC	2 cut(s)	43, 356
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	85, 283, 465, 499, 529
LmnI	GCTCC	2 cut(s)	40, 353
LpnPI	CCDG	7 cut(s)	102, 162, 266, 360, 364, 415, 528
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	486, 520
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	5 cut(s)	87, 285, 467, 501, 531
MboI	GATC	5 cut(s)	85, 283, 465, 499, 529
MboII	GAAGA	5 cut(s)	95, 95, 311, 314, 392
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	2 cut(s)	283, 465
MhlI	GDGCHC	2 cut(s)	132, 192
MluCI	AATT	3 cut(s)	99, 123, 159
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	3 cut(s)	192, 195, 543
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	248, 540
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	432, 453
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	5 cut(s)	85, 283, 465, 499, 529
NlaIII	CATG	4 cut(s)	177, 374, 506, 530
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	177
PagI	TCATGA	2 cut(s)	502, 526
PdmI	GAANNNNTTC	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	283, 465
RsaI	GTAC	2 cut(s)	253, 556
RsaNI	GTAC	2 cut(s)	252, 555
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	248, 540
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	5 cut(s)	85, 283, 465, 499, 529
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	132, 192
SetI	ASST	9 cut(s)	77, 132, 206, 259, 274, 309, 489, 523, 560
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	63, 273
SmiMI	CAYNNNNRTG	1 cut(s)	111
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	3 cut(s)	99, 123, 159
SsiI	CCGC	2 cut(s)	418, 440
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	294, 461
TaiI	ACGT	2 cut(s)	489, 523
TasI	AATT	3 cut(s)	99, 123, 159
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	248, 540
Tru9I	TTAA	2 cut(s)	248, 540
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	4 cut(s)	67, 95, 169, 515
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.