Rw1G016810

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000821
Physical Location & Seq
Forward (+)
37382715 .. 37383977
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016810.1

Sequence Viewer

Length: 1263 bp
ATGGAGGACCATAAAAAAAAATATGTGAATTACTTTTTTGACCGCACTTTGAAAGATAAGGCTGCGGTTAGAAGATTCATTGAAGAACGTCGAAAGAAAATTCTTCATTGTTATGCAGGGAAGATTGAGCTCGATGAAGGCACTGCTGTTGATATAATTCTAGATGATGCATGCTTCATCATTGAGCTCTTTCTGATGAAATCCGAAAGAGAAAATGGTGATGAATACAAAAAGGATTACATATTAAGTGCACCTTGGATGTGGAAAGCTGCAGAGCAGGATCTGATACTGTTTGAAAATCAGCTTCCTTATTTTCTTCTTCAAGAACTATATGACTTTGCATTTCCCGGAGCGTCTTCCATTTCCCATCCTGGAAAAGAAATACAGTCACATAGATCCAGCACCAATAACAAGCGGAACTGCTTGGTTTGCTTCCAATACTTCTTCCCTTGCTCCTGTGGGATCCATCCCAACGATCGTCACGTTATAAAGATGGATCATAAGTCTGAGCCTGATCATCACGTTATAAAGATGGATCATGAGTCCGAGCCTGAACGTATTCATGATCGCTTTCTTGAGCTGGCCTGTAATTTTTTCAAAAATTACAGTAACGGAAAATCTGTTAGGGTAAAACCAAAACATTTCACTGATTTGGTTAGACATTTTATGTGTCCAGAAGAAGAAATGAAGTGGAAAGAAAATACTACCAATAATCTATACAATATGAGAAAGCTGACGGCAGCAGGAGTTAACTTTATGCCATTTCCTAAAGATGGACGCTTTGTGGTGAAAGAAGGTAACATTTTAAAGTTGACATGTTTTAAAATGATGGACTTGAAGCTTTCACAGTTTTGTGTAAAGGATGAGACGGAATGTATTATTCGCAATGTCATGGCAGTTGAGCAGTTTCTGTATCCAGACGATGCTTATGTTTGCAATTACTTCTTGCTGATGGATAAACTTGTAGACACTGTGGAAGATGTGGATTTGCTGATTCGGAATAAAGTGATCATTAACATGCTAGGCAGCAACGAAGCAGTGGCGGAACTGGTGAACCACCTATGTGATCAGATTCTCGAAGAAAGATCCTGCTATGTTGATATTTGTAAAAAACTAAATGACCACTACGAGAATTCTTGGAACCGTTGCTTGACAACCCTGAAACGAGTTTACTTCAAGGATCTGTGGACAGGCAGTTCAACTTTTTTCGGTGTTGTTGTACTGATTTTCTCTATCATTGGATCCATTAAGTCATTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

420

Amino Acids

49.46

Weight (kDa)

6.44

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 410 1.7e-75 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 488, 527
AccI GTMKAC 1 cut(s) 966
AciI CCGC 4 cut(s) 43, 65, 415, 1043
AcsI RAATTY 2 cut(s) 99, 1132
AfaI GTAC 1 cut(s) 1221
AfiI CCNNNNNNNGG 1 cut(s) 773
AflIII ACRYGT 1 cut(s) 815
AgsI TTSAA 9 cut(s) 52, 83, 296, 323, 598, 838, 1177, 1200, 1258
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 1062
AloI GAACNNNNNNTCC 2 cut(s) 1180, 1212
AluBI AGCT 7 cut(s) 130, 187, 269, 304, 580, 733, 841
AluI AGCT 7 cut(s) 130, 187, 269, 304, 580, 733, 841
Alw21I GWGCWC 3 cut(s) 132, 189, 253
Alw26I GTCTC 1 cut(s) 860
Alw44I GTGCAC 1 cut(s) 249
AlwNI CAGNNNCTG 2 cut(s) 283, 910
AoxI GGCC 1 cut(s) 582
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 4 cut(s) 62, 269, 740, 1026
ApoI RAATTY 2 cut(s) 99, 1132
Asp700I GAANNNNTTC 1 cut(s) 558
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 230, 799, 1063
AvaII GGWCC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 253
BamHI GGATCC 2 cut(s) 462, 1241
BanII GRGCYC 2 cut(s) 132, 189
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 3 cut(s) 132, 189, 253
BbvI GCAGC 4 cut(s) 49, 256, 752, 1038
BccI CCATC 7 cut(s) 375, 474, 487, 526, 767, 823, 946
BceAI ACGGC 1 cut(s) 753
BciT130I CCWGG 1 cut(s) 372
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 3 cut(s) 514, 1008, 1066
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 860
BfaI CTAG 2 cut(s) 161, 1022
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 4 cut(s) 63, 270, 741, 1027
BlsI GCNGC 4 cut(s) 64, 271, 742, 1028
Bme1390I CCNGG 2 cut(s) 348, 372
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 464, 1142, 1243
BmrFI CCNGG 2 cut(s) 348, 372
BmsI GCATC 2 cut(s) 157, 913
BpiI GAAGAC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 773
Bse1I ACTGG 1 cut(s) 1053
Bse3DI GCAATG 1 cut(s) 892
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 4 cut(s) 264, 367, 466, 868
BseLI CCNNNNNNNGG 1 cut(s) 773
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 4 cut(s) 49, 256, 752, 1038
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 1 cut(s) 584
BsiEI CGRYCG 1 cut(s) 478
BsiHKAI GWGCWC 3 cut(s) 132, 189, 253
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 773
BsmAI GTCTC 1 cut(s) 860
BsmBI CGTCTC 1 cut(s) 860
BsnI GGCC 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 132, 189, 253
BspACI CCGC 4 cut(s) 43, 65, 415, 1043
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 499
BspHI TCATGA 2 cut(s) 538, 562
BspLI GGNNCC 3 cut(s) 464, 1142, 1243
BspMAI CTGCAG 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 892
BsrI ACTGG 1 cut(s) 1053
BssECI CCNNGG 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 6 cut(s) 291, 387, 608, 849, 973, 1145
BstC8I GCNNGC 2 cut(s) 172, 582
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 4 cut(s) 264, 367, 466, 868
BstMAI GTCTC 1 cut(s) 860
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 3 cut(s) 174, 819, 1021
BstSCI CCNGG 2 cut(s) 346, 370
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 4 cut(s) 49, 256, 752, 1038
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 6 cut(s) 280, 395, 462, 1085, 1180, 1241
BstYI RGATCY 6 cut(s) 280, 395, 462, 1085, 1180, 1241
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 1 cut(s) 584
BtsCI GGATG 4 cut(s) 264, 367, 466, 868
BtsI GCAGTG 2 cut(s) 141, 1044
BtsIMutI CAGTG 4 cut(s) 141, 645, 969, 1044
Cac8I GCNNGC 2 cut(s) 172, 582
CaiI CAGNNNCTG 2 cut(s) 283, 910
CciI TCATGA 2 cut(s) 538, 562
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 2 cut(s) 342, 786
Csp6I GTAC 1 cut(s) 1220
CviAII CATG 6 cut(s) 171, 539, 563, 816, 892, 1018
CviQI GTAC 1 cut(s) 1220
DdeI CTNAG 1 cut(s) 507
DraI TTTAAA 2 cut(s) 807, 823
EciI GGCGGA 1 cut(s) 1058
Ecl136II GAGCTC 2 cut(s) 130, 187
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 2 cut(s) 132, 189
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 2 cut(s) 130, 187
EcoICRI GAGCTC 2 cut(s) 130, 187
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 2 cut(s) 132, 189
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 860
FaeI CATG 6 cut(s) 174, 542, 566, 819, 895, 1021
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 6 cut(s) 170, 538, 562, 815, 891, 1017
FbaI TGATCA 3 cut(s) 514, 1008, 1066
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 4 cut(s) 63, 270, 741, 1027
FokI GGATG 4 cut(s) 271, 354, 453, 875
FriOI GRGCYC 2 cut(s) 132, 189
Fsp4HI GCNGC 4 cut(s) 63, 270, 741, 1027
FspBI CTAG 2 cut(s) 161, 1022
GluI GCNGC 4 cut(s) 63, 270, 741, 1027
HaeIII GGCC 1 cut(s) 584
HapII CCGG 1 cut(s) 348
HgaI GACGC 2 cut(s) 342, 786
Hin1II CATG 6 cut(s) 174, 542, 566, 819, 895, 1021
HincII GTYRAC 2 cut(s) 751, 813
HindII GTYRAC 2 cut(s) 751, 813
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 4 cut(s) 75, 542, 994, 1072
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 230, 799, 1063
Hpy166II GTNNAC 7 cut(s) 251, 751, 813, 967, 1054, 1171, 1188
Hpy188I TCNGA 7 cut(s) 195, 205, 285, 508, 547, 999, 1071
Hpy188III TCNNGA 8 cut(s) 161, 323, 539, 563, 575, 674, 917, 1076
Hpy8I GTNNAC 7 cut(s) 251, 751, 813, 967, 1054, 1171, 1188
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 131, 788
HpyCH4III ACNGT 6 cut(s) 291, 387, 608, 849, 973, 1145
HpyCH4IV ACGT 4 cut(s) 88, 483, 522, 556
HpyCH4V TGCA 6 cut(s) 116, 170, 251, 272, 341, 936
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 4 cut(s) 88, 483, 522, 556
Hsp92II CATG 6 cut(s) 174, 542, 566, 819, 895, 1021
Ksp22I TGATCA 3 cut(s) 514, 1008, 1066
KspAI GTTAAC 1 cut(s) 751
LmnI GCTCC 2 cut(s) 350, 458
Lsp1109I GCAGC 4 cut(s) 49, 256, 752, 1038
LweI GCATC 2 cut(s) 157, 913
MaeI CTAG 2 cut(s) 161, 1022
MaeII ACGT 4 cut(s) 88, 483, 522, 556
MaeIII GTNAC 4 cut(s) 387, 479, 608, 797
MflI RGATCY 6 cut(s) 280, 395, 462, 1085, 1180, 1241
MhlI GDGCHC 3 cut(s) 132, 189, 253
MluCI AATT 7 cut(s) 28, 99, 156, 589, 601, 937, 1132
MlyI GAGTC 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 6 cut(s) 245, 750, 806, 822, 1014, 1248
MslI CAYNNNNRTG 3 cut(s) 111, 1016, 1062
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 348, 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 429
NciI CCSGG 1 cut(s) 348
NlaIII CATG 6 cut(s) 174, 542, 566, 819, 895, 1021
NlaIV GGNNCC 3 cut(s) 464, 1142, 1243
NmuCI GTSAC 2 cut(s) 387, 479
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 174, 819, 1021
OliI CACNNNNGTG 1 cut(s) 1062
PaeI GCATGC 1 cut(s) 174
PagI TCATGA 2 cut(s) 538, 562
PciI ACATGT 1 cut(s) 815
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 3 cut(s) 75, 994, 1072
PfoI TCCNGGA 2 cut(s) 346, 370
PkrI GCNGC 4 cut(s) 64, 271, 742, 1028
Ple19I CGATCG 1 cut(s) 478
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PscI ACATGT 1 cut(s) 815
PsiI TTATAA 2 cut(s) 488, 527
Psp124BI GAGCTC 2 cut(s) 132, 189
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 464, 1142, 1243
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 2 cut(s) 283, 910
PsuI RGATCY 6 cut(s) 280, 395, 462, 1085, 1180, 1241
PvuI CGATCG 1 cut(s) 478
RsaI GTAC 1 cut(s) 1221
RsaNI GTAC 1 cut(s) 1220
RseI CAYNNNNRTG 3 cut(s) 111, 1016, 1062
SacI GAGCTC 2 cut(s) 132, 189
SaqAI TTAA 6 cut(s) 245, 750, 806, 822, 1014, 1248
SatI GCNGC 4 cut(s) 63, 270, 741, 1027
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 348, 372
SduI GDGCHC 3 cut(s) 132, 189, 253
SfaNI GCATC 2 cut(s) 157, 913
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 3 cut(s) 111, 1016, 1062
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 1 cut(s) 174
Sse9I AATT 7 cut(s) 28, 99, 156, 589, 601, 937, 1132
SsiI CCGC 4 cut(s) 43, 65, 415, 1043
SspMI CTAG 2 cut(s) 161, 1022
SstI GAGCTC 2 cut(s) 132, 189
StyD4I CCNGG 2 cut(s) 346, 370
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 6 cut(s) 291, 387, 608, 849, 973, 1145
TaiI ACGT 4 cut(s) 91, 486, 525, 559
TaqI TCGA 3 cut(s) 91, 132, 1077
TasI AATT 7 cut(s) 28, 99, 156, 589, 601, 937, 1132
TatI WGTACW 1 cut(s) 1219
TfiI GAWTC 3 cut(s) 75, 994, 1072
Tru1I TTAA 6 cut(s) 245, 750, 806, 822, 1014, 1248
Tru9I TTAA 6 cut(s) 245, 750, 806, 822, 1014, 1248
TscAI CASTG 4 cut(s) 148, 652, 976, 1044
TseFI GTSAC 2 cut(s) 387, 479
TseI GCWGC 4 cut(s) 62, 269, 740, 1026
Tsp45I GTSAC 2 cut(s) 387, 479
TspDTI ATGAA 8 cut(s) 67, 95, 150, 166, 212, 237, 551, 701
TspGWI ACGGA 2 cut(s) 627, 884
TspRI CASTG 4 cut(s) 148, 652, 976, 1044
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 99, 1132
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 3 cut(s) 174, 819, 1021
XmiI GTMKAC 1 cut(s) 966
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 161, 1022
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.