AT2G44930

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000821
Physical Location & Seq
Reverse (-)
18529488 .. 18531752
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44930.1

Sequence Viewer

Length: 1548 bp
ATGGCCAAGGAGAAGCAACCGCTGATGGAGGATCTAGAACAAGGAATACAGCTAAGTACGAGGGAGAATGAAACCGGATCTGGTAAAGTGGGTAGATGGAGCGAAGGATTTCGTGATCCATTGGTTTCTAAACACGGAACAGCTGAGAAAGCAAAGATTGTTTCTGTCACGACTAAACCGTATAAACCGGATTCTTGCTATGAATCTGAGATTTCCGGTATATGGCCTTCTTCGTTTAGCAAAGAGTATTGTTGCATCTATAGAGTACCTAACCGGTTAAGGAGAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCATCGGTCCACTTCAACATTCTAAGAAAGCTAATGCCCTTGAGCTTTCCAAAACCGATTTAAGATATTTGGACTATATGAACATGGAGCTTCACAAGAAGAAGTACCTTAATGCTATTGCAAATAAATATGGGGATCAAATTATCGAAGTTTTCAAGGAGATCATAGAAACAAGTGAGAAATTCGTTAGAGAAAGCTACGCCGAGTCAACGGACTGGATCAAACCTCAAGATTTCGTTGATATGATCCTTCTCGACTCGGTGTTCATACTAGGGGTCTTTATTCAGGCTGAAACTACTCAAAACATCAAGAAGAAAGAAGAAATTCTTTTCCATGAAGAAGATATTATTTTCCAGGAGCCTTGTCTCATAACCACTATTTTAGAAGACCTAATCTTACTCGAGAACCAACTCCCTTATGTCCTTTTAGAGAAACTCTCTAAACCTTTTTTCGCAAATCTTAAAACCAAGGAAACTTTCCGTGACATTATCCTTCGAGCTTTTAGGTTGAAAGGAGAGATCAAAGAAGGAACGAATTTCCGTCATTTTACAGATTTGTTCAGACGTGTCCGTGTGGAAACACTTTGTTTGACAAAAGAACAAATCAAAAGCGCAAAGGATAAGCCACCGGAGATCATAAAGAGTCTGCACAACGCAGACAAACTAGACAGTGCTGGAGTGGATTTTGTGCGTCTGGAAAGAAAAAACGATTTATCGTTGGTGATAACTTTCGAACGCGGAATCTTGGAAATACCTTGTTTCTTAGCGGACGACAACACCGAGAGGATTATGAGGAACTTAATGGCCCTCGAGCAATGTCATTACCCTCTCACTGCTTATGTTTGTAACTACATAGCTTTCTTGGATTTTCTTATCGACACCGACCAAGACGTTGACTTGCTCGTCAAGAAAGGAGTTATAAAGAACTGGTTAGGACATCAAGCATCGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGGGCTTGTGGATTTTGGATCTCACTATTACGGTATAGCCGATAGACTCAACAAACACTACGAAAGCCGTCGCAATAGATCCATAGCCACACTCCGGCGAGTTTACTTTAAAGATCTTTGGACCGGAACTGCCACCATTGCCGCCGCCGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGCTTCCGTACTCCAGGTGACGCAGAAGGATAATAATTCTCCACCGCCTCCGGCTATGTTCCGAGGACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

515

Amino Acids

59.21

Weight (kDa)

6.82

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 86 - 486 1.7e-104 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1238
AasI GACNNNNNNGTC 1 cut(s) 1220
AccII CGCG 1 cut(s) 1056
AciI CCGC 7 cut(s) 20, 1056, 1085, 1271, 1437, 1440, 1520
AclWI GGATC 8 cut(s) 39, 85, 110, 462, 545, 559, 1321, 1368
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 500, 642, 853
AfaI GTAC 4 cut(s) 58, 267, 425, 1485
AfiI CCNNNNNNNGG 2 cut(s) 222, 1389
AflIII ACRYGT 1 cut(s) 883
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 335, 475, 829
AjiI CACGTC 1 cut(s) 884
AjnI CCWGG 2 cut(s) 672, 1488
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 9 cut(s) 52, 143, 350, 364, 409, 516, 818, 1175, 1288
AluI AGCT 9 cut(s) 52, 143, 350, 364, 409, 516, 818, 1175, 1288
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 8 cut(s) 39, 85, 110, 462, 545, 559, 1321, 1368
Ama87I CYCGRG 2 cut(s) 719, 1127
AoxI GGCC 3 cut(s) 3, 224, 1122
ApoI RAATTY 3 cut(s) 500, 642, 853
AsiGI ACCGGT 1 cut(s) 273
Asp700I GAANNNNTTC 2 cut(s) 108, 642
AspLEI GCGC 1 cut(s) 932
AspS9I GGNCC 4 cut(s) 326, 1123, 1416, 1541
AsuHPI GGTGA 2 cut(s) 1051, 1504
AsuII TTCGAA 1 cut(s) 1050
AvaI CYCGRG 2 cut(s) 719, 1127
AvaII GGWCC 3 cut(s) 326, 1416, 1541
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BauI CACGAG 1 cut(s) 1451
BbsI GAAGAC 1 cut(s) 711
BccI CCATC 2 cut(s) 19, 90
BceAI ACGGC 2 cut(s) 1347, 1427
BciT130I CCWGG 2 cut(s) 674, 1490
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 3 cut(s) 35, 590, 983
BfmI CTRYAG 1 cut(s) 259
BglII AGATCT 1 cut(s) 1408
BisI GCNGC 2 cut(s) 1437, 1440
BlsI GCNGC 2 cut(s) 1438, 1441
Bme1390I CCNGG 2 cut(s) 674, 1490
Bme18I GGWCC 3 cut(s) 326, 1416, 1541
BmeT110I CYCGRG 2 cut(s) 719, 1127
BmgBI CACGTC 1 cut(s) 884
BmgT120I GGNCC 4 cut(s) 326, 1123, 1416, 1541
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 2 cut(s) 674, 1490
BmsI GCATC 3 cut(s) 264, 303, 1271
BpiI GAAGAC 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 740, 772
BpmI CTGGAG 2 cut(s) 1014, 1472
Bpu14I TTCGAA 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 380, 531
BsaJI CCNNGG 3 cut(s) 6, 786, 1537
BsaWI WCCGGW 6 cut(s) 74, 187, 215, 273, 946, 1418
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 1389
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 539, 1250
Bse3DI GCAATG 2 cut(s) 1139, 1431
BseBI CCWGG 2 cut(s) 674, 1490
BseDI CCNNGG 3 cut(s) 6, 786, 1537
BseLI CCNNNNNNNGG 2 cut(s) 222, 1389
BseMI GCAATG 2 cut(s) 1139, 1431
BseMII CTCAG 3 cut(s) 135, 198, 323
BseNI ACTGG 2 cut(s) 539, 1250
BseRI GAGGAG 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 950
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 3 cut(s) 5, 226, 1124
BshTI ACCGGT 1 cut(s) 273
BsiHKCI CYCGRG 2 cut(s) 719, 1127
BsiSI CCGG 8 cut(s) 75, 188, 216, 274, 947, 1390, 1419, 1526
BslFI GGGAC 1 cut(s) 1483
BslI CCNNNNNNNGG 2 cut(s) 222, 1389
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 1483
BsnI GGCC 3 cut(s) 5, 226, 1124
BsoBI CYCGRG 2 cut(s) 719, 1127
Bsp119I TTCGAA 1 cut(s) 1050
BspACI CCGC 7 cut(s) 20, 1056, 1085, 1271, 1437, 1440, 1520
BspANI GGCC 3 cut(s) 5, 226, 1124
BspCNI CTCAG 3 cut(s) 136, 199, 322
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 1 cut(s) 678
BspPI GGATC 8 cut(s) 39, 85, 110, 462, 545, 559, 1321, 1368
BspT104I TTCGAA 1 cut(s) 1050
BsrDI GCAATG 2 cut(s) 1139, 1431
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 2 cut(s) 539, 1250
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 6, 786, 1537
BssSI CACGAG 1 cut(s) 1451
BssT1I CCWWGG 2 cut(s) 6, 786
Bst2BI CACGAG 1 cut(s) 1451
Bst2UI CCWGG 2 cut(s) 674, 1490
Bst4CI ACNGT 5 cut(s) 180, 989, 1328, 1474, 1545
BstBI TTCGAA 1 cut(s) 1050
BstDEI CTNAG 6 cut(s) 53, 144, 207, 309, 342, 1081
BstFNI CGCG 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 932
BstMAI GTCTC 1 cut(s) 689
BstMWI GCNNNNNNNGC 3 cut(s) 149, 1268, 1433
BstNI CCWGG 2 cut(s) 674, 1490
BstSCI CCNGG 2 cut(s) 672, 1488
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 1056
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 5 cut(s) 31, 77, 1313, 1373, 1408
BstYI RGATCY 5 cut(s) 31, 77, 1313, 1373, 1408
BsuRI GGCC 3 cut(s) 5, 226, 1124
BtrI CACGTC 1 cut(s) 884
BtsI GCAGTG 1 cut(s) 1149
BtsIMutI CAGTG 2 cut(s) 994, 1149
CfoI GCGC 1 cut(s) 932
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 326, 1123, 1416, 1541
CseI GACGC 2 cut(s) 998, 1504
Csp6I GTAC 4 cut(s) 57, 266, 424, 1484
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 2 cut(s) 403, 653
CviQI GTAC 4 cut(s) 57, 266, 424, 1484
DdeI CTNAG 6 cut(s) 53, 144, 207, 309, 342, 1081
DraI TTTAAA 1 cut(s) 1405
DrdI GACNNNNNNGTC 1 cut(s) 1220
DseDI GACNNNNNNGTC 1 cut(s) 1220
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 1286
Eco130I CCWWGG 2 cut(s) 6, 786
Eco47I GGWCC 3 cut(s) 326, 1416, 1541
Eco88I CYCGRG 2 cut(s) 719, 1127
EcoRII CCWGG 2 cut(s) 672, 1488
EcoT14I CCWWGG 2 cut(s) 6, 786
ErhI CCWWGG 2 cut(s) 6, 786
FaeI CATG 2 cut(s) 406, 656
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 1 cut(s) 1483
FatI CATG 2 cut(s) 402, 652
Fnu4HI GCNGC 2 cut(s) 1437, 1440
Fsp4HI GCNGC 2 cut(s) 1437, 1440
FspBI CTAG 3 cut(s) 35, 590, 983
GlaI GCGC 1 cut(s) 931
GluI GCNGC 2 cut(s) 1437, 1440
GsuI CTGGAG 2 cut(s) 1014, 1472
HaeIII GGCC 3 cut(s) 5, 226, 1124
HapII CCGG 8 cut(s) 75, 188, 216, 274, 947, 1390, 1419, 1526
HgaI GACGC 2 cut(s) 998, 1504
HhaI GCGC 1 cut(s) 932
Hin1II CATG 2 cut(s) 406, 656
Hin6I GCGC 1 cut(s) 930
HinP1I GCGC 1 cut(s) 930
HincII GTYRAC 3 cut(s) 528, 1213, 1458
HindII GTYRAC 3 cut(s) 528, 1213, 1458
HinfI GANTC 7 cut(s) 191, 203, 524, 575, 961, 1059, 1341
HpaII CCGG 8 cut(s) 75, 188, 216, 274, 947, 1390, 1419, 1526
HphI GGTGA 2 cut(s) 1051, 1504
Hpy166II GTNNAC 6 cut(s) 329, 528, 1213, 1282, 1399, 1458
Hpy188I TCNGA 4 cut(s) 208, 312, 881, 1538
Hpy8I GTNNAC 6 cut(s) 329, 528, 1213, 1282, 1399, 1458
Hpy99I CGWCG 1 cut(s) 1368
HpyAV CCTTC 6 cut(s) 98, 237, 578, 821, 839, 1495
HpyCH4III ACNGT 5 cut(s) 180, 989, 1328, 1474, 1545
HpyCH4IV ACGT 2 cut(s) 883, 1209
HpyCH4V TGCA 3 cut(s) 255, 440, 967
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 1268, 1433
HpyF3I CTNAG 6 cut(s) 53, 144, 207, 309, 342, 1081
HpySE526I ACGT 2 cut(s) 883, 1209
Hsp92II CATG 2 cut(s) 406, 656
HspAI GCGC 1 cut(s) 930
LmnI GCTCC 3 cut(s) 99, 406, 676
LweI GCATC 3 cut(s) 264, 303, 1271
MaeI CTAG 3 cut(s) 35, 590, 983
MaeII ACGT 2 cut(s) 883, 1209
MaeIII GTNAC 4 cut(s) 166, 800, 1163, 1492
MboII GAAGA 7 cut(s) 222, 430, 643, 650, 668, 671, 716
MflI RGATCY 5 cut(s) 31, 77, 1313, 1373, 1408
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 459, 500, 642, 853, 1510
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 533, 569, 970, 1335
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 108, 642
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 278, 288, 380, 429, 780, 1118, 1404
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 22, 143
MspI CCGG 8 cut(s) 75, 188, 216, 274, 947, 1390, 1419, 1526
MspR9I CCNGG 2 cut(s) 674, 1490
MvaI CCWGG 2 cut(s) 674, 1490
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 3 cut(s) 149, 1268, 1433
NlaIII CATG 2 cut(s) 406, 656
NlaIV GGNNCC 1 cut(s) 678
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 3 cut(s) 166, 800, 1492
NspV TTCGAA 1 cut(s) 1050
PaeR7I CTCGAG 2 cut(s) 719, 1127
PcsI WCGNNNNNNNCGW 3 cut(s) 176, 1095, 1332
PdmI GAANNNNTTC 2 cut(s) 108, 642
PfeI GAWTC 3 cut(s) 191, 203, 1059
PfoI TCCNGGA 1 cut(s) 672
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 2 cut(s) 1438, 1441
PleI GAGTC 4 cut(s) 532, 569, 969, 1335
PpsI GAGTC 4 cut(s) 532, 569, 969, 1335
PsiI TTATAA 1 cut(s) 1238
Psp6I CCWGG 2 cut(s) 672, 1488
PspGI CCWGG 2 cut(s) 672, 1488
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 4 cut(s) 326, 1123, 1416, 1541
PspXI VCTCGAGB 1 cut(s) 1127
PsrI GAACNNNNNNTAC 2 cut(s) 30, 62
PsuI RGATCY 5 cut(s) 31, 77, 1313, 1373, 1408
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 4 cut(s) 58, 267, 425, 1485
RsaNI GTAC 4 cut(s) 57, 266, 424, 1484
SaqAI TTAA 7 cut(s) 278, 288, 380, 429, 780, 1118, 1404
SatI GCNGC 2 cut(s) 1437, 1440
Sau96I GGNCC 4 cut(s) 326, 1123, 1416, 1541
SchI GAGTC 4 cut(s) 533, 569, 970, 1335
ScrFI CCNGG 2 cut(s) 674, 1490
SfaNI GCATC 3 cut(s) 264, 303, 1271
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 2 cut(s) 719, 1127
SfuI TTCGAA 1 cut(s) 1050
SinI GGWCC 3 cut(s) 326, 1416, 1541
SlaI CTCGAG 2 cut(s) 719, 1127
SmlI CTYRAG 4 cut(s) 359, 546, 719, 1127
SmoI CTYRAG 4 cut(s) 359, 546, 719, 1127
Sse9I AATT 5 cut(s) 459, 500, 642, 853, 1510
SsiI CCGC 7 cut(s) 20, 1056, 1085, 1271, 1437, 1440, 1520
SspMI CTAG 3 cut(s) 35, 590, 983
StyD4I CCNGG 2 cut(s) 672, 1488
StyI CCWWGG 2 cut(s) 6, 786
TaaI ACNGT 5 cut(s) 180, 989, 1328, 1474, 1545
TaiI ACGT 2 cut(s) 886, 1212
TaqI TCGA 7 cut(s) 465, 573, 720, 814, 1050, 1128, 1194
TaqII GACCGA 1 cut(s) 314
TasI AATT 5 cut(s) 459, 500, 642, 853, 1510
TauI GCSGC 2 cut(s) 1439, 1442
TfiI GAWTC 3 cut(s) 191, 203, 1059
Tru1I TTAA 7 cut(s) 278, 288, 380, 429, 780, 1118, 1404
Tru9I TTAA 7 cut(s) 278, 288, 380, 429, 780, 1118, 1404
TscAI CASTG 2 cut(s) 994, 1156
TseFI GTSAC 3 cut(s) 166, 800, 1492
Tsp45I GTSAC 3 cut(s) 166, 800, 1492
TspDTI ATGAA 5 cut(s) 84, 216, 413, 574, 669
TspGWI ACGGA 6 cut(s) 150, 545, 788, 848, 878, 1471
TspRI CASTG 2 cut(s) 994, 1156
VpaK11BI GGWCC 3 cut(s) 326, 1416, 1541
XapI RAATTY 3 cut(s) 500, 642, 853
XbaI TCTAGA 1 cut(s) 34
XhoI CTCGAG 2 cut(s) 719, 1127
XmnI GAANNNNTTC 2 cut(s) 108, 642
XspI CTAG 3 cut(s) 35, 590, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.