Rw1G016820

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000821
Physical Location & Seq
Forward (+)
37403950 .. 37407277
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016820.1

Sequence Viewer

Length: 1395 bp
ATGGAGGATCAAGAATACAATGACGCGGTACCAGTGTTCTACCAACCTGAGCAGTGGTGCATCTACAGGGTCCCAAACAAACTCCGCAATGTAAATTCAGCATCATATACTCCTCAGTTGCTTTCCATAGGCCCTTTTCATCATGGGACACTAGAGCTGAAGGACACGGAGAACAACAAAAGAATATATTGTGAGAATTTCTGTGCAGGTTCTTTGAAGAGTATAGATGAACTAAAACTCTTCATCAAAAGTCGTCTTCAAGACATTGTTGGTTGTTATGCAGGGACCATCAATCAGCAAGACAGCGAACTTGTGGACCTGATTCTAGTGGATGCTTGCTTCATCATTGAACTTTTTTTGGTGAACTCTGAAGAAACAACTGAAAATTATTATCACTTATTCAGATCACCATGGCTGAAGAAAGCTCTAGAGCAGGATTTGATACTGTTTGAAAATCAGCTTCCTTATTCTCTTCTTCAAGACCTATACGATTTTGCCATGCCTGCCTCTTGCTTTGATCCCCCAAATGAAGTAAAACTACCAAAACAGCCCCATATCGGTCATGAACAGCGATACTGTTTGTCTTGCCTCCATCACTGCTTGCGTTGCTTCCGTAGGACCCCTCTTCGTGATTATTCTATAGGGGTTGCCAACGCAGAACCTGTTCATCCCTTTCTTAAGCTTACCTGTGAATTCTTCAAAGAGTACAGCAAGGGAAGATTTGTCAGGAATGGAGTATCACCGAAACATTTTACTGATTTGGTAAGACACTTTCTTTGTCCAGAAGAAGAAATGACCTGGGTAGATGTTCGTCTTATCCCTGTCAAAACTATATATGATGCAAGAAAGCTGAAGGAGGCAGGGGTAAACTTCAGGCCACTTAAAGAAGCAGGCTTTGTCATAAAAGGAGATGAGTCCCACAAATTTTGTAATTTCAATGTAGCTTGTTTTACAAGTATGGACATGAAGCTCAACCAATTTCGGGTGAAGGATCAAACTGAATGCGTTATCAGAAACGTCATGGCCTTGGAGCAGTTTTTGTATCCAGAGTCGGCTTATATTTGCAAATATTTTTTGCTGATGGATAAACTTGTGGACAATGTGGAGGATGTGAACTTGCTGATTAGTGGAGTGATTGTTAACAAGCTAGCAGGCTGCAACGAATTGGTAGTGAACCTGATTAATACACTTTGTCTGGAGATTATGGATGATATTTGCTGCTATGGTGGTGTCTGTAACCAGCTCAATAAGCACTACGGGATCAGTTTTTGGAAACGTCATGTGGCTATCCTGAAACGAGTTTACTTCAAGGATCTTTGGACTGCTAGTTCGACTATACTTGGGTTTTTTGTCCTGATTTTCTCAATCATTGGAACCATTAAGTCGCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

464

Amino Acids

53.79

Weight (kDa)

6.25

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 21 - 453 1.2e-82 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 26, 85
AclWI GGATC 5 cut(s) 15, 512, 999, 1268, 1320
AcsI RAATTY 4 cut(s) 94, 196, 692, 923
AcuI CTGAAG 5 cut(s) 179, 390, 437, 856, 872
AfaI GTAC 2 cut(s) 30, 707
AfiI CCNNNNNNNGG 2 cut(s) 557, 982
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 8 cut(s) 217, 260, 350, 452, 479, 700, 937, 1309
AjnI CCWGG 1 cut(s) 797
AloI GAACNNNNNNTCC 2 cut(s) 1312, 1344
AluBI AGCT 9 cut(s) 157, 425, 460, 682, 850, 944, 970, 1147, 1243
AluI AGCT 9 cut(s) 157, 425, 460, 682, 850, 944, 970, 1147, 1243
AlwI GGATC 5 cut(s) 15, 512, 999, 1268, 1320
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 3 cut(s) 130, 875, 1023
ApeKI GCWGC 2 cut(s) 1155, 1218
ApoI RAATTY 4 cut(s) 94, 196, 692, 923
ArsI GACNNNNNNTTYG 4 cut(s) 759, 791, 1312, 1344
AseI ATTAAT 1 cut(s) 1182
Asp700I GAANNNNTTC 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 5 cut(s) 70, 131, 285, 316, 618
AsuHPI GGTGA 4 cut(s) 373, 399, 732, 997
AsuNHI GCTAGC 1 cut(s) 1147
AvaII GGWCC 4 cut(s) 70, 285, 316, 618
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BanI GGYRCC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 1142, 1205
BccI CCATC 3 cut(s) 296, 600, 1075
BciT130I CCWGG 1 cut(s) 799
BciVI GTATCC 1 cut(s) 1053
BfaI CTAG 5 cut(s) 152, 326, 428, 1148, 1326
BfmI CTRYAG 2 cut(s) 64, 639
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 1053
BisI GCNGC 2 cut(s) 1156, 1219
BlsI GCNGC 2 cut(s) 1157, 1220
Bme1390I CCNGG 1 cut(s) 799
Bme18I GGWCC 4 cut(s) 70, 285, 316, 618
BmgT120I GGNCC 5 cut(s) 70, 131, 285, 316, 618
BmiI GGNNCC 6 cut(s) 30, 71, 72, 286, 620, 1375
BmrFI CCNGG 1 cut(s) 799
BmsI GCATC 4 cut(s) 69, 110, 322, 829
BmtI GCTAGC 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 1217
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 410, 798, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 982
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 3 cut(s) 410, 798, 1026
BseGI GGATG 4 cut(s) 337, 667, 1114, 1213
BseLI CCNNNNNNNGG 2 cut(s) 557, 982
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 39, 128
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 1142, 1205
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 132, 877, 1025
BshNI GGYRCC 1 cut(s) 28
BslFI GGGAC 4 cut(s) 56, 160, 298, 901
BslI CCNNNNNNNGG 2 cut(s) 557, 982
BsmFI GGGAC 4 cut(s) 56, 160, 298, 901
BsmI GAATGC 1 cut(s) 1007
BsnI GGCC 3 cut(s) 132, 877, 1025
Bsp143I GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 2 cut(s) 26, 85
BspANI GGCC 3 cut(s) 132, 877, 1025
BspCNI CTCAG 2 cut(s) 40, 127
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 6 cut(s) 30, 71, 72, 286, 620, 1375
BspMI ACCTGC 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 1151
BspPI GGATC 5 cut(s) 15, 512, 999, 1268, 1320
BspT107I GGYRCC 1 cut(s) 28
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 410, 798, 1026
BssMI GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
BssT1I CCWWGG 2 cut(s) 410, 1026
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 2 cut(s) 447, 578
Bst6I CTCTTC 4 cut(s) 212, 245, 477, 630
BstAFI CTTAAG 1 cut(s) 677
BstC8I GCNNGC 6 cut(s) 337, 504, 602, 892, 1149, 1153
BstDEI CTNAG 2 cut(s) 48, 114
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 4 cut(s) 337, 667, 1114, 1213
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 6 cut(s) 10, 407, 520, 994, 1263, 1315
BstMBI GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
BstMWI GCNNNNNNNGC 3 cut(s) 503, 606, 1249
BstNI CCWGG 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 797
BstSFI CTRYAG 2 cut(s) 64, 639
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 1142, 1205
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
BsuI GTATCC 1 cut(s) 1053
BsuRI GGCC 3 cut(s) 132, 877, 1025
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 4 cut(s) 337, 667, 1114, 1213
BtsI GCAGTG 2 cut(s) 59, 595
BtsIMutI CAGTG 3 cut(s) 39, 59, 595
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 6 cut(s) 337, 504, 602, 892, 1149, 1153
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 562
Cfr13I GGNCC 5 cut(s) 70, 131, 285, 316, 618
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 29, 706
CspCI CAANNNNNGTGG 2 cut(s) 908, 943
CviAII CATG 7 cut(s) 143, 411, 499, 563, 964, 1021, 1280
CviQI GTAC 2 cut(s) 29, 706
DdeI CTNAG 2 cut(s) 48, 114
DpnI GATC 6 cut(s) 9, 406, 519, 993, 1262, 1314
DpnII GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
Eam1104I CTCTTC 4 cut(s) 212, 245, 477, 630
EarI CTCTTC 4 cut(s) 212, 245, 477, 630
Eco130I CCWWGG 2 cut(s) 410, 1026
Eco47I GGWCC 4 cut(s) 70, 285, 316, 618
Eco57I CTGAAG 5 cut(s) 179, 390, 437, 856, 872
EcoO109I RGGNCCY 3 cut(s) 70, 131, 618
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 2 cut(s) 410, 1026
ErhI CCWWGG 2 cut(s) 410, 1026
FaeI CATG 7 cut(s) 146, 414, 502, 566, 967, 1024, 1283
FaqI GGGAC 4 cut(s) 56, 160, 298, 901
FatI CATG 7 cut(s) 142, 410, 498, 562, 963, 1020, 1279
Fnu4HI GCNGC 2 cut(s) 1156, 1219
FokI GGATG 4 cut(s) 344, 654, 1121, 1220
Fsp4HI GCNGC 2 cut(s) 1156, 1219
FspBI CTAG 5 cut(s) 152, 326, 428, 1148, 1326
GluI GCNGC 2 cut(s) 1156, 1219
GsuI CTGGAG 1 cut(s) 1217
HaeIII GGCC 3 cut(s) 132, 877, 1025
HgaI GACGC 1 cut(s) 32
Hin1II CATG 7 cut(s) 146, 414, 502, 566, 967, 1024, 1283
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 3 cut(s) 322, 914, 1049
HpaI GTTAAC 1 cut(s) 1141
HphI GGTGA 4 cut(s) 373, 399, 732, 997
Hpy166II GTNNAC 8 cut(s) 316, 364, 868, 1096, 1114, 1141, 1174, 1303
Hpy188I TCNGA 3 cut(s) 370, 404, 1013
Hpy8I GTNNAC 8 cut(s) 316, 364, 868, 1096, 1114, 1141, 1174, 1303
HpyAV CCTTC 3 cut(s) 154, 847, 982
HpyCH4III ACNGT 2 cut(s) 447, 578
HpyCH4IV ACGT 2 cut(s) 1017, 1276
HpyCH4V TGCA 6 cut(s) 60, 206, 281, 842, 1065, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 606, 1249
HpyF3I CTNAG 2 cut(s) 48, 114
HpySE526I ACGT 2 cut(s) 1017, 1276
Hsp92II CATG 7 cut(s) 146, 414, 502, 566, 967, 1024, 1283
KflI GGGWCCC 1 cut(s) 70
KpnI GGTACC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 1141
Kzo9I GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
LmnI GCTCC 1 cut(s) 1030
Lsp1109I GCAGC 2 cut(s) 1142, 1205
LweI GCATC 4 cut(s) 69, 110, 322, 829
MaeI CTAG 5 cut(s) 152, 326, 428, 1148, 1326
MaeII ACGT 2 cut(s) 1017, 1276
MaeIII GTNAC 1 cut(s) 1235
MalI GATC 6 cut(s) 9, 406, 519, 993, 1262, 1314
MboI GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
MflI RGATCY 1 cut(s) 1312
MluCI AATT 8 cut(s) 94, 196, 385, 692, 923, 931, 977, 1163
MlyI GAGTC 2 cut(s) 923, 1058
MnlI CCTC 6 cut(s) 123, 517, 599, 633, 850, 1099
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 5 cut(s) 678, 882, 1140, 1182, 1380
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 799
Mva1269I GAATGC 1 cut(s) 1007
MvaI CCWGG 1 cut(s) 799
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 503, 606, 1249
NcoI CCATGG 1 cut(s) 410
NdeII GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
NheI GCTAGC 1 cut(s) 1147
NlaIII CATG 7 cut(s) 146, 414, 502, 566, 967, 1024, 1283
NlaIV GGNNCC 6 cut(s) 30, 71, 72, 286, 620, 1375
PagI TCATGA 1 cut(s) 562
PctI GAATGC 1 cut(s) 1007
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 1157, 1220
PleI GAGTC 2 cut(s) 922, 1057
PpsI GAGTC 2 cut(s) 922, 1057
PpuMI RGGWCCY 2 cut(s) 70, 618
PshBI ATTAAT 1 cut(s) 1182
Psp5II RGGWCCY 2 cut(s) 70, 618
Psp6I CCWGG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 6 cut(s) 30, 71, 72, 286, 620, 1375
PspPI GGNCC 5 cut(s) 70, 131, 285, 316, 618
PspPPI RGGWCCY 2 cut(s) 70, 618
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 1312
RsaI GTAC 2 cut(s) 30, 707
RsaNI GTAC 2 cut(s) 29, 706
SaqAI TTAA 5 cut(s) 678, 882, 1140, 1182, 1380
SatI GCNGC 2 cut(s) 1156, 1219
Sau3AI GATC 6 cut(s) 7, 404, 517, 991, 1260, 1312
Sau96I GGNCC 5 cut(s) 70, 131, 285, 316, 618
SchI GAGTC 2 cut(s) 923, 1058
ScrFI CCNGG 1 cut(s) 799
SfaNI GCATC 4 cut(s) 69, 110, 322, 829
SfcI CTRYAG 2 cut(s) 64, 639
SinI GGWCC 4 cut(s) 70, 285, 316, 618
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 8 cut(s) 94, 196, 385, 692, 923, 931, 977, 1163
SsiI CCGC 2 cut(s) 26, 85
SspI AATATT 1 cut(s) 1070
SspMI CTAG 5 cut(s) 152, 326, 428, 1148, 1326
StyD4I CCNGG 1 cut(s) 797
StyI CCWWGG 2 cut(s) 410, 1026
TaaI ACNGT 2 cut(s) 447, 578
TaiI ACGT 2 cut(s) 1020, 1279
TaqI TCGA 1 cut(s) 1331
TaqII GACCGA 1 cut(s) 548
TasI AATT 8 cut(s) 94, 196, 385, 692, 923, 931, 977, 1163
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 5 cut(s) 678, 882, 1140, 1182, 1380
Tru9I TTAA 5 cut(s) 678, 882, 1140, 1182, 1380
TscAI CASTG 3 cut(s) 39, 59, 602
TseI GCWGC 2 cut(s) 1155, 1218
TspDTI ATGAA 8 cut(s) 128, 232, 243, 331, 543, 579, 656, 980
TspGWI ACGGA 2 cut(s) 182, 602
TspRI CASTG 3 cut(s) 39, 59, 602
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 4 cut(s) 70, 285, 316, 618
VspI ATTAAT 1 cut(s) 1182
XapI RAATTY 4 cut(s) 94, 196, 692, 923
XbaI TCTAGA 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 5 cut(s) 152, 326, 428, 1148, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.