Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

18085645 .. 18086877

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGGCTTCACAAATGGCGAAGAAAACTGATCAAAGTGAAAAAAAACGCAATGACCCTGTTAAGTTCTCGAAGCACTGGTGTATCTACCGGATTCCTAGCAAACTCCGGAATGTAAAAGATGAAGCTTACACTCCCCAATTGATTTCAATAGGCCCCTTCCACCATGGCAATCCGAAACTGGCGGACATGGAAAGCCATAAAAAGAAATATTATGAGAATTTCTGCCAGCGAACTTCGAGGAAAAAAGAGGAACTAGAAACTTTCATCCGTGAGAAAGAAGATGACATTCTTCGTTGTTATGCAGGGTCCATTGAGCCTGATATTGACTTTGTGAAGGTAATTCTAATTGATGCCTGCTTCATCCTTGAGCTCTTTCTGAGGAACTGTCAAACCGAAAAGCATGAAAATTATTACATTCTAAGATCGCCATTGCTGAGGAAAGCTGTCGAGCAGGACCTGATACTCTTTGAAAATCAGCTTCCTTATCCTCTTCTTCAAGGGCTATATGACTTTGCCAACCCCACCTATTCCAGTTCCAATCCCCGAAAAAATGTTCAGGAGAAAGAAGAGGCGGATGACCTGCAGCATTGCTTGCCTTGCTTCCAGCCATGTTTTCCATTTTCCGACGCGACCCCTTCTAGATTGAGAAAACCGAAAAGTATATACGACGTAAGAAAGCTGAAGGAAGCAGGGGTGAAGTTTAGGCCAAATGAAGGTAGTGAACGCTTCGTCATAAAAAGAGGTGAGGACCACAAATGTAATTTCAAAATGGCATGTTTTAGAAATATGAACTTGAAGCTTACAAAATTTTGGGCAAGGTATGAGGTAGAATGCGTCATTCGAAACGTGATGGCCTTGGAGCAGTTTTTGTACCCAAAGAAGGCTTATGTTTGCAGTTACTTTTTGATGCTGGATCAGCTTGTGGATACTGTGGAAGATGTGAATGCGCTGATTGAAAGCGAAGTTATAGTTAACTTGCTAGGCAGCAGCAACGCAGTTGCGAAGCTGATTAATTCACTTTGTGAGCAGACTATGGATGATAGATCCTGCTATGAAGATATCTGTAAACAGCTTAACGAGCACTACAAGATCAGCTTCTGCAACCGTAACATTTCGATCCTGAAACGAGTTTACTTCAAGGATCTTTGGACGGGCAGTTCAACTATAGTTGGACTCTTTGTGCTGTTTTTCTCCATCATTGGAACCATTAAGTCTCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

409

Amino Acids

47.82

Weight (kDa)

8.54

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	591
AccII	CGCG	1 cut(s)	632
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	2 cut(s)	185, 575
AclWI	GGATC	4 cut(s)	924, 1041, 1114, 1152
AcsI	RAATTY	2 cut(s)	220, 809
AcuI	CTGAAG	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	1025
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	2 cut(s)	716, 883
AgsI	TTSAA	8 cut(s)	150, 473, 500, 769, 799, 959, 1141, 1164
AloI	GAACNNNNNNTCC	2 cut(s)	1144, 1176
Alw21I	GWGCWC	2 cut(s)	375, 1086
Alw26I	GTCTC	1 cut(s)	1221
AlwI	GGATC	4 cut(s)	924, 1041, 1114, 1152
AlwNI	CAGNNNCTG	2 cut(s)	460, 1101
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	3 cut(s)	154, 707, 855
ApeKI	GCWGC	3 cut(s)	586, 987, 990
ApoI	RAATTY	2 cut(s)	220, 809
AseI	ATTAAT	1 cut(s)	1014
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	4 cut(s)	155, 309, 457, 751
AsuHPI	GGTGA	2 cut(s)	709, 758
AsuII	TTCGAA	1 cut(s)	844
AvaII	GGWCC	3 cut(s)	309, 457, 751
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	375, 1086
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	598, 999, 1002
BccI	CCATC	2 cut(s)	847, 1205
BciVI	GTATCC	1 cut(s)	922
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	1221
BfaI	CTAG	4 cut(s)	99, 257, 642, 983
BfmI	CTRYAG	2 cut(s)	584, 1167
BfuAI	ACCTGC	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	922
BisI	GCNGC	3 cut(s)	587, 988, 991
BlsI	GCNGC	3 cut(s)	588, 989, 992
Bme18I	GGWCC	3 cut(s)	309, 457, 751
BmgT120I	GGNCC	4 cut(s)	155, 309, 457, 751
BmiI	GGNNCC	3 cut(s)	157, 310, 1207
BmsI	GCATC	2 cut(s)	343, 900
Bpu10I	CCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	166, 858
BsaWI	WCCGGW	2 cut(s)	90, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	716, 883
Bse1I	ACTGG	3 cut(s)	83, 186, 534
Bse3DI	GCAATG	3 cut(s)	58, 431, 589
BseAI	TCCGGA	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	166, 858
BseGI	GGATG	4 cut(s)	267, 363, 583, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	716, 883
BseMI	GCAATG	3 cut(s)	58, 431, 589
BseMII	CTCAG	2 cut(s)	371, 428
BseNI	ACTGG	3 cut(s)	83, 186, 534
BseXI	GCAGC	3 cut(s)	598, 999, 1002
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	3 cut(s)	156, 709, 857
BsiHKAI	GWGCWC	2 cut(s)	375, 1086
BsiSI	CCGG	2 cut(s)	91, 109
BslI	CCNNNNNNNGG	2 cut(s)	716, 883
BsmAI	GTCTC	1 cut(s)	1221
BsmI	GAATGC	2 cut(s)	839, 952
BsnI	GGCC	3 cut(s)	156, 709, 857
Bsp119I	TTCGAA	1 cut(s)	844
Bsp1286I	GDGCHC	2 cut(s)	375, 1086
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	185, 575
BspANI	GGCC	3 cut(s)	156, 709, 857
BspCNI	CTCAG	2 cut(s)	372, 429
BspEI	TCCGGA	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	3 cut(s)	157, 310, 1207
BspMAI	CTGCAG	1 cut(s)	588
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	924, 1041, 1114, 1152
BspT104I	TTCGAA	1 cut(s)	844
BsrDI	GCAATG	3 cut(s)	58, 431, 589
BsrI	ACTGG	3 cut(s)	83, 186, 534
BssECI	CCNNGG	2 cut(s)	166, 858
BssMI	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
BssT1I	CCWWGG	2 cut(s)	166, 858
Bst4CI	ACNGT	3 cut(s)	389, 934, 1109
Bst6I	CTCTTC	2 cut(s)	498, 564
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	230, 358, 596
BstDEI	CTNAG	3 cut(s)	380, 422, 437
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	4 cut(s)	267, 363, 583, 1045
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	7 cut(s)	34, 428, 919, 1049, 1095, 1122, 1147
BstMAI	GTCTC	1 cut(s)	1221
BstMBI	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
BstMWI	GCNNNNNNNGC	4 cut(s)	595, 600, 919, 1081
BstNSI	RCATGY	1 cut(s)	780
BstSFI	CTRYAG	2 cut(s)	584, 1167
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	3 cut(s)	598, 999, 1002
BstX2I	RGATCY	2 cut(s)	1046, 1144
BstYI	RGATCY	2 cut(s)	1046, 1144
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	156, 709, 857
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	267, 363, 583, 1045
BtsIMutI	CAGTG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	230, 358, 596
CaiI	CAGNNNCTG	2 cut(s)	460, 1101
CfoI	GCGC	1 cut(s)	952
Cfr13I	GGNCC	4 cut(s)	155, 309, 457, 751
CseI	GACGC	2 cut(s)	638, 826
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	6 cut(s)	167, 190, 404, 612, 777, 1222
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	3 cut(s)	380, 422, 437
DpnI	GATC	7 cut(s)	33, 427, 918, 1048, 1094, 1121, 1146
DpnII	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
DraIII	CACNNNGTG	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	498, 564
EarI	CTCTTC	2 cut(s)	498, 564
EciI	GGCGGA	2 cut(s)	200, 590
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	166, 858
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	1063
Eco47I	GGWCC	3 cut(s)	309, 457, 751
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	2 cut(s)	155, 457
EcoRV	GATATC	1 cut(s)	1063
EcoT14I	CCWWGG	2 cut(s)	166, 858
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	166, 858
FaeI	CATG	6 cut(s)	170, 193, 407, 615, 780, 1225
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FatI	CATG	6 cut(s)	166, 189, 403, 611, 776, 1221
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	587, 988, 991
FokI	GGATG	4 cut(s)	254, 350, 590, 1052
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	587, 988, 991
FspBI	CTAG	4 cut(s)	99, 257, 642, 983
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	3 cut(s)	587, 988, 991
HaeIII	GGCC	3 cut(s)	156, 709, 857
HapII	CCGG	2 cut(s)	91, 109
HgaI	GACGC	2 cut(s)	638, 826
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	6 cut(s)	170, 193, 407, 615, 780, 1225
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HindIII	AAGCTT	2 cut(s)	126, 800
HinfI	GANTC	2 cut(s)	94, 1176
HpaI	GTTAAC	1 cut(s)	976
HpaII	CCGG	2 cut(s)	91, 109
HphI	GGTGA	2 cut(s)	709, 758
Hpy166II	GTNNAC	4 cut(s)	725, 976, 1070, 1135
Hpy188I	TCNGA	3 cut(s)	177, 381, 628
Hpy188III	TCNNGA	5 cut(s)	70, 109, 560, 642, 1123
Hpy8I	GTNNAC	4 cut(s)	725, 976, 1070, 1135
Hpy99I	CGWCG	2 cut(s)	632, 674
HpyAV	CCTTC	6 cut(s)	169, 331, 648, 679, 710, 877
HpyCH4III	ACNGT	3 cut(s)	389, 934, 1109
HpyCH4IV	ACGT	2 cut(s)	672, 849
HpyCH4V	TGCA	4 cut(s)	305, 586, 897, 1104
HpyF10VI	GCNNNNNNNGC	4 cut(s)	595, 600, 919, 1081
HpyF3I	CTNAG	3 cut(s)	380, 422, 437
HpySE526I	ACGT	2 cut(s)	672, 849
Hsp92II	CATG	6 cut(s)	170, 193, 407, 615, 780, 1225
HspAI	GCGC	1 cut(s)	950
Kpn2I	TCCGGA	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	976
Kzo9I	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	3 cut(s)	598, 999, 1002
LweI	GCATC	2 cut(s)	343, 900
MaeI	CTAG	4 cut(s)	99, 257, 642, 983
MaeII	ACGT	2 cut(s)	672, 849
MaeIII	GTNAC	2 cut(s)	899, 1109
MalI	GATC	7 cut(s)	33, 427, 918, 1048, 1094, 1121, 1146
MboI	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
MboII	GAAGA	8 cut(s)	34, 284, 293, 485, 488, 581, 950, 1070
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	2 cut(s)	1046, 1144
MhlI	GDGCHC	2 cut(s)	375, 1086
MluCI	AATT	8 cut(s)	140, 220, 342, 348, 409, 763, 809, 1015
MlyI	GAGTC	1 cut(s)	1170
MmeI	TCCRAC	2 cut(s)	651, 1153
MnlI	CCTC	9 cut(s)	234, 244, 375, 432, 501, 565, 737, 742, 820
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	5 cut(s)	63, 975, 1014, 1077, 1212
MspI	CCGG	2 cut(s)	91, 109
MunI	CAATTG	1 cut(s)	140
Mva1269I	GAATGC	2 cut(s)	839, 952
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	4 cut(s)	595, 600, 919, 1081
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
NlaIII	CATG	6 cut(s)	170, 193, 407, 615, 780, 1225
NlaIV	GGNNCC	3 cut(s)	157, 310, 1207
NspI	RCATGY	1 cut(s)	780
NspV	TTCGAA	1 cut(s)	844
PctI	GAATGC	2 cut(s)	839, 952
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	588, 989, 992
PleI	GAGTC	1 cut(s)	1170
PpsI	GAGTC	1 cut(s)	1170
PpuMI	RGGWCCY	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	457
PspN4I	GGNNCC	3 cut(s)	157, 310, 1207
PspPI	GGNCC	4 cut(s)	155, 309, 457, 751
PspPPI	RGGWCCY	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	588
PstNI	CAGNNNCTG	2 cut(s)	460, 1101
PsuI	RGATCY	2 cut(s)	1046, 1144
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	63, 975, 1014, 1077, 1212
SatI	GCNGC	3 cut(s)	587, 988, 991
Sau3AI	GATC	7 cut(s)	31, 425, 916, 1046, 1092, 1119, 1144
Sau96I	GGNCC	4 cut(s)	155, 309, 457, 751
SchI	GAGTC	1 cut(s)	1170
SduI	GDGCHC	2 cut(s)	375, 1086
SfaNI	GCATC	2 cut(s)	343, 900
SfcI	CTRYAG	2 cut(s)	584, 1167
SfuI	TTCGAA	1 cut(s)	844
SinI	GGWCC	3 cut(s)	309, 457, 751
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	8 cut(s)	140, 220, 342, 348, 409, 763, 809, 1015
SsiI	CCGC	2 cut(s)	185, 575
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	4 cut(s)	99, 257, 642, 983
SstI	GAGCTC	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	166, 858
TaaI	ACNGT	3 cut(s)	389, 934, 1109
TaiI	ACGT	2 cut(s)	675, 852
TaqI	TCGA	5 cut(s)	71, 239, 450, 844, 1118
TasI	AATT	8 cut(s)	140, 220, 342, 348, 409, 763, 809, 1015
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	5 cut(s)	63, 975, 1014, 1077, 1212
Tru9I	TTAA	5 cut(s)	63, 975, 1014, 1077, 1212
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	3 cut(s)	586, 987, 990
TspDTI	ATGAA	7 cut(s)	138, 256, 352, 420, 729, 806, 1071
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	309, 457, 751
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	2 cut(s)	220, 809
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	780
XspI	CTAG	4 cut(s)	99, 257, 642, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.