Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

18059430 .. 18060659

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G124600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGAACCATAAAAGAATATATTGTGAGAATTTTTTCACAGGTACTTTAAAGAGTAAGGAGGAACTAAAAAGTTTCATCAGAGATCGTCAAGGAAAGATTCTTAGTTGTTATGCAGGGACAATTAATCAGGGTGACAATTTTGACTTTTCGGAGGTAATTCTAGTTGATGCCCTCTTCATCATTCAGCTCTTTATGATGGATTCTGAAAACCCTAAAAATGATTATCACATCTTAAGATCACGGTGGCTGAGGAAAGCTGTAGAGCAGGACCTCGTACTGCTAGAAAATCAGCTTCCTTATTTTCTTCTTCAAGACCTGTACAACTTTGCCATGCCAGTCTCTTGTTTCTATCCCCGCAACGAAGTGCAAGCACAAGAACGGGAGAATAGACAACAAAGATGTTTTGATCTTGATAAAATATGTTACTGCTTGCCTTGCTGTCGTAGAAGCCACCACCGCGATCATTCTGTGTTAACTGTTGAAGCCGCCAAATCTGTTCATCCCTTTCTCAAGCTTACCTGTGAGTTCTTCAAAAGTTACAGTAAGGGAAAATCTGTCAGGATTGGAGTAACTATAAAACATTTCACTGATTTGGTAAGACATTTTTTGTGCCCTGCAGAAGAAATGACTTGGGTAGATACTCCTATAAAAAATATATATGACACGAGAAAGTTGAAGGCCGTAGGGGTGAACTTTAGGCTACTTCAAGAAGTAGGTTTTGTCATTAAAGGAGATGAATCCCACGATTGTAATTTCAACTTAGCATGTTTTACAAGTATGGACTTGAAGCTGACACTAATCTGTGTCAAGGATGAGATAGAATGCGTCGTCCGAAATGTCATGGCGTTGGAGCAGTTTCTGTATCCAGACTCTGCTTATATTTGCGAATATTTTTTGTTCATGGATAAACTTGTGGACACTGTTGAAGATGTGAATTTGCTGATTGAGAGTGGAGTTCTTGTTAACAAGATAGGCTGCAACGAAACCGTGGCAAACCTGATCAATAAACTCTGTGTGCAGATTATGGATGATGTATCCTGCTATGGTGGTGTCTCTGGGCAGCTTAATAAGCACTATGGGATCAGTTTTTGGAACCGTCATGTGGCAATCCTGAAAGGAGTTTACTTGAAGGATCTTTGGAGAGGCAGCTCAACTATACTTGGACTTTTTGTCCTGGTTTTCTCAATCATTGGAACCATGAAGTCGCTTGAACATAATCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

410

Amino Acids

47.36

Weight (kDa)

6.47

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	462
AciI	CCGC	3 cut(s)	358, 460, 489
AclWI	GGATC	2 cut(s)	1091, 1143
AcsI	RAATTY	2 cut(s)	31, 937
AfaI	GTAC	3 cut(s)	46, 279, 323
AfiI	CCNNNNNNNGG	1 cut(s)	1105
AflII	CTTAAG	1 cut(s)	235
AhdI	GACNNNNNGTC	1 cut(s)	1172
AjnI	CCWGG	1 cut(s)	1176
AluBI	AGCT	7 cut(s)	190, 260, 295, 517, 793, 1066, 1152
AluI	AGCT	7 cut(s)	190, 260, 295, 517, 793, 1066, 1152
Alw26I	GTCTC	2 cut(s)	346, 1060
AlwI	GGATC	2 cut(s)	1091, 1143
AlwNI	CAGNNNCTG	2 cut(s)	862, 875
AoxI	GGCC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	978, 1063, 1149
ApoI	RAATTY	2 cut(s)	31, 937
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	146, 703
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	617
BauI	CACGAG	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	965, 1075, 1161
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	1 cut(s)	1178
BciVI	GTATCC	2 cut(s)	876, 1048
BclI	TGATCA	1 cut(s)	1002
BcoDI	GTCTC	2 cut(s)	346, 1060
BfaI	CTAG	2 cut(s)	164, 284
BfmI	CTRYAG	2 cut(s)	261, 618
BfrI	CTTAAG	1 cut(s)	235
BfuI	GTATCC	2 cut(s)	876, 1048
BisI	GCNGC	4 cut(s)	489, 979, 1064, 1150
BlsI	GCNGC	4 cut(s)	490, 980, 1065, 1151
Bme1390I	CCNGG	1 cut(s)	1178
Bme18I	GGWCC	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	1172
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	1097, 1198
BmrFI	CCNGG	1 cut(s)	1178
BmsI	GCATC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	990
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	1105
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	1178
BseDI	CCNNGG	1 cut(s)	990
BseGI	GGATG	3 cut(s)	502, 820, 1036
BseLI	CCNNNNNNNGG	1 cut(s)	1105
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	3 cut(s)	965, 1075, 1161
BsgI	GTGCAG	1 cut(s)	1040
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	1105
BsmAI	GTCTC	2 cut(s)	346, 1060
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
BspACI	CCGC	3 cut(s)	358, 460, 489
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	1097, 1198
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	2 cut(s)	1091, 1143
BspTI	CTTAAG	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	990
BssMI	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
BssSI	CACGAG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	1178
Bst4CI	ACNGT	6 cut(s)	246, 481, 545, 925, 991, 1100
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	372, 434
BstDEI	CTNAG	3 cut(s)	104, 251, 763
BstDSI	CCRYGG	1 cut(s)	990
BstF5I	GGATG	3 cut(s)	502, 820, 1036
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	7 cut(s)	88, 242, 412, 466, 1005, 1086, 1138
BstMAI	GTCTC	2 cut(s)	346, 1060
BstMBI	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	438, 459, 1072
BstNI	CCWGG	1 cut(s)	1178
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	1176
BstSFI	CTRYAG	2 cut(s)	261, 618
BstSLI	GKGCMC	1 cut(s)	617
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	965, 1075, 1161
BstX2I	RGATCY	1 cut(s)	1135
BstYI	RGATCY	1 cut(s)	1135
BsuI	GTATCC	2 cut(s)	876, 1048
BsuRI	GGCC	1 cut(s)	683
BtgI	CCRYGG	1 cut(s)	990
BtsCI	GGATG	3 cut(s)	502, 820, 1036
BtsIMutI	CAGTG	2 cut(s)	588, 921
Cac8I	GCNNGC	2 cut(s)	372, 434
CaiI	CAGNNNCTG	2 cut(s)	862, 875
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	3 cut(s)	45, 278, 322
CviAII	CATG	6 cut(s)	334, 768, 844, 904, 1103, 1201
CviQI	GTAC	3 cut(s)	45, 278, 322
DdeI	CTNAG	3 cut(s)	104, 251, 763
DpnI	GATC	7 cut(s)	87, 241, 411, 465, 1004, 1085, 1137
DpnII	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
DraI	TTTAAA	1 cut(s)	51
DriI	GACNNNNNGTC	1 cut(s)	1172
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	1172
EarI	CTCTTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	1176
FaeI	CATG	6 cut(s)	337, 771, 847, 907, 1106, 1204
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	6 cut(s)	333, 767, 843, 903, 1102, 1200
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	489, 979, 1064, 1150
FokI	GGATG	3 cut(s)	489, 827, 1043
Fsp4HI	GCNGC	4 cut(s)	489, 979, 1064, 1150
FspBI	CTAG	2 cut(s)	164, 284
GluI	GCNGC	4 cut(s)	489, 979, 1064, 1150
HaeIII	GGCC	1 cut(s)	683
HgaI	GACGC	1 cut(s)	817
Hin1II	CATG	6 cut(s)	337, 771, 847, 907, 1106, 1204
HincII	GTYRAC	2 cut(s)	477, 967
HindII	GTYRAC	2 cut(s)	477, 967
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	100, 203, 740, 872
HpaI	GTTAAC	2 cut(s)	477, 967
HphI	GGTGA	2 cut(s)	146, 703
Hpy166II	GTNNAC	5 cut(s)	477, 694, 919, 967, 1126
Hpy188I	TCNGA	4 cut(s)	83, 154, 208, 836
Hpy188III	TCNNGA	6 cut(s)	314, 413, 562, 710, 869, 1114
Hpy8I	GTNNAC	5 cut(s)	477, 694, 919, 967, 1126
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	2 cut(s)	673, 1126
HpyCH4III	ACNGT	6 cut(s)	246, 481, 545, 925, 991, 1100
HpyCH4V	TGCA	5 cut(s)	116, 370, 620, 981, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	438, 459, 1072
HpyF3I	CTNAG	3 cut(s)	104, 251, 763
Hsp92II	CATG	6 cut(s)	337, 771, 847, 907, 1106, 1204
Ksp22I	TGATCA	1 cut(s)	1002
KspAI	GTTAAC	2 cut(s)	477, 967
Kzo9I	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	965, 1075, 1161
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	164, 284
MaeIII	GTNAC	4 cut(s)	134, 425, 539, 571
MalI	GATC	7 cut(s)	87, 241, 411, 465, 1004, 1085, 1137
MboI	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
MboII	GAAGA	6 cut(s)	169, 299, 302, 523, 635, 941
MflI	RGATCY	1 cut(s)	1135
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	7 cut(s)	31, 123, 139, 159, 754, 937, 1224
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	6 cut(s)	55, 148, 185, 246, 284, 1139
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	8 cut(s)	50, 126, 236, 476, 729, 966, 1068, 1228
MspCI	CTTAAG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	1178
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	1178
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	438, 459, 1072
NdeII	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
NlaIII	CATG	6 cut(s)	337, 771, 847, 907, 1106, 1204
NlaIV	GGNNCC	2 cut(s)	1097, 1198
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	771
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	100, 203, 740
PkrI	GCNGC	4 cut(s)	490, 980, 1065, 1151
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	1176
PspGI	CCWGG	1 cut(s)	1176
PspN4I	GGNNCC	2 cut(s)	1097, 1198
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	2 cut(s)	862, 875
PsuI	RGATCY	1 cut(s)	1135
RsaI	GTAC	3 cut(s)	46, 279, 323
RsaNI	GTAC	3 cut(s)	45, 278, 322
SaqAI	TTAA	8 cut(s)	50, 126, 236, 476, 729, 966, 1068, 1228
SatI	GCNGC	4 cut(s)	489, 979, 1064, 1150
Sau3AI	GATC	7 cut(s)	85, 239, 409, 463, 1002, 1083, 1135
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	1 cut(s)	1178
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	261, 618
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	235, 512
SmoI	CTYRAG	2 cut(s)	235, 512
Sse9I	AATT	7 cut(s)	31, 123, 139, 159, 754, 937, 1224
SsiI	CCGC	3 cut(s)	358, 460, 489
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	2 cut(s)	164, 284
StyD4I	CCNGG	1 cut(s)	1176
TaaI	ACNGT	6 cut(s)	246, 481, 545, 925, 991, 1100
TasI	AATT	7 cut(s)	31, 123, 139, 159, 754, 937, 1224
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	3 cut(s)	100, 203, 740
Tru1I	TTAA	8 cut(s)	50, 126, 236, 476, 729, 966, 1068, 1228
Tru9I	TTAA	8 cut(s)	50, 126, 236, 476, 729, 966, 1068, 1228
TscAI	CASTG	2 cut(s)	595, 928
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	3 cut(s)	978, 1063, 1149
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	6 cut(s)	67, 169, 491, 753, 892, 1217
TspRI	CASTG	2 cut(s)	595, 928
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	31, 937
XceI	RCATGY	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	164, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.