Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

25037226 .. 25038114

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCATTCGGGTTTTGCCAAAAGAACGAAACCCAGAATTGGTTTCCAAGAAGGGATTGAAAAATTGGGTTCTGAAACCCAAAACTGGGCAAATCGCAGAAATGGATATCGGGTCGTCTCGAAATTCTGGTTTTTAAATGGAGATGGTCGGATTACTGGTAGCGAAGGCGCGAAGTTCTTCGCCATGTCCAAGCTTCTAGACCCGAACTCAAGCAGAAAGTCCCAAAGGCCTAGCCGCTTCAGGAGCTCCTCATGGCGCTGCAAATTACAGATTTTTAGCGGGCACAAAGGGAATTGGGTTCAGGGTTTGTCTGAGGATTTCAAGTTTGTGTTGAGCAGCTTTTGGATTCCTCTTTCGACCTCTGCGGGAGAAGGTTATGAGGTACCTGAACGAGAAGAGTACCCATCTTCGCTGGAGAAAAGGGTCAGAGATGGAGACGAAACGAGAAAAGTTGAAGGCAAAAAGGAAGAGTGGAAGACTTCTCTATTTGGAATCGAGATTTGGATCCACCCTCACGGAGGATCTAAGAAAGAAGAACTGGCGGGAAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

184

Amino Acids

21.09

Weight (kDa)

9.79

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	382
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	235, 279, 365, 542
AclWI	GGATC	3 cut(s)	499, 512, 529
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	2 cut(s)	384, 401
AfiI	CCNNNNNNNGG	4 cut(s)	38, 84, 85, 518
AgsI	TTSAA	3 cut(s)	59, 322, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	3 cut(s)	193, 246, 339
AluI	AGCT	3 cut(s)	193, 246, 339
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	121, 429
AlwI	GGATC	3 cut(s)	499, 512, 529
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	258, 336
ApoI	RAATTY	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	382
AspLEI	GCGC	2 cut(s)	170, 258
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	245, 348
BccI	CCATC	3 cut(s)	137, 412, 425
BcoDI	GTCTC	2 cut(s)	121, 429
BfaI	CTAG	2 cut(s)	197, 231
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	3 cut(s)	235, 259, 337
BlsI	GCNGC	3 cut(s)	236, 260, 338
BmiI	GGNNCC	2 cut(s)	384, 506
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 84, 85, 518
Bse1I	ACTGG	3 cut(s)	89, 160, 543
Bse8I	GATNNNNATC	1 cut(s)	503
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	38, 84, 85, 518
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	89, 160, 543
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	245, 348
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	4 cut(s)	38, 84, 85, 518
BsmAI	GTCTC	2 cut(s)	121, 429
BsmBI	CGTCTC	2 cut(s)	121, 429
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	248, 285
Bsp143I	GATC	2 cut(s)	504, 521
BspACI	CCGC	4 cut(s)	235, 279, 365, 542
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	384, 506
BspPI	GGATC	3 cut(s)	499, 512, 529
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	89, 160, 543
BssMI	GATC	2 cut(s)	504, 521
Bst6I	CTCTTC	2 cut(s)	390, 462
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	312, 525
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	170, 258
BstKTI	GATC	2 cut(s)	507, 524
BstMAI	GTCTC	2 cut(s)	121, 429
BstMBI	GATC	2 cut(s)	504, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	245, 348
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	504, 521
BstYI	RGATCY	2 cut(s)	504, 521
BsuRI	GGCC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	2 cut(s)	170, 258
Csp6I	GTAC	2 cut(s)	383, 400
CviAII	CATG	2 cut(s)	184, 252
CviJI	RGCY	5 cut(s)	193, 229, 234, 246, 339
CviKI_1	RGCY	5 cut(s)	193, 229, 234, 246, 339
CviQI	GTAC	2 cut(s)	383, 400
DdeI	CTNAG	2 cut(s)	312, 525
DpnI	GATC	2 cut(s)	506, 523
DpnII	GATC	2 cut(s)	504, 521
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	390, 462
EarI	CTCTTC	2 cut(s)	390, 462
Ecl136II	GAGCTC	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRV	GATATC	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	248
Esp3I	CGTCTC	2 cut(s)	121, 429
FaeI	CATG	2 cut(s)	187, 255
FaiI	YATR	4 cut(s)	185, 253, 378, 553
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	183, 251
FauI	CCCGC	3 cut(s)	272, 358, 535
Fnu4HI	GCNGC	3 cut(s)	235, 259, 337
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	235, 259, 337
FspBI	CTAG	2 cut(s)	197, 231
GlaI	GCGC	2 cut(s)	169, 257
GluI	GCNGC	3 cut(s)	235, 259, 337
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	170, 258
Hin1II	CATG	2 cut(s)	187, 255
Hin6I	GCGC	2 cut(s)	168, 256
HinP1I	GCGC	2 cut(s)	168, 256
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	346, 492
Hpy188I	TCNGA	4 cut(s)	73, 150, 313, 428
Hpy188III	TCNNGA	4 cut(s)	118, 197, 241, 496
HpyAV	CCTTC	4 cut(s)	44, 158, 365, 449
HpyCH4V	TGCA	2 cut(s)	4, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	312, 525
Hsp92II	CATG	2 cut(s)	187, 255
HspAI	GCGC	2 cut(s)	168, 256
KpnI	GGTACC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	504, 521
LmnI	GCTCC	2 cut(s)	243, 251
LpnPI	CCDG	9 cut(s)	46, 70, 112, 141, 226, 287, 398, 399, 524
Lsp1109I	GCAGC	2 cut(s)	245, 348
MaeI	CTAG	2 cut(s)	197, 231
MalI	GATC	2 cut(s)	506, 523
MboI	GATC	2 cut(s)	504, 521
MboII	GAAGA	6 cut(s)	169, 399, 407, 479, 487, 545
MflI	RGATCY	2 cut(s)	504, 521
MhlI	GDGCHC	2 cut(s)	248, 285
MluCI	AATT	5 cut(s)	36, 62, 122, 263, 292
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	259, 307, 360, 370, 373, 512, 522
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	2 cut(s)	504, 521
NlaIII	CATG	2 cut(s)	187, 255
NlaIV	GGNNCC	2 cut(s)	384, 506
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	346, 492
PkrI	GCNGC	3 cut(s)	236, 260, 338
Psp124BI	GAGCTC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	384, 506
PsuI	RGATCY	2 cut(s)	504, 521
RsaI	GTAC	2 cut(s)	384, 401
RsaNI	GTAC	2 cut(s)	383, 400
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	235, 259, 337
Sau3AI	GATC	2 cut(s)	504, 521
SduI	GDGCHC	2 cut(s)	248, 285
SetI	ASST	7 cut(s)	195, 248, 341, 362, 376, 384, 388
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	5 cut(s)	36, 62, 122, 263, 292
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	4 cut(s)	235, 279, 365, 542
SspMI	CTAG	2 cut(s)	197, 231
SstI	GAGCTC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	119, 356, 495
TasI	AATT	5 cut(s)	36, 62, 122, 263, 292
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	346, 492
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	2 cut(s)	258, 336
TspGWI	ACGGA	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	197, 231
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.