RLG00000028788

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000821
Physical Location & Seq
Reverse (-)
28033763 .. 28038037
4275 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028788

Sequence Viewer

Length: 807 bp
ATGAAGGGAGCGAGCTTTGATCTGTCCAAGAAGCTGCAGAGTGGGAAGAGGTTGAAGAGCTCGGGTGTTGAGAACTTGAGATCAAGTGAAAGCCGATCACTTGGCTCATTCTTTTCCATCATGCCCCAAACTTCTGGTGCCGGACAATCTGGGTCCAACCAGTCTGCTGCTTCTGATTCTGAACAAGCTGAGCCATCCTCTGCTTGCAACGAAATCGTTATTGCAAGCAACAACCCGGAAGCAAGCAAGCCGAGAAGCACTGCTCCTAACATGAAAAGGAGGACAGAGACAAGGCTGACAATGTTGGTGGATCTGCAGAAGCACCAAGTCTTGTTTTACAAGTATGGACATGAAGCTCACCCAATTTCGGGTGAAGGATCAAATCGAATGCGTTATCAGAAACGTCATGGCCTTGGAGCAGTTTTGTATCCAGAGTCGGCTTATATTTGCAAATATTTTGTGCTGATGGATAAACTTGTGGACAATGTGAAGGATGTGAACTTGCTGATTGAGAGTGGAGTGATTGTTAACAAGCTAGTAGGCTGTAATGAATTGGTAGTGAACCTGATTAATACACTTTGTCTGGAGATTATGGATGATAGTTGCTGCTATGTTGGTGTTTCTAACCAGCTCAATAAGCACTACGGGATCAGTTTTTGGAAACGTCATGTGGCTATCCTGAAACGAGTTTACTTCAAGGATCTTTGGACTGCTAGTTCGACTATACTTGGTTTTTTGTCCTGGTTTTCTCAATCATTGGAACCATTAAGTCGCTCGAATGAGGGTCGAATCCGGGGACAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

269

Amino Acids

29.81

Weight (kDa)

9.26

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 144 - 245 3.9e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AclWI GGATC 4 cut(s) 318, 385, 656, 708
AfiI CCNNNNNNNGG 2 cut(s) 367, 368
AgsI TTSAA 2 cut(s) 55, 697
AjnI CCWGG 1 cut(s) 740
AloI GAACNNNNNNTCC 2 cut(s) 700, 732
AluBI AGCT 7 cut(s) 15, 34, 60, 188, 356, 535, 631
AluI AGCT 7 cut(s) 15, 34, 60, 188, 356, 535, 631
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 4 cut(s) 318, 385, 656, 708
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 34, 167, 606
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
AseI ATTAAT 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 2 cut(s) 236, 794
AsuHPI GGTGA 2 cut(s) 350, 383
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 21, 154, 593
BccI CCATC 3 cut(s) 125, 202, 460
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 742
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 2 cut(s) 236, 794
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 536, 714, 805
BfmI CTRYAG 2 cut(s) 35, 314
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 3 cut(s) 35, 168, 607
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 3 cut(s) 36, 169, 608
Bme1390I CCNGG 3 cut(s) 236, 742, 794
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 139, 154, 762
BmrFI CCNGG 3 cut(s) 236, 742, 794
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 1 cut(s) 605
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 236, 794
BsaJI CCNNGG 2 cut(s) 412, 793
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 368
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 2 cut(s) 412, 793
BseGI GGATG 3 cut(s) 194, 499, 601
BseLI CCNNNNNNNGG 2 cut(s) 367, 368
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 3 cut(s) 21, 154, 593
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 3 cut(s) 141, 236, 793
BslI CCNNNNNNNGG 2 cut(s) 367, 368
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
Bsp1720I GCTNAGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 139, 154, 762
BspMAI CTGCAG 2 cut(s) 39, 318
BspPI GGATC 4 cut(s) 318, 385, 656, 708
BspQI GCTCTTC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 412, 793
BssMI GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 742
Bst6I CTCTTC 2 cut(s) 41, 50
BstC8I GCNNGC 5 cut(s) 13, 205, 226, 244, 248
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 194, 499, 601
BstKTI GATC 7 cut(s) 22, 83, 98, 313, 380, 651, 703
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 234, 740, 792
BstSFI CTRYAG 2 cut(s) 35, 314
BstV1I GCAGC 3 cut(s) 21, 154, 593
BstX2I RGATCY 2 cut(s) 310, 700
BstXI CCANNNNNNTGG 1 cut(s) 134
BstYI RGATCY 2 cut(s) 310, 700
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 3 cut(s) 194, 499, 601
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 5 cut(s) 13, 205, 226, 244, 248
Cfr13I GGNCC 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 5 cut(s) 121, 271, 350, 407, 668
DdeI CTNAG 1 cut(s) 189
DpnI GATC 7 cut(s) 21, 82, 97, 312, 379, 650, 702
DpnII GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
Eam1104I CTCTTC 2 cut(s) 41, 50
EarI CTCTTC 2 cut(s) 41, 50
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 740
EcoT14I CCWWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 5 cut(s) 124, 274, 353, 410, 671
FatI CATG 5 cut(s) 120, 270, 349, 406, 667
Fnu4HI GCNGC 3 cut(s) 35, 168, 607
FokI GGATG 3 cut(s) 181, 506, 608
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 35, 168, 607
FspBI CTAG 3 cut(s) 536, 714, 805
GluI GCNGC 3 cut(s) 35, 168, 607
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 1 cut(s) 411
HapII CCGG 3 cut(s) 141, 236, 793
Hin1II CATG 5 cut(s) 124, 274, 353, 410, 671
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 3 cut(s) 176, 434, 789
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 3 cut(s) 141, 236, 793
HphI GGTGA 2 cut(s) 350, 383
Hpy166II GTNNAC 5 cut(s) 481, 499, 529, 562, 691
Hpy188I TCNGA 3 cut(s) 175, 181, 399
Hpy188III TCNNGA 3 cut(s) 431, 584, 679
Hpy8I GTNNAC 5 cut(s) 481, 499, 529, 562, 691
HpyAV CCTTC 2 cut(s) 368, 484
HpyCH4IV ACGT 2 cut(s) 403, 664
HpyCH4V TGCA 5 cut(s) 37, 207, 224, 316, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 2 cut(s) 403, 664
Hsp92II CATG 5 cut(s) 124, 274, 353, 410, 671
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 3 cut(s) 8, 268, 416
Lsp1109I GCAGC 3 cut(s) 21, 154, 593
MaeI CTAG 3 cut(s) 536, 714, 805
MaeII ACGT 2 cut(s) 403, 664
MalI GATC 7 cut(s) 21, 82, 97, 312, 379, 650, 702
MboI GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
MboII GAAGA 2 cut(s) 58, 67
MflI RGATCY 2 cut(s) 310, 700
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 363, 551
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 42, 208, 273, 775
MseI TTAA 3 cut(s) 528, 570, 767
MspI CCGG 3 cut(s) 141, 236, 793
MspR9I CCNGG 3 cut(s) 236, 742, 794
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 2 cut(s) 236, 794
NdeII GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
NlaIII CATG 5 cut(s) 124, 274, 353, 410, 671
NlaIV GGNNCC 3 cut(s) 139, 154, 762
NmeAIII GCCGAG 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 50
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 176, 789
PkrI GCNGC 3 cut(s) 36, 169, 608
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 740
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 3 cut(s) 139, 154, 762
PspPI GGNCC 1 cut(s) 153
PstI CTGCAG 2 cut(s) 39, 318
PsuI RGATCY 2 cut(s) 310, 700
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 528, 570, 767
SatI GCNGC 3 cut(s) 35, 168, 607
Sau3AI GATC 7 cut(s) 19, 80, 95, 310, 377, 648, 700
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 3 cut(s) 236, 742, 794
SduI GDGCHC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 35, 314
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 2 cut(s) 363, 551
SspI AATATT 1 cut(s) 455
SspMI CTAG 3 cut(s) 536, 714, 805
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 234, 740, 792
StyI CCWWGG 1 cut(s) 412
TaiI ACGT 2 cut(s) 406, 667
TaqI TCGA 4 cut(s) 385, 719, 776, 787
TasI AATT 2 cut(s) 363, 551
TfiI GAWTC 2 cut(s) 176, 789
Tru1I TTAA 3 cut(s) 528, 570, 767
Tru9I TTAA 3 cut(s) 528, 570, 767
TscAI CASTG 1 cut(s) 265
TseI GCWGC 3 cut(s) 34, 167, 606
TspDTI ATGAA 4 cut(s) 17, 287, 366, 564
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 153
VspI ATTAAT 1 cut(s) 570
XspI CTAG 3 cut(s) 536, 714, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.