Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006463.1

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

54054 .. 55226

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006463.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggaggatcaagaatacaatgacgcggtaccagtgttctaccaacctgagcagtggtgcacctacagggtcccaaacaaactccgcaatgtaaattcagcatcatatactcctcagttgctttccataggcccttttcatcatgggacactagagctgaaggacacggagaacaacaaaagaatatattgtgagaatttctgtgcaggttctttgaagagtatagatgaactaaaactcttcatcaaaagtcgtcttcaagacattgttggttgttatgcagggaccatcaatcagcaagacagcgaacttgtggacctgattctagtggatgcttgcttcatcattgaactttttttggtgaactctgaagaaacaactgaaaattattatcacttattcagatcaccatggctgaagaaagctctagagcaggatttgatactgtttgaaaatcagcttccttattctcttcttcaagacctatacgattttgccatgcctgcctcttgctttaatcccccaaatgaagtaaaactaccaaaacagccccatatcggtcatgaacagcgatactgtttgtcttgcctccatcactgcttgcgttgcttccgtaggacccctcttcgtgattattctataggggttgccaacgcagaacctgttcatccctttcttaaacttacctgtgaattcttcaaagagtacagcaagggaagatttgtcaggaatggagtatcaccgaaacattttactgatttggtaagacactttctttgtccagaagaagaaatgacctgggtagatgttcgtcttatccctgtcaaaactatatatgatgcaagaaagctgaaggaggcaggggtaaacttcaggccacttaaagaagcaggctttgtcataaaaggagatgagtcccacaaattttgtaatttcaatgtagcttgttttacaagtatggacatgaagttcacccaatttcgggtgaaggatcaaactgaatgcgttatcagaaacgtcatggccttggagcagtttttgtatccagagtcggcttatatttgcaaatatttattgctgatggataaacttgtggacaatgtggaggatgtgaacttgctgattgtgttggggccaatttcggcatcaacgagtcaacagaggttccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

390

Amino Acids

45.43

Weight (kDa)

6.03

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	26, 85
AclWI	GGATC	2 cut(s)	15, 999
AcsI	RAATTY	4 cut(s)	94, 196, 692, 923
AcuI	CTGAAG	5 cut(s)	179, 390, 437, 856, 872
AfaI	GTAC	2 cut(s)	30, 707
AfiI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
AgsI	TTSAA	7 cut(s)	217, 260, 350, 452, 479, 700, 937
AjnI	CCWGG	1 cut(s)	797
AloI	GAACNNNNNNTCC	2 cut(s)	953, 985
AluBI	AGCT	5 cut(s)	157, 425, 460, 850, 944
AluI	AGCT	5 cut(s)	157, 425, 460, 850, 944
Alw21I	GWGCWC	1 cut(s)	62
Alw44I	GTGCAC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	15, 999
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	130, 875, 1023, 1133
ApaLI	GTGCAC	1 cut(s)	58
ApoI	RAATTY	4 cut(s)	94, 196, 692, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	759, 791
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	6 cut(s)	70, 131, 285, 316, 618, 1133
AsuHPI	GGTGA	5 cut(s)	373, 399, 732, 964, 997
AvaII	GGWCC	4 cut(s)	70, 285, 316, 618
BaeGI	GKGCMC	1 cut(s)	62
BaeI	ACNNNNGTAYC	2 cut(s)	20, 53
BanI	GGYRCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	296, 600, 1075
BciT130I	CCWGG	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	1053
BfaI	CTAG	3 cut(s)	152, 326, 428
BfmI	CTRYAG	2 cut(s)	64, 639
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	1053
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	4 cut(s)	70, 285, 316, 618
BmgT120I	GGNCC	6 cut(s)	70, 131, 285, 316, 618, 1133
BmiI	GGNNCC	7 cut(s)	30, 71, 72, 286, 620, 1134, 1166
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	4 cut(s)	110, 322, 829, 1154
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	410, 798, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 981, 982
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	410, 798, 1026
BseGI	GGATG	3 cut(s)	337, 667, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	39, 128
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	132, 877, 1025, 1135
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	4 cut(s)	56, 160, 298, 901
BslI	CCNNNNNNNGG	3 cut(s)	557, 981, 982
BsmFI	GGGAC	4 cut(s)	56, 160, 298, 901
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	4 cut(s)	132, 877, 1025, 1135
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	7, 404, 991
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	26, 85
BspANI	GGCC	4 cut(s)	132, 877, 1025, 1135
BspCNI	CTCAG	2 cut(s)	40, 127
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	7 cut(s)	30, 71, 72, 286, 620, 1134, 1166
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	15, 999
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	410, 798, 1026
BssMI	GATC	3 cut(s)	7, 404, 991
BssT1I	CCWWGG	2 cut(s)	410, 1026
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	2 cut(s)	447, 578
Bst6I	CTCTTC	4 cut(s)	212, 245, 477, 630
BstC8I	GCNNGC	4 cut(s)	337, 504, 602, 892
BstDEI	CTNAG	2 cut(s)	48, 114
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	337, 667, 1114
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	10, 407, 994
BstMBI	GATC	3 cut(s)	7, 404, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 606
BstNI	CCWGG	1 cut(s)	799
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	2 cut(s)	64, 639
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	4 cut(s)	132, 877, 1025, 1135
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	3 cut(s)	337, 667, 1114
BtsI	GCAGTG	2 cut(s)	59, 595
BtsIMutI	CAGTG	3 cut(s)	39, 59, 595
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	337, 504, 602, 892
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	6 cut(s)	70, 131, 285, 316, 618, 1133
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	29, 706
CspCI	CAANNNNNGTGG	2 cut(s)	908, 943
CviAII	CATG	6 cut(s)	143, 411, 499, 563, 964, 1021
CviQI	GTAC	2 cut(s)	29, 706
DdeI	CTNAG	2 cut(s)	48, 114
DpnI	GATC	3 cut(s)	9, 406, 993
DpnII	GATC	3 cut(s)	7, 404, 991
Eam1104I	CTCTTC	4 cut(s)	212, 245, 477, 630
EarI	CTCTTC	4 cut(s)	212, 245, 477, 630
Eco130I	CCWWGG	2 cut(s)	410, 1026
Eco47I	GGWCC	4 cut(s)	70, 285, 316, 618
Eco57I	CTGAAG	5 cut(s)	179, 390, 437, 856, 872
EcoO109I	RGGNCCY	3 cut(s)	70, 131, 618
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	410, 1026
ErhI	CCWWGG	2 cut(s)	410, 1026
FaeI	CATG	6 cut(s)	146, 414, 502, 566, 967, 1024
FaqI	GGGAC	4 cut(s)	56, 160, 298, 901
FatI	CATG	6 cut(s)	142, 410, 498, 562, 963, 1020
FokI	GGATG	3 cut(s)	344, 654, 1121
FspBI	CTAG	3 cut(s)	152, 326, 428
HaeIII	GGCC	4 cut(s)	132, 877, 1025, 1135
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	146, 414, 502, 566, 967, 1024
HincII	GTYRAC	1 cut(s)	1157
HindII	GTYRAC	1 cut(s)	1157
HinfI	GANTC	4 cut(s)	322, 914, 1049, 1153
HphI	GGTGA	5 cut(s)	373, 399, 732, 964, 997
Hpy166II	GTNNAC	8 cut(s)	60, 316, 364, 868, 972, 1096, 1114, 1157
Hpy188I	TCNGA	3 cut(s)	370, 404, 1013
Hpy188III	TCNNGA	9 cut(s)	11, 260, 428, 479, 563, 629, 727, 782, 1046
Hpy8I	GTNNAC	8 cut(s)	60, 316, 364, 868, 972, 1096, 1114, 1157
HpyAV	CCTTC	3 cut(s)	154, 847, 982
HpyCH4III	ACNGT	2 cut(s)	447, 578
HpyCH4IV	ACGT	1 cut(s)	1017
HpyCH4V	TGCA	5 cut(s)	60, 206, 281, 842, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 606
HpyF3I	CTNAG	2 cut(s)	48, 114
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	6 cut(s)	146, 414, 502, 566, 967, 1024
KflI	GGGWCCC	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	7, 404, 991
LmnI	GCTCC	1 cut(s)	1030
LweI	GCATC	4 cut(s)	110, 322, 829, 1154
MaeI	CTAG	3 cut(s)	152, 326, 428
MaeII	ACGT	1 cut(s)	1017
MalI	GATC	3 cut(s)	9, 406, 993
MboI	GATC	3 cut(s)	7, 404, 991
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1137
MlyI	GAGTC	3 cut(s)	923, 1058, 1162
MnlI	CCTC	7 cut(s)	123, 517, 599, 633, 850, 1099, 1155
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	3 cut(s)	516, 678, 882
MspR9I	CCNGG	1 cut(s)	799
Mva1269I	GAATGC	1 cut(s)	1007
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	503, 606
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	3 cut(s)	7, 404, 991
NlaIII	CATG	6 cut(s)	146, 414, 502, 566, 967, 1024
NlaIV	GGNNCC	7 cut(s)	30, 71, 72, 286, 620, 1134, 1166
PagI	TCATGA	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	1148
PctI	GAATGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	322
PleI	GAGTC	3 cut(s)	922, 1057, 1161
PpsI	GAGTC	3 cut(s)	922, 1057, 1161
PpuMI	RGGWCCY	2 cut(s)	70, 618
Psp5II	RGGWCCY	2 cut(s)	70, 618
Psp6I	CCWGG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	7 cut(s)	30, 71, 72, 286, 620, 1134, 1166
PspPI	GGNCC	6 cut(s)	70, 131, 285, 316, 618, 1133
PspPPI	RGGWCCY	2 cut(s)	70, 618
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	30, 707
RsaNI	GTAC	2 cut(s)	29, 706
SaqAI	TTAA	3 cut(s)	516, 678, 882
Sau3AI	GATC	3 cut(s)	7, 404, 991
Sau96I	GGNCC	6 cut(s)	70, 131, 285, 316, 618, 1133
SchI	GAGTC	3 cut(s)	923, 1058, 1162
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	4 cut(s)	110, 322, 829, 1154
SfcI	CTRYAG	2 cut(s)	64, 639
SinI	GGWCC	4 cut(s)	70, 285, 316, 618
Sse9I	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1137
SsiI	CCGC	2 cut(s)	26, 85
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	3 cut(s)	152, 326, 428
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	2 cut(s)	410, 1026
TaaI	ACNGT	2 cut(s)	447, 578
TaiI	ACGT	1 cut(s)	1020
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	8 cut(s)	94, 196, 385, 692, 923, 931, 977, 1137
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	516, 678, 882
Tru9I	TTAA	3 cut(s)	516, 678, 882
TscAI	CASTG	3 cut(s)	39, 59, 602
TspDTI	ATGAA	8 cut(s)	128, 232, 243, 331, 543, 579, 656, 980
TspGWI	ACGGA	3 cut(s)	182, 602, 1157
TspRI	CASTG	3 cut(s)	39, 59, 602
VneI	GTGCAC	1 cut(s)	58
VpaK11BI	GGWCC	4 cut(s)	70, 285, 316, 618
XapI	RAATTY	4 cut(s)	94, 196, 692, 923
XbaI	TCTAGA	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	3 cut(s)	152, 326, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.