Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

2952997 .. 2954049

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGTAGAACCTCAGAGTGAACAAAGAGAGAATGCACCCGTATTGTTCTTGCAGGAATGGTGTATCTATAGGGTTCCCAGCCAGCTCCGCAATGTAGATGAAGCAGCATACACTCCTCAAACACTTTCAATAGGGCCTTTCCACCATGGAAATCCAAAACTGAGGGACATGGAGGCCCATAAGAACAAATATTATGAGTTGTTTTGCAGACGTTCTTCGAAAAGTGAGGACGAACTAAGGAGCTTCATGATGGATCATCGAGAAACAATTCTAAATTGTTATGCAGGTACCTTTAAATGTGAGATCGACTTTTTGAACCTCATCCTAGTTGACGCCTGCTTCATAATTGAACTCTTTTTGACTAATTCTGAACAAGAACAACATAATGCAAATTATTATATACTGAGATCACCGTGGCTGAGGAAAACGGTGGAGAGGGACCTGATACTGTTGGAAAATCAGCTTCCTTATTTTCTTCTTCAAAAGCTATATGACTTTGCCATACCAACCTTTTCCAATGGCCATCTTGGCAATGGAGACCAAGCACAAGTTGGGGGACATGCCCATAAAGATAGCACCAACAGTCAGCAATATTACTTCCCTTGCTTCCAGCCCGGTGATTTTCAAGAGAACTCCATCCAATCTGAACCTATTCAACGTGGCTTATTTATTGAACTTACCTGTAAGTTTTTTAAGGCATACACTAAGGGAAAATCTGTCAGGAACGGATTTGAGCCGAAACACTTCACTGATTTGGTTAGACACTTTCTATGTCCATACGAGGAACTGTTGTGGGAAGAAAATTATGATCGGCCCGTCAAAATTAAATACCATGCAACAAAGCTGAAGGTTGCAGGAGTGAAGTTTATGCCACTTAGAGAACCATTTGTTATAAAGGAAGACCCTGTGTTGACGTTTAACTCGGCATGTTTGGCACATAAGGAGTTGAAGCTTACAAGACTTTGGGCAGAGTATGAAGCAGGATGCATTTTTCGAAACATCATGGCCTTGGAACAACTTATGTATCCAAAAAAGCCTTATGTTTGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

350

Amino Acids

41.23

Weight (kDa)

6.64

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	22 - 349	1.6e-59	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
Acc36I	ACCTGC	2 cut(s)	275, 1038
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	8 cut(s)	129, 316, 350, 482, 626, 656, 674, 949
AluBI	AGCT	6 cut(s)	85, 243, 463, 487, 844, 952
AluI	AGCT	6 cut(s)	85, 243, 463, 487, 844, 952
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	5 cut(s)	134, 174, 520, 812, 1005
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	3 cut(s)	267, 651, 743
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	4 cut(s)	134, 175, 439, 813
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	2 cut(s)	402, 629
AsuII	TTCGAA	2 cut(s)	218, 994
AvaII	GGWCC	1 cut(s)	439
BaeI	ACNNNNGTAYC	2 cut(s)	1007, 1040
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	906
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	3 cut(s)	244, 531, 644
BciVI	GTATCC	1 cut(s)	1035
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	2 cut(s)	275, 1038
BfuI	GTATCC	1 cut(s)	1035
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	4 cut(s)	134, 175, 439, 813
BmiI	GGNNCC	3 cut(s)	75, 289, 440
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	974
BpiI	GAAGAC	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	2 cut(s)	218, 994
BpuMI	CCSGG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	145, 413, 1008
Bse3DI	GCAATG	2 cut(s)	97, 538
BseDI	CCNNGG	3 cut(s)	145, 413, 1008
BseGI	GGATG	3 cut(s)	321, 636, 989
BseMI	GCAATG	2 cut(s)	97, 538
BseMII	CTCAG	4 cut(s)	26, 152, 395, 410
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	5 cut(s)	136, 176, 522, 814, 1007
BshNI	GGYRCC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	3 cut(s)	179, 452, 570
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	3 cut(s)	179, 452, 570
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	5 cut(s)	136, 176, 522, 814, 1007
Bso31I	GGTCTC	1 cut(s)	531
Bsp119I	TTCGAA	2 cut(s)	218, 994
Bsp143I	GATC	4 cut(s)	253, 303, 407, 808
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	5 cut(s)	136, 176, 522, 814, 1007
BspCNI	CTCAG	4 cut(s)	25, 153, 396, 411
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	75, 289, 440
BspMI	ACCTGC	2 cut(s)	275, 1038
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	2 cut(s)	218, 994
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	97, 538
BssECI	CCNNGG	3 cut(s)	145, 413, 1008
BssMI	GATC	4 cut(s)	253, 303, 407, 808
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	145, 1008
Bst4CI	ACNGT	5 cut(s)	414, 430, 450, 584, 789
BstACI	GRCGYC	1 cut(s)	333
BstBI	TTCGAA	2 cut(s)	218, 994
BstC8I	GCNNGC	2 cut(s)	83, 337
BstDEI	CTNAG	7 cut(s)	12, 161, 236, 404, 419, 705, 875
BstDSI	CCRYGG	2 cut(s)	145, 413
BstF5I	GGATG	3 cut(s)	321, 636, 989
BstKTI	GATC	4 cut(s)	256, 306, 410, 811
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	4 cut(s)	253, 303, 407, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 528, 932
BstNSI	RCATGY	2 cut(s)	563, 930
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	1035
BsuRI	GGCC	5 cut(s)	136, 176, 522, 814, 1007
BtgI	CCRYGG	2 cut(s)	145, 413
BtsCI	GGATG	3 cut(s)	321, 636, 989
BtsIMutI	CAGTG	1 cut(s)	747
BveI	ACCTGC	2 cut(s)	275, 1038
Cac8I	GCNNGC	2 cut(s)	83, 337
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	4 cut(s)	134, 175, 439, 813
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	7 cut(s)	146, 169, 247, 560, 833, 927, 1003
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	7 cut(s)	12, 161, 236, 404, 419, 705, 875
DpnI	GATC	4 cut(s)	255, 305, 409, 810
DpnII	GATC	4 cut(s)	253, 303, 407, 808
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	145, 1008
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	866
EcoO109I	RGGNCCY	2 cut(s)	134, 439
EcoT14I	CCWWGG	2 cut(s)	145, 1008
EcoT22I	ATGCAT	1 cut(s)	989
ErhI	CCWWGG	2 cut(s)	145, 1008
FaeI	CATG	7 cut(s)	149, 172, 250, 563, 836, 930, 1006
FaqI	GGGAC	3 cut(s)	179, 452, 570
FatI	CATG	7 cut(s)	145, 168, 246, 559, 832, 926, 1002
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	308, 623, 996
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	5 cut(s)	136, 176, 522, 814, 1007
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	7 cut(s)	149, 172, 250, 563, 836, 930, 1006
HincII	GTYRAC	2 cut(s)	331, 912
HindII	GTYRAC	2 cut(s)	331, 912
HindIII	AAGCTT	1 cut(s)	950
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	2 cut(s)	402, 629
Hpy166II	GTNNAC	3 cut(s)	20, 331, 912
Hpy188I	TCNGA	3 cut(s)	15, 370, 646
Hpy188III	TCNNGA	4 cut(s)	247, 260, 626, 721
Hpy8I	GTNNAC	3 cut(s)	20, 331, 912
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	5 cut(s)	414, 430, 450, 584, 789
HpyCH4IV	ACGT	3 cut(s)	211, 658, 914
HpyCH4V	TGCA	9 cut(s)	35, 52, 207, 284, 389, 836, 854, 987, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 528, 932
HpyF3I	CTNAG	7 cut(s)	12, 161, 236, 404, 419, 705, 875
HpySE526I	ACGT	3 cut(s)	211, 658, 914
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	7 cut(s)	149, 172, 250, 563, 836, 930, 1006
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	253, 303, 407, 808
LmnI	GCTCC	2 cut(s)	90, 240
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	974
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	3 cut(s)	211, 658, 914
MalI	GATC	4 cut(s)	255, 305, 409, 810
MboI	GATC	4 cut(s)	253, 303, 407, 808
MboII	GAAGA	5 cut(s)	207, 467, 470, 809, 911
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	7 cut(s)	267, 274, 345, 364, 391, 802, 822
MluNI	TGGCCA	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	9 cut(s)	21, 126, 156, 166, 220, 329, 414, 429, 775
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	989
MroXI	GAANNNNTTC	3 cut(s)	267, 651, 743
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	4 cut(s)	294, 693, 825, 918
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	87, 528, 932
NciI	CCSGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	4 cut(s)	253, 303, 407, 808
NlaIII	CATG	7 cut(s)	149, 172, 250, 563, 836, 930, 1006
NlaIV	GGNNCC	3 cut(s)	75, 289, 440
NmeAIII	GCCGAG	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	989
NspI	RCATGY	2 cut(s)	563, 930
NspV	TTCGAA	2 cut(s)	218, 994
PagI	TCATGA	1 cut(s)	246
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	3 cut(s)	267, 651, 743
PkrI	GCNGC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	893
Psp5II	RGGWCCY	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	75, 289, 440
PspPI	GGNCC	4 cut(s)	134, 175, 439, 813
PspPPI	RGGWCCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	294, 693, 825, 918
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	253, 303, 407, 808
Sau96I	GGNCC	4 cut(s)	134, 175, 439, 813
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	974
SfcI	CTRYAG	1 cut(s)	67
SfuI	TTCGAA	2 cut(s)	218, 994
SinI	GGWCC	1 cut(s)	439
Sse9I	AATT	7 cut(s)	267, 274, 345, 364, 391, 802, 822
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	2 cut(s)	191, 593
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	145, 1008
TaaI	ACNGT	5 cut(s)	414, 430, 450, 584, 789
TaiI	ACGT	3 cut(s)	214, 661, 917
TaqI	TCGA	4 cut(s)	218, 259, 306, 994
TasI	AATT	7 cut(s)	267, 274, 345, 364, 391, 802, 822
Tru1I	TTAA	4 cut(s)	294, 693, 825, 918
Tru9I	TTAA	4 cut(s)	294, 693, 825, 918
TscAI	CASTG	1 cut(s)	754
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	114, 235, 331, 990
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	2 cut(s)	563, 930
XcmI	CCANNNNNNNNNTGG	2 cut(s)	530, 548
XmnI	GAANNNNTTC	3 cut(s)	267, 651, 743
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.