Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

27951913 .. 27953211

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGACTTCGCAAATGAATGAAATAAGTGTTCACGTTGAGCGCACTGATCCAGAACCAGTCTTGGACGATCGTGATTCTATTGTGGAACCTGAGATTGCCGTCCATCCTGAACCTGTTCAGCATCAATTTCTAACCCTTGCCTACAAAGTGAAAGGTGACTGTGTTAGTAACCAAAAGAAATGTAAATATGATGTAAGAAAGCTTAAGGCAGCAGGGGTAAAGTTTACACATCTTGCAGAACCCTTTGTCATAGAGCGTTTGTCAACAGGGGTTAACAGCTATATATCCAAGTTAGCAGGTCTTACAACTAAGGAGTTGAAGCTTACAAGATTCTGGGCAACATATGATGCAGAAAGCGTCATAAGAAACATTATGGCCTTGGAACAGCTCATCTACCCAAAAAAGGCTTATATTTGCAGCTATTTTTTGCTACTTAGTCAACTTGTCAACACTGTGGAAGACATAGATTTGCTGATCAAGGACGGAGTGGTCGAGAACTTGCTAGGCAGCAACAAATCGGTAGAAAAGCTTATTAACTCATTCTGCGTGCACATTGTGGAGGAAATATCCTGCTATTCGGATATCTATGACCAGCTTAATGAGCACTATGATACTAGTTTAGGCAATCGCCGTATGGCAACCCTGAAACAAGTTTACTTCAAGGATCTTTGGACAGGCAGTGCAACTATACTTGGACTGGTTGTCCTGGTTTTCTCAATCATTGCTACCATCAAGTCGCTCACCTCTCATAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

253

Amino Acids

28.52

Weight (kDa)

6.18

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	58 - 238	3.8e-34	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	41, 672
AdeI	CACNNNGTG	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	319, 661
AhdI	GACNNNNNGTC	1 cut(s)	701
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	705
AluBI	AGCT	7 cut(s)	202, 279, 322, 388, 420, 529, 595
AluI	AGCT	7 cut(s)	202, 279, 322, 388, 420, 529, 595
Alw21I	GWGCWC	2 cut(s)	552, 606
Alw44I	GTGCAC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	41, 672
AoxI	GGCC	1 cut(s)	375
ApaLI	GTGCAC	1 cut(s)	548
ApeKI	GCWGC	3 cut(s)	209, 417, 507
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	167, 733
BaeGI	GKGCMC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	552, 606
BbvI	GCAGC	3 cut(s)	221, 429, 519
BccI	CCATC	2 cut(s)	111, 737
BceAI	ACGGC	2 cut(s)	83, 615
BciT130I	CCWGG	1 cut(s)	707
BclI	TGATCA	1 cut(s)	474
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	2 cut(s)	503, 615
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	210, 418, 508
BlsI	GCNGC	3 cut(s)	211, 419, 509
Bme1390I	CCNGG	1 cut(s)	707
BmeRI	GACNNNNNGTC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	2 cut(s)	130, 337
BpiI	GAAGAC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	56, 702
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	56, 702
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	221, 429, 519
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	552, 606
BslI	CCNNNNNNNGG	1 cut(s)	403
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	552, 606
Bsp143I	GATC	4 cut(s)	46, 67, 474, 664
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	41, 672
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	56, 702
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	4 cut(s)	46, 67, 474, 664
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	2 cut(s)	161, 454
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	90, 309, 434
BstF5I	GGATG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	49, 70, 477, 667
BstMBI	GATC	4 cut(s)	46, 67, 474, 664
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNI	CCWGG	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	221, 429, 519
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	3 cut(s)	42, 450, 685
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	42
CseI	GACGC	1 cut(s)	346
CviJI	RGCY	9 cut(s)	202, 279, 322, 377, 388, 407, 420, 529, 595
CviKI_1	RGCY	9 cut(s)	202, 279, 322, 377, 388, 407, 420, 529, 595
DdeI	CTNAG	3 cut(s)	90, 309, 434
DpnI	GATC	4 cut(s)	48, 69, 476, 666
DpnII	GATC	4 cut(s)	46, 67, 474, 664
DraIII	CACNNNGTG	1 cut(s)	556
DrdI	GACNNNNNNGTC	1 cut(s)	488
DriI	GACNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1105I	GACNNNNNGTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	705
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	210, 418, 508
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	210, 418, 508
FspBI	CTAG	2 cut(s)	503, 615
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	210, 418, 508
HaeIII	GGCC	1 cut(s)	377
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	4 cut(s)	264, 274, 440, 448
HindII	GTYRAC	4 cut(s)	264, 274, 440, 448
HindIII	AAGCTT	3 cut(s)	200, 320, 527
HinfI	GANTC	2 cut(s)	74, 330
HpaI	GTTAAC	1 cut(s)	274
HphI	GGTGA	2 cut(s)	167, 733
Hpy166II	GTNNAC	8 cut(s)	31, 225, 264, 274, 440, 448, 550, 655
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	4 cut(s)	50, 71, 107, 493
Hpy8I	GTNNAC	8 cut(s)	31, 225, 264, 274, 440, 448, 550, 655
HpyCH4III	ACNGT	2 cut(s)	161, 454
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	236, 350, 417, 550, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	3 cut(s)	90, 309, 434
HpySE526I	ACGT	1 cut(s)	33
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	474
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	46, 67, 474, 664
Lsp1109I	GCAGC	3 cut(s)	221, 429, 519
LweI	GCATC	2 cut(s)	130, 337
MaeI	CTAG	2 cut(s)	503, 615
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	155, 167
MalI	GATC	4 cut(s)	48, 69, 476, 666
MboI	GATC	4 cut(s)	46, 67, 474, 664
MboII	GAAGA	1 cut(s)	470
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	2 cut(s)	552, 606
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	2 cut(s)	553, 754
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	4 cut(s)	204, 273, 534, 597
MspCI	CTTAAG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	601
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	46, 67, 474, 664
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	74, 330
PkrI	GCNGC	3 cut(s)	211, 419, 509
Ple19I	CGATCG	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	664
PvuI	CGATCG	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	204, 273, 534, 597
SatI	GCNGC	3 cut(s)	210, 418, 508
Sau3AI	GATC	4 cut(s)	46, 67, 474, 664
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	2 cut(s)	552, 606
SfaNI	GCATC	2 cut(s)	130, 337
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	1 cut(s)	125
SspMI	CTAG	2 cut(s)	503, 615
StyD4I	CCNGG	1 cut(s)	705
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	161, 454
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	74, 330
Tru1I	TTAA	4 cut(s)	204, 273, 534, 597
Tru9I	TTAA	4 cut(s)	204, 273, 534, 597
TscAI	CASTG	3 cut(s)	49, 457, 685
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	209, 417, 507
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	29, 33
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	3 cut(s)	49, 457, 685
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	503, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.