Rmu_sc0006463.1_g000017

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006463.1
Physical Location & Seq
Reverse (-)
75304 .. 81768
6465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006463.1_g000017.1.cds

Sequence Viewer

Length: 1560 bp
atggggggaagaagaagaacgaaggtattgaggaccgatgatgacctccccgattctttccccagcacctccaggcttaaagtcaaagatagaggaagacatctaaaaaggtcaaagtcgacttcacagctggagggtctgaaaactaagagtgaagctgtacaaaagtcggacaagccggaaaagtggtgtatctatagggttcccagcaagctgcgccgtgtcaatgaagcagcatattcccctcaattactttcaattggccttttccaccatggcaaagcagaattgagggacatggaggaccataaaaaaaaatatgtgaattacttttttgaccgcactttgaaagataaggctgcggttagaagattcattgaagaacgtcgaaagaaaattcttcattgttatgcagggaagattgagctcgatgaaggcactgctgttgatataattctagatgatgcatgcttcatcattgagctctttctgatgaaatccgaaagagaaaatggtgatgaatacaaaaaggattacatattaagtgcaccttggatgtggaaagctgcagagcaggatctgatactgtttgaaaatcagcttccttattttcttcttcaagaactatatgactttgcatttcccggagcgtcttccatttcccatcctggaaaagaaatacagtcacatagatccagcaccaataacaagcggaactgcttggtttgcttccaatactgcttcccttgctcctgtgggatccatcccaacgatcgtcacgttataaagatggatcataagtctgagcctgatcatcacgttataaagatggatcatgagtccgagcctgaacgtattcatgatcgctttcttgagctggcctgtaattttttcaaaaattacagtaacggaaaatctgttagggtaaaaccaaaacatttcactgatttggttagacattttatgtgtccagaagaagaaatgaagtggaaagaaaatactaccaataatctatacaatatgagaaagctgacggcagcaggagttaactttatgccatttcctaaagatggacgctttgtggtgaaagaaggtaacattttaaagttgacatgttttaaaatgatggacttgaagctttcacagttttgtgtaaaggatgagacggaatgtattattcgcaatgtcatggcagttgagcagtttctgtatccagacgatgcttatgtttgcaattacttcttgctgatggataaacttgtagacactgtggaagatgtggatttgctgattcggaataaagtgatcattaacatgctaggcagcaacgaagcagtggcggaactggtgaaccacctatgtgatcagattctcgaagaaagatcctgctatgttgatatttgtaaaaaactaaatgaccactacgagaattcttggaaccgttgcttgacaaccctgaaacgagtttacttcaaggatctgtggacaggcagttcaacttttttcggtgttgttgtactgattttctctatcattggatccattaagtcattcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

60.77

Weight (kDa)

8.55

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 785, 824
AccI GTMKAC 2 cut(s) 119, 1263
AciI CCGC 4 cut(s) 340, 362, 712, 1340
AcsI RAATTY 2 cut(s) 396, 1429
AfaI GTAC 2 cut(s) 162, 1518
AfiI CCNNNNNNNGG 1 cut(s) 1070
AflIII ACRYGT 1 cut(s) 1112
AjnI CCWGG 2 cut(s) 71, 667
AleI CACNNNNGTG 1 cut(s) 1359
AloI GAACNNNNNNTCC 2 cut(s) 1477, 1509
Alw21I GWGCWC 3 cut(s) 429, 486, 550
Alw26I GTCTC 1 cut(s) 1157
Alw44I GTGCAC 1 cut(s) 546
AlwNI CAGNNNCTG 2 cut(s) 580, 1207
AoxI GGCC 2 cut(s) 262, 879
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 6 cut(s) 214, 233, 359, 566, 1037, 1323
ApoI RAATTY 2 cut(s) 396, 1429
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 33, 304
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 3 cut(s) 527, 1096, 1360
AvaII GGWCC 2 cut(s) 33, 304
BaeGI GKGCMC 1 cut(s) 550
BamHI GGATCC 2 cut(s) 759, 1538
BanII GRGCYC 2 cut(s) 429, 486
BbsI GAAGAC 2 cut(s) 103, 645
Bbv12I GWGCWC 3 cut(s) 429, 486, 550
BbvI GCAGC 6 cut(s) 201, 245, 346, 553, 1049, 1335
BccI CCATC 7 cut(s) 672, 771, 784, 823, 1064, 1120, 1243
BceAI ACGGC 2 cut(s) 204, 1050
BciT130I CCWGG 2 cut(s) 73, 669
BciVI GTATCC 1 cut(s) 1221
BclI TGATCA 3 cut(s) 811, 1305, 1363
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 1157
BfaI CTAG 2 cut(s) 458, 1319
BfmI CTRYAG 2 cut(s) 196, 567
BfuI GTATCC 1 cut(s) 1221
BisI GCNGC 6 cut(s) 215, 234, 360, 567, 1038, 1324
BlsI GCNGC 6 cut(s) 216, 235, 361, 568, 1039, 1325
Bme1390I CCNGG 3 cut(s) 73, 645, 669
Bme18I GGWCC 2 cut(s) 33, 304
BmgT120I GGNCC 2 cut(s) 33, 304
BmiI GGNNCC 4 cut(s) 204, 761, 1439, 1540
BmrFI CCNGG 3 cut(s) 73, 645, 669
BmsI GCATC 2 cut(s) 454, 1210
BpiI GAAGAC 2 cut(s) 103, 645
BpmI CTGGAG 2 cut(s) 55, 152
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 1 cut(s) 645
BsaJI CCNNGG 2 cut(s) 274, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 1070
Bse1I ACTGG 1 cut(s) 1350
Bse3DI GCAATG 1 cut(s) 1189
BseBI CCWGG 2 cut(s) 73, 669
BseDI CCNNGG 2 cut(s) 274, 551
BseGI GGATG 4 cut(s) 561, 664, 763, 1165
BseLI CCNNNNNNNGG 1 cut(s) 1070
BseMI GCAATG 1 cut(s) 1189
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 1 cut(s) 1350
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 6 cut(s) 201, 245, 346, 553, 1049, 1335
BseYI CCCAGC 2 cut(s) 62, 206
Bsh1285I CGRYCG 1 cut(s) 775
BshFI GGCC 2 cut(s) 264, 881
BsiEI CGRYCG 1 cut(s) 775
BsiHKAI GWGCWC 3 cut(s) 429, 486, 550
BsiSI CCGG 2 cut(s) 179, 645
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 1070
BsmAI GTCTC 1 cut(s) 1157
BsmBI CGTCTC 1 cut(s) 1157
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 2 cut(s) 264, 881
Bsp1286I GDGCHC 3 cut(s) 429, 486, 550
Bsp1407I TGTACA 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 4 cut(s) 340, 362, 712, 1340
BspANI GGCC 2 cut(s) 264, 881
BspCNI CTCAG 1 cut(s) 796
BspHI TCATGA 2 cut(s) 835, 859
BspLI GGNNCC 4 cut(s) 204, 761, 1439, 1540
BspMAI CTGCAG 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 1189
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 1 cut(s) 1350
BssECI CCNNGG 2 cut(s) 274, 551
BssT1I CCWWGG 2 cut(s) 274, 551
Bst2UI CCWGG 2 cut(s) 73, 669
Bst4CI ACNGT 6 cut(s) 588, 684, 905, 1146, 1270, 1442
BstAUI TGTACA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 212, 469, 879
BstDEI CTNAG 2 cut(s) 147, 804
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 4 cut(s) 561, 664, 763, 1165
BstHHI GCGC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 1157
BstMCI CGRYCG 1 cut(s) 775
BstMWI GCNNNNNNNGC 3 cut(s) 216, 726, 747
BstNI CCWGG 2 cut(s) 73, 669
BstNSI RCATGY 3 cut(s) 471, 1116, 1318
BstSCI CCNGG 3 cut(s) 71, 643, 667
BstSFI CTRYAG 2 cut(s) 196, 567
BstSLI GKGCMC 1 cut(s) 550
BstV1I GCAGC 6 cut(s) 201, 245, 346, 553, 1049, 1335
BstV2I GAAGAC 2 cut(s) 103, 645
BstX2I RGATCY 6 cut(s) 577, 692, 759, 1382, 1477, 1538
BstYI RGATCY 6 cut(s) 577, 692, 759, 1382, 1477, 1538
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 2 cut(s) 264, 881
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 4 cut(s) 561, 664, 763, 1165
BtsI GCAGTG 2 cut(s) 438, 1341
BtsIMutI CAGTG 4 cut(s) 438, 942, 1266, 1341
Cac8I GCNNGC 3 cut(s) 212, 469, 879
CaiI CAGNNNCTG 2 cut(s) 580, 1207
CciI TCATGA 2 cut(s) 835, 859
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 33, 304
CseI GACGC 2 cut(s) 639, 1083
Csp6I GTAC 2 cut(s) 161, 1517
CviAII CATG 8 cut(s) 275, 298, 468, 836, 860, 1113, 1189, 1315
CviQI GTAC 2 cut(s) 161, 1517
DdeI CTNAG 2 cut(s) 147, 804
DraI TTTAAA 2 cut(s) 1104, 1120
EciI GGCGGA 1 cut(s) 1355
Ecl136II GAGCTC 2 cut(s) 427, 484
Eco130I CCWWGG 2 cut(s) 274, 551
Eco24I GRGCYC 2 cut(s) 429, 486
Eco47I GGWCC 2 cut(s) 33, 304
Eco53kI GAGCTC 2 cut(s) 427, 484
EcoICRI GAGCTC 2 cut(s) 427, 484
EcoRI GAATTC 1 cut(s) 1429
EcoRII CCWGG 2 cut(s) 71, 667
EcoT14I CCWWGG 2 cut(s) 274, 551
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 429, 486
ErhI CCWWGG 2 cut(s) 274, 551
Esp3I CGTCTC 1 cut(s) 1157
FaeI CATG 8 cut(s) 278, 301, 471, 839, 863, 1116, 1192, 1318
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 308
FatI CATG 8 cut(s) 274, 297, 467, 835, 859, 1112, 1188, 1314
FbaI TGATCA 3 cut(s) 811, 1305, 1363
FblI GTMKAC 2 cut(s) 119, 1263
Fnu4HI GCNGC 6 cut(s) 215, 234, 360, 567, 1038, 1324
FokI GGATG 4 cut(s) 568, 651, 750, 1172
FriOI GRGCYC 2 cut(s) 429, 486
Fsp4HI GCNGC 6 cut(s) 215, 234, 360, 567, 1038, 1324
FspBI CTAG 2 cut(s) 458, 1319
GlaI GCGC 1 cut(s) 218
GluI GCNGC 6 cut(s) 215, 234, 360, 567, 1038, 1324
GsaI CCCAGC 2 cut(s) 66, 210
GsuI CTGGAG 2 cut(s) 55, 152
HaeIII GGCC 2 cut(s) 264, 881
HapII CCGG 2 cut(s) 179, 645
HgaI GACGC 2 cut(s) 639, 1083
HhaI GCGC 1 cut(s) 219
Hin1II CATG 8 cut(s) 278, 301, 471, 839, 863, 1116, 1192, 1318
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 3 cut(s) 120, 1048, 1110
HindII GTYRAC 3 cut(s) 120, 1048, 1110
HindIII AAGCTT 1 cut(s) 1136
HinfI GANTC 5 cut(s) 53, 372, 839, 1291, 1369
HpaI GTTAAC 1 cut(s) 1048
HpaII CCGG 2 cut(s) 179, 645
HphI GGTGA 3 cut(s) 527, 1096, 1360
Hpy166II GTNNAC 8 cut(s) 120, 548, 1048, 1110, 1264, 1351, 1468, 1485
Hpy188I TCNGA 9 cut(s) 141, 172, 492, 502, 582, 805, 844, 1296, 1368
Hpy188III TCNNGA 8 cut(s) 458, 620, 836, 860, 872, 971, 1214, 1373
Hpy8I GTNNAC 8 cut(s) 120, 548, 1048, 1110, 1264, 1351, 1468, 1485
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 3 cut(s) 16, 428, 1085
HpyCH4III ACNGT 6 cut(s) 588, 684, 905, 1146, 1270, 1442
HpyCH4IV ACGT 4 cut(s) 385, 780, 819, 853
HpyCH4V TGCA 6 cut(s) 413, 467, 548, 569, 638, 1233
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 726, 747
HpyF3I CTNAG 2 cut(s) 147, 804
HpySE526I ACGT 4 cut(s) 385, 780, 819, 853
Hsp92II CATG 8 cut(s) 278, 301, 471, 839, 863, 1116, 1192, 1318
HspAI GCGC 1 cut(s) 217
Ksp22I TGATCA 3 cut(s) 811, 1305, 1363
KspAI GTTAAC 1 cut(s) 1048
LmnI GCTCC 2 cut(s) 647, 755
Lsp1109I GCAGC 6 cut(s) 201, 245, 346, 553, 1049, 1335
LweI GCATC 2 cut(s) 454, 1210
MaeI CTAG 2 cut(s) 458, 1319
MaeII ACGT 4 cut(s) 385, 780, 819, 853
MaeIII GTNAC 4 cut(s) 684, 776, 905, 1094
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 6 cut(s) 577, 692, 759, 1382, 1477, 1538
MhlI GDGCHC 3 cut(s) 429, 486, 550
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 24, 56, 79, 86, 127, 255, 285, 295
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 7 cut(s) 78, 542, 1047, 1103, 1119, 1311, 1545
MslI CAYNNNNRTG 3 cut(s) 408, 1313, 1359
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 179, 645
MspR9I CCNGG 3 cut(s) 73, 645, 669
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 2 cut(s) 73, 669
MwoI GCNNNNNNNGC 3 cut(s) 216, 726, 747
NciI CCSGG 1 cut(s) 645
NcoI CCATGG 1 cut(s) 274
NlaIII CATG 8 cut(s) 278, 301, 471, 839, 863, 1116, 1192, 1318
NlaIV GGNNCC 4 cut(s) 204, 761, 1439, 1540
NmuCI GTSAC 2 cut(s) 684, 776
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 3 cut(s) 471, 1116, 1318
OliI CACNNNNGTG 1 cut(s) 1359
PaeI GCATGC 1 cut(s) 471
PagI TCATGA 2 cut(s) 835, 859
PciI ACATGT 1 cut(s) 1112
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 4 cut(s) 53, 372, 1291, 1369
PfoI TCCNGGA 2 cut(s) 643, 667
PkrI GCNGC 6 cut(s) 216, 235, 361, 568, 1039, 1325
Ple19I CGATCG 1 cut(s) 775
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
PscI ACATGT 1 cut(s) 1112
PsiI TTATAA 2 cut(s) 785, 824
Psp124BI GAGCTC 2 cut(s) 429, 486
Psp6I CCWGG 2 cut(s) 71, 667
PspFI CCCAGC 2 cut(s) 62, 206
PspGI CCWGG 2 cut(s) 71, 667
PspN4I GGNNCC 4 cut(s) 204, 761, 1439, 1540
PspPI GGNCC 2 cut(s) 33, 304
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 2 cut(s) 580, 1207
PsuI RGATCY 6 cut(s) 577, 692, 759, 1382, 1477, 1538
PvuI CGATCG 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 2 cut(s) 162, 1518
RsaNI GTAC 2 cut(s) 161, 1517
RseI CAYNNNNRTG 3 cut(s) 408, 1313, 1359
SacI GAGCTC 2 cut(s) 429, 486
SalI GTCGAC 1 cut(s) 118
SaqAI TTAA 7 cut(s) 78, 542, 1047, 1103, 1119, 1311, 1545
SatI GCNGC 6 cut(s) 215, 234, 360, 567, 1038, 1324
Sau96I GGNCC 2 cut(s) 33, 304
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 3 cut(s) 73, 645, 669
SduI GDGCHC 3 cut(s) 429, 486, 550
SfaNI GCATC 2 cut(s) 454, 1210
SfcI CTRYAG 2 cut(s) 196, 567
SinI GGWCC 2 cut(s) 33, 304
SmiMI CAYNNNNRTG 3 cut(s) 408, 1313, 1359
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SphI GCATGC 1 cut(s) 471
SsiI CCGC 4 cut(s) 340, 362, 712, 1340
SspMI CTAG 2 cut(s) 458, 1319
SstI GAGCTC 2 cut(s) 429, 486
StyD4I CCNGG 3 cut(s) 71, 643, 667
StyI CCWWGG 2 cut(s) 274, 551
TaaI ACNGT 6 cut(s) 588, 684, 905, 1146, 1270, 1442
TaiI ACGT 4 cut(s) 388, 783, 822, 856
TaqI TCGA 4 cut(s) 119, 388, 429, 1374
TaqII GACCGA 1 cut(s) 50
TatI WGTACW 2 cut(s) 160, 1516
TfiI GAWTC 4 cut(s) 53, 372, 1291, 1369
Tru1I TTAA 7 cut(s) 78, 542, 1047, 1103, 1119, 1311, 1545
Tru9I TTAA 7 cut(s) 78, 542, 1047, 1103, 1119, 1311, 1545
TscAI CASTG 4 cut(s) 445, 949, 1273, 1341
TseFI GTSAC 2 cut(s) 684, 776
TseI GCWGC 6 cut(s) 214, 233, 359, 566, 1037, 1323
Tsp45I GTSAC 2 cut(s) 684, 776
TspDTI ATGAA 9 cut(s) 243, 364, 392, 447, 463, 509, 534, 848, 998
TspGWI ACGGA 2 cut(s) 924, 1181
TspRI CASTG 4 cut(s) 445, 949, 1273, 1341
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 2 cut(s) 33, 304
XapI RAATTY 2 cut(s) 396, 1429
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 3 cut(s) 471, 1116, 1318
XmiI GTMKAC 2 cut(s) 119, 1263
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 2 cut(s) 458, 1319
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.