Rh1AG200700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000821
Physical Location & Seq
Forward (+)
38099271 .. 38100557
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG200700.1

Sequence Viewer

Length: 1287 bp
ATGAATGGAACTAGTGTTCACGTTGAGCGCACTGAACCAGAACCAGTCTTGGACGAGTGGTGTATCTACAGGGTTCCCAGCAAACTCCGCAATGTAAATAAAGCTTCATACACTCCTCAATTACTTTCGATAGGCCCTTTCCACTATGGCAGTCCAAAACTGAAGGACATGGAAAGCCATAAACAGAAATATTATGAGAAATTTCTCAAACGCTGTTCAAAGGATGAGGCTGCACTGAAACGGTTCGTCAACCGACATTCGAACAGAATTCTTAGTTGTTATGCAGGTACCATCGAGTGCAGAGGCAACATTATCAACGTGATTCTAGTTGATGCTTGCTTCATCATTGAACTGTTTATGACAGAATCTGAAACAGAAAATCATCACATACTGAGGTCACCTTGGATGAGGAAAGCTGTAGAGACAGACTTAATACTGTTTGAAAATCAGATTCCTTATTATTTTCTTGAAGAGCTTTATGACTTCGCCATTTCCAGTCGTGATTCTAGTGCTGAAACTAAGATGGCCGTCCATCCTGAACCTGTTCAGCATCAATTTCTTACGCTTGCCTGTAAGTTCTTTGAAGAATATAACAAGAAGAAAAGACGTCTCAGGAATGGAGTAAACCTGAAACATTTCACTGATTTGGTGAGACATTTTGTGTGTACAGACAAAGTGGAAGATGACTGTGTTAGTAACCAAAAGAAATGTAAATATGATGTAAGAAAGCTTAAGGCAGCAGGGGTAAAGTTTACACATCTTGCAGAACCCTTTGTCATAGAGCCTTTGTCAACAAGGGTTAACAGCTATAGATCCAAGTTAGCAGGTCTTACAACTAAGGAGTTGAAGCTTACACGATTCTGGGCAACGTATGATGCAGAAAGCGTGATAAGAAATATTATGGCCTTGGAACAACTCATCTACCCAAAAAAGGCTTATATTTGCAGCTATTTTTTGCTACTTAGTCAACTTGTCAACACTGTGGAAGACATAGATTTGCTGATCAAGGACGGAGTGGTCGAGAACTTGCTAGGCAGCAACAAATCGGTGGAAAAGCTTATTAACTCATTCTGTGTGCACATTGTGGAGGAAATATCCTGCTATTCGGATATCTATGACCAGCTTAGTGAACACTATGAGACGAGTTTAGGCAATCGCCGTATGGCCACCCTGAAACAAGTTTACTTCAAGGATCTTTGGACAGGCAGTGCAACTATACTTGGACTGGTTGTCCTGGTTTTCTCAATCATTGGTACCATCAAGTCGCTCACCTGTCATAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

428

Amino Acids

49.61

Weight (kDa)

8.62

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 22 - 414 6e-84 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1016
AatII GACGTC 1 cut(s) 610
Acc36I ACCTGC 2 cut(s) 275, 815
Acc65I GGTACC 2 cut(s) 287, 1253
AccB1I GGYRCC 2 cut(s) 287, 1253
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 807, 1200
AcoI YGGCCR 2 cut(s) 525, 1164
AcsI RAATTY 2 cut(s) 200, 267
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 607
AdeI CACNNNGTG 1 cut(s) 1084
AfaI GTAC 3 cut(s) 289, 667, 1255
AfiI CCNNNNNNNGG 1 cut(s) 931
AflII CTTAAG 1 cut(s) 731
AgsI TTSAA 7 cut(s) 219, 350, 443, 470, 584, 847, 1189
AhdI GACNNNNNGTC 1 cut(s) 1229
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 1233
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 9 cut(s) 104, 416, 475, 730, 807, 850, 948, 1057, 1123
AluI AGCT 9 cut(s) 104, 416, 475, 730, 807, 850, 948, 1057, 1123
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 4 cut(s) 416, 614, 646, 1133
Alw44I GTGCAC 1 cut(s) 1076
AlwI GGATC 2 cut(s) 807, 1200
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 4 cut(s) 133, 525, 903, 1164
ApaLI GTGCAC 1 cut(s) 1076
ApeKI GCWGC 4 cut(s) 230, 737, 945, 1035
ApoI RAATTY 2 cut(s) 200, 267
Asp700I GAANNNNTTC 3 cut(s) 242, 543, 635
Asp718I GGTACC 2 cut(s) 287, 1253
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 390, 661, 1261
AsuII TTCGAA 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 1080
BalI TGGCCA 1 cut(s) 1166
BanI GGYRCC 2 cut(s) 287, 1253
BbsI GAAGAC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 1080
BbvI GCAGC 4 cut(s) 217, 749, 957, 1047
BccI CCATC 4 cut(s) 299, 517, 540, 1265
BceAI ACGGC 2 cut(s) 512, 1143
BciT130I CCWGG 1 cut(s) 1235
BclI TGATCA 1 cut(s) 1002
BcoDI GTCTC 4 cut(s) 416, 614, 646, 1133
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 4 cut(s) 12, 326, 507, 1031
BfmI CTRYAG 3 cut(s) 67, 417, 808
BfrI CTTAAG 1 cut(s) 731
BfuAI ACCTGC 2 cut(s) 275, 815
BisI GCNGC 4 cut(s) 231, 738, 946, 1036
BlsI GCNGC 4 cut(s) 232, 739, 947, 1037
Bme1390I CCNGG 1 cut(s) 1235
BmeRI GACNNNNNGTC 1 cut(s) 1229
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 75, 289, 1255
BmrFI CCNGG 1 cut(s) 1235
BmsI GCATC 3 cut(s) 322, 559, 865
BpiI GAAGAC 1 cut(s) 993
Bpu14I TTCGAA 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 2 cut(s) 401, 906
Bsc4I CCNNNNNNNGG 1 cut(s) 931
Bse1I ACTGG 3 cut(s) 44, 495, 1230
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 1235
BseDI CCNNGG 2 cut(s) 401, 906
BseGI GGATG 3 cut(s) 229, 411, 532
BseLI CCNNNNNNNGG 1 cut(s) 931
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 383, 625
BseNI ACTGG 3 cut(s) 44, 495, 1230
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 1080
BseXI GCAGC 4 cut(s) 217, 749, 957, 1047
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 2 cut(s) 216, 319
BshFI GGCC 4 cut(s) 135, 527, 905, 1166
BshNI GGYRCC 2 cut(s) 287, 1253
BsiHKAI GWGCWC 1 cut(s) 1080
BslI CCNNNNNNNGG 1 cut(s) 931
BsmAI GTCTC 4 cut(s) 416, 614, 646, 1133
BsmBI CGTCTC 2 cut(s) 614, 1133
BsnI GGCC 4 cut(s) 135, 527, 905, 1166
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 1080
Bsp1407I TGTACA 1 cut(s) 665
Bsp143I GATC 3 cut(s) 812, 1002, 1192
BspACI CCGC 1 cut(s) 88
BspANI GGCC 4 cut(s) 135, 527, 905, 1166
BspCNI CTCAG 2 cut(s) 384, 624
BspLI GGNNCC 3 cut(s) 75, 289, 1255
BspMI ACCTGC 2 cut(s) 275, 815
BspPI GGATC 2 cut(s) 807, 1200
BspQI GCTCTTC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 260
BspT107I GGYRCC 2 cut(s) 287, 1253
BspTI CTTAAG 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 665
BsrI ACTGG 3 cut(s) 44, 495, 1230
BssECI CCNNGG 2 cut(s) 401, 906
BssMI GATC 3 cut(s) 812, 1002, 1192
BssNI GRCGYC 1 cut(s) 607
BssT1I CCWWGG 2 cut(s) 401, 906
Bst2UI CCWGG 1 cut(s) 1235
Bst4CI ACNGT 5 cut(s) 243, 354, 438, 689, 982
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 607
BstAFI CTTAAG 1 cut(s) 731
BstAUI TGTACA 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 337, 567
BstDEI CTNAG 7 cut(s) 272, 392, 519, 611, 837, 962, 1124
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 3 cut(s) 229, 411, 532
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 815, 1005, 1195
BstMAI GTCTC 4 cut(s) 416, 614, 646, 1133
BstMBI GATC 3 cut(s) 812, 1002, 1192
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 1235
BstPI GGTNACC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 1233
BstSFI CTRYAG 3 cut(s) 67, 417, 808
BstSLI GKGCMC 1 cut(s) 1080
BstV1I GCAGC 4 cut(s) 217, 749, 957, 1047
BstV2I GAAGAC 1 cut(s) 993
BstX2I RGATCY 2 cut(s) 812, 1192
BstYI RGATCY 2 cut(s) 812, 1192
BsuRI GGCC 4 cut(s) 135, 527, 905, 1166
BtsCI GGATG 3 cut(s) 229, 411, 532
BtsI GCAGTG 1 cut(s) 1213
BtsIMutI CAGTG 5 cut(s) 30, 233, 639, 978, 1213
BveI ACCTGC 2 cut(s) 275, 815
Cac8I GCNNGC 2 cut(s) 337, 567
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 288, 666, 1254
CviAII CATG 1 cut(s) 169
CviQI GTAC 3 cut(s) 288, 666, 1254
DdeI CTNAG 7 cut(s) 272, 392, 519, 611, 837, 962, 1124
DpnI GATC 3 cut(s) 814, 1004, 1194
DpnII GATC 3 cut(s) 812, 1002, 1192
DraIII CACNNNGTG 1 cut(s) 1084
DrdI GACNNNNNNGTC 1 cut(s) 1016
DriI GACNNNNNGTC 1 cut(s) 1229
DseDI GACNNNNNNGTC 1 cut(s) 1016
EaeI YGGCCR 2 cut(s) 525, 1164
Eam1104I CTCTTC 1 cut(s) 465
Eam1105I GACNNNNNGTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 401, 906
Eco32I GATATC 1 cut(s) 1111
Eco57I CTGAAG 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 1233
EcoRV GATATC 1 cut(s) 1111
EcoT14I CCWWGG 2 cut(s) 401, 906
ErhI CCWWGG 2 cut(s) 401, 906
Esp3I CGTCTC 2 cut(s) 614, 1133
FaeI CATG 1 cut(s) 172
FatI CATG 1 cut(s) 168
FbaI TGATCA 1 cut(s) 1002
Fnu4HI GCNGC 4 cut(s) 231, 738, 946, 1036
FokI GGATG 3 cut(s) 236, 418, 519
Fsp4HI GCNGC 4 cut(s) 231, 738, 946, 1036
FspBI CTAG 4 cut(s) 12, 326, 507, 1031
GlaI GCGC 1 cut(s) 29
GluI GCNGC 4 cut(s) 231, 738, 946, 1036
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 4 cut(s) 135, 527, 905, 1166
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 5 cut(s) 250, 792, 802, 968, 976
HindII GTYRAC 5 cut(s) 250, 792, 802, 968, 976
HindIII AAGCTT 4 cut(s) 102, 728, 848, 1055
HinfI GANTC 5 cut(s) 322, 365, 451, 503, 858
HpaI GTTAAC 1 cut(s) 802
HphI GGTGA 3 cut(s) 390, 661, 1261
Hpy188I TCNGA 3 cut(s) 370, 450, 1108
Hpy188III TCNNGA 5 cut(s) 467, 500, 536, 613, 1021
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 5 cut(s) 243, 354, 438, 689, 982
HpyCH4IV ACGT 4 cut(s) 21, 318, 607, 869
HpyCH4V TGCA 8 cut(s) 233, 284, 300, 764, 878, 945, 1078, 1211
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 7 cut(s) 272, 392, 519, 611, 837, 962, 1124
HpySE526I ACGT 4 cut(s) 21, 318, 607, 869
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 28
KpnI GGTACC 2 cut(s) 291, 1257
Ksp22I TGATCA 1 cut(s) 1002
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 812, 1002, 1192
LguI GCTCTTC 1 cut(s) 465
Lsp1109I GCAGC 4 cut(s) 217, 749, 957, 1047
LweI GCATC 3 cut(s) 322, 559, 865
MaeI CTAG 4 cut(s) 12, 326, 507, 1031
MaeII ACGT 4 cut(s) 21, 318, 607, 869
MaeIII GTNAC 2 cut(s) 396, 695
MalI GATC 3 cut(s) 814, 1004, 1194
MboI GATC 3 cut(s) 812, 1002, 1192
MboII GAAGA 5 cut(s) 482, 596, 610, 692, 998
MflI RGATCY 2 cut(s) 812, 1192
MhlI GDGCHC 1 cut(s) 1080
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 4 cut(s) 119, 200, 267, 554
MluNI TGGCCA 1 cut(s) 1166
MnlI CCTC 6 cut(s) 126, 220, 296, 387, 402, 1081
Mox20I TGGCCA 1 cut(s) 1166
MroXI GAANNNNTTC 3 cut(s) 242, 543, 635
MscI TGGCCA 1 cut(s) 1166
MseI TTAA 4 cut(s) 431, 732, 801, 1062
Msp20I TGGCCA 1 cut(s) 1166
MspCI CTTAAG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 1235
MvaI CCWGG 1 cut(s) 1235
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 3 cut(s) 812, 1002, 1192
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 75, 289, 1255
NmuCI GTSAC 1 cut(s) 396
NspV TTCGAA 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 1017
PdmI GAANNNNTTC 3 cut(s) 242, 543, 635
PfeI GAWTC 5 cut(s) 322, 365, 451, 503, 858
PkrI GCNGC 4 cut(s) 232, 739, 947, 1037
Psp6I CCWGG 1 cut(s) 1233
PspEI GGTNACC 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 1233
PspN4I GGNNCC 3 cut(s) 75, 289, 1255
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 812, 1192
RsaI GTAC 3 cut(s) 289, 667, 1255
RsaNI GTAC 3 cut(s) 288, 666, 1254
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 4 cut(s) 431, 732, 801, 1062
SatI GCNGC 4 cut(s) 231, 738, 946, 1036
Sau3AI GATC 3 cut(s) 812, 1002, 1192
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 1235
SduI GDGCHC 1 cut(s) 1080
SfaNI GCATC 3 cut(s) 322, 559, 865
SfcI CTRYAG 3 cut(s) 67, 417, 808
SfuI TTCGAA 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 119, 200, 267, 554
SsiI CCGC 1 cut(s) 88
SspI AATATT 2 cut(s) 191, 898
SspMI CTAG 4 cut(s) 12, 326, 507, 1031
StyD4I CCNGG 1 cut(s) 1233
StyI CCWWGG 2 cut(s) 401, 906
TaaI ACNGT 5 cut(s) 243, 354, 438, 689, 982
TaiI ACGT 4 cut(s) 24, 321, 610, 872
TaqI TCGA 4 cut(s) 128, 260, 294, 1020
TasI AATT 4 cut(s) 119, 200, 267, 554
TatI WGTACW 1 cut(s) 665
TfiI GAWTC 5 cut(s) 322, 365, 451, 503, 858
Tru1I TTAA 4 cut(s) 431, 732, 801, 1062
Tru9I TTAA 4 cut(s) 431, 732, 801, 1062
TscAI CASTG 5 cut(s) 37, 240, 646, 985, 1213
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 4 cut(s) 230, 737, 945, 1035
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 17, 96, 331
TspGWI ACGGA 1 cut(s) 1026
TspRI CASTG 5 cut(s) 37, 240, 646, 985, 1213
Vha464I CTTAAG 1 cut(s) 731
VneI GTGCAC 1 cut(s) 1076
XapI RAATTY 2 cut(s) 200, 267
XmnI GAANNNNTTC 3 cut(s) 242, 543, 635
XspI CTAG 4 cut(s) 12, 326, 507, 1031
ZraI GACGTC 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.