Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

29938408 .. 29939692

Gene Structure 1285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAATGAAATAAGTGTTCACGTTGAGCGCACTGAACCAGAACCAGTCTTGGACGAGTGGTGTATCTACAGGGTTCCCAGCAAACTCCGCAATGTAAATAAAGCATCTTACACTCCTCAATTACTTTCGATAGGCCCTTTCCACTACGGCAGTCCAAAACTGAAGGACATGGAAAGCCGTAAACAGAAATATTATGAGAAATTTCTCAAACACTGTTCAAAGGATGAGGCTGCACTGAAACGGTTCGTCAACCAACATTTGGACAGCATTCTTAGTTGTTATGCAGGTACCATTGAGTGCAGAGGCAACATTATCAACGTGATTCTAGTTGATGCTTGCTTCATCATTGAACTGTTTATGACAGACTCTGAAACAGAAAATCATCACATACTGAGTCGTGATTCTATTGTGGAACCGGACGGCAATCTCAATCCTGAACCTGTTCAGCATCAATTTCTAACCCTTGCCTACAAAGTGACAGATGACTGTGTTAGGAACCAAAAGAAATGTAAATATGATGTAAGAAAGCTCAAGGCAGCCGGGATAAAGTTTACACATCTTGCAGAACCCTTTGTCATAGAGCGTTTGTCAACAGGGGTTAACAGCTATATATCCAAGTTAGCAGGTCTTACAACTAAGGAGTTGAGGCTTACAAGATTCTGGGCAACGTATGATGCAGAAAGCGTCATAAGAAACATTATGGCCTTGGAACAGCTCATCTACCCAAAAAAGGCTTATATTTGCAGCTATTTTTTGCTACTTAGTCAACTTGTCAACACTGTGGAAGACATAGATTTGCTGATCAAGGACGGAGTGGTCGAGAACTTACTAGGCAGCAACAAATCGGTGGAAAAGCTTATTAACTCATTCTGCGTGCACATTGTGGAGGAAATATCCTGCTATTCGGATATCTATGACCAGCTTAATGAGCACTATGATACGAGTTTAGGCAATCGCCGTATGGCAACCCTGAAACAAGTTTACTTCAAGGATCTTTGGACAGGCAGTGCAACTATACTTGGACTGGTTGTCCTGGTTTTCTCAATCATTGCTACCATCAAGTCGCTCACCTCTCATAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

361

Amino Acids

41.3

Weight (kDa)

6.83

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	22 - 129	4.3e-27	Plant protein of unknown function
DUF247	PF03140	169 - 347	2.3e-33	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	815
Acc36I	ACCTGC	2 cut(s)	275, 614
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	259
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	999
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	259, 730
AgsI	TTSAA	3 cut(s)	219, 350, 988
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	1032
AluBI	AGCT	6 cut(s)	529, 606, 715, 747, 856, 922
AluI	AGCT	6 cut(s)	529, 606, 715, 747, 856, 922
Alw21I	GWGCWC	2 cut(s)	879, 933
Alw44I	GTGCAC	1 cut(s)	875
AlwI	GGATC	1 cut(s)	999
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	133, 702
ApaLI	GTGCAC	1 cut(s)	875
ApeKI	GCWGC	4 cut(s)	230, 536, 744, 834
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	2 cut(s)	242, 441
Asp718I	GGTACC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	879
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	879, 933
BbvI	GCAGC	4 cut(s)	217, 548, 756, 846
BccI	CCATC	1 cut(s)	1064
BceAI	ACGGC	4 cut(s)	162, 163, 436, 942
BciT130I	CCWGG	1 cut(s)	1034
BclI	TGATCA	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	541
BfaI	CTAG	2 cut(s)	326, 830
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	2 cut(s)	275, 614
BisI	GCNGC	4 cut(s)	231, 537, 745, 835
BlsI	GCNGC	4 cut(s)	232, 538, 746, 836
Bme1390I	CCNGG	2 cut(s)	541, 1034
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	4 cut(s)	75, 289, 414, 497
BmrFI	CCNGG	2 cut(s)	541, 1034
BmsI	GCATC	4 cut(s)	113, 322, 457, 664
BpiI	GAAGAC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 730
Bse1I	ACTGG	2 cut(s)	44, 1029
Bse3DI	GCAATG	2 cut(s)	97, 1047
BseBI	CCWGG	1 cut(s)	1034
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	259, 730
BseMI	GCAATG	2 cut(s)	97, 1047
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	44, 1029
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	4 cut(s)	217, 548, 756, 846
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	2 cut(s)	216, 319
BshFI	GGCC	2 cut(s)	135, 704
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	879, 933
BsiSI	CCGG	2 cut(s)	416, 540
BslI	CCNNNNNNNGG	2 cut(s)	259, 730
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	135, 704
Bsp1286I	GDGCHC	2 cut(s)	879, 933
Bsp143I	GATC	2 cut(s)	801, 991
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	135, 704
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	4 cut(s)	75, 289, 414, 497
BspMI	ACCTGC	2 cut(s)	275, 614
BspPI	GGATC	1 cut(s)	999
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	97, 1047
BsrI	ACTGG	2 cut(s)	44, 1029
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	2 cut(s)	801, 991
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	1034
Bst4CI	ACNGT	5 cut(s)	215, 243, 354, 488, 781
BstC8I	GCNNGC	2 cut(s)	337, 875
BstDEI	CTNAG	4 cut(s)	272, 392, 636, 761
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	804, 994
BstMBI	GATC	2 cut(s)	801, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 928
BstNI	CCWGG	1 cut(s)	1034
BstSCI	CCNGG	2 cut(s)	539, 1032
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	879
BstV1I	GCAGC	4 cut(s)	217, 548, 756, 846
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	991
BsuRI	GGCC	2 cut(s)	135, 704
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	5 cut(s)	30, 211, 233, 777, 1012
BveI	ACCTGC	2 cut(s)	275, 614
Cac8I	GCNNGC	2 cut(s)	337, 875
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	4 cut(s)	272, 392, 636, 761
DpnI	GATC	2 cut(s)	803, 993
DpnII	GATC	2 cut(s)	801, 991
DraIII	CACNNNGTG	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	815
DriI	GACNNNNNGTC	1 cut(s)	1028
DseDI	GACNNNNNNGTC	1 cut(s)	815
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	1032
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	1 cut(s)	172
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	4 cut(s)	231, 537, 745, 835
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	231, 537, 745, 835
FspBI	CTAG	2 cut(s)	326, 830
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	231, 537, 745, 835
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	135, 704
HapII	CCGG	2 cut(s)	416, 540
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	5 cut(s)	250, 591, 601, 767, 775
HindII	GTYRAC	5 cut(s)	250, 591, 601, 767, 775
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	5 cut(s)	322, 365, 394, 401, 657
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	2 cut(s)	416, 540
HphI	GGTGA	1 cut(s)	1060
Hpy188I	TCNGA	2 cut(s)	370, 907
Hpy188III	TCNNGA	3 cut(s)	398, 434, 820
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	5 cut(s)	215, 243, 354, 488, 781
HpyCH4IV	ACGT	3 cut(s)	21, 318, 668
HpyCH4V	TGCA	8 cut(s)	233, 284, 300, 563, 677, 744, 877, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 928
HpyF3I	CTNAG	4 cut(s)	272, 392, 636, 761
HpySE526I	ACGT	3 cut(s)	21, 318, 668
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	801
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	801, 991
Lsp1109I	GCAGC	4 cut(s)	217, 548, 756, 846
LweI	GCATC	4 cut(s)	113, 322, 457, 664
MaeI	CTAG	2 cut(s)	326, 830
MaeII	ACGT	3 cut(s)	21, 318, 668
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	803, 993
MboI	GATC	2 cut(s)	801, 991
MboII	GAAGA	1 cut(s)	797
MflI	RGATCY	1 cut(s)	991
MhlI	GDGCHC	2 cut(s)	879, 933
MluCI	AATT	3 cut(s)	119, 200, 452
MlyI	GAGTC	2 cut(s)	359, 403
MnlI	CCTC	6 cut(s)	126, 220, 296, 639, 880, 1081
MroXI	GAANNNNTTC	2 cut(s)	242, 441
MseI	TTAA	3 cut(s)	600, 861, 924
MspI	CCGG	2 cut(s)	416, 540
MspR9I	CCNGG	2 cut(s)	541, 1034
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	2 cut(s)	87, 928
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	2 cut(s)	801, 991
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	75, 289, 414, 497
NmuCI	GTSAC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	242, 441
PfeI	GAWTC	3 cut(s)	322, 401, 657
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	232, 538, 746, 836
PleI	GAGTC	2 cut(s)	359, 402
PpsI	GAGTC	2 cut(s)	359, 402
Psp6I	CCWGG	1 cut(s)	1032
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	1032
PspN4I	GGNNCC	4 cut(s)	75, 289, 414, 497
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	991
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	600, 861, 924
SatI	GCNGC	4 cut(s)	231, 537, 745, 835
Sau3AI	GATC	2 cut(s)	801, 991
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	359, 403
ScrFI	CCNGG	2 cut(s)	541, 1034
SduI	GDGCHC	2 cut(s)	879, 933
SfaNI	GCATC	4 cut(s)	113, 322, 457, 664
SfcI	CTRYAG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	119, 200, 452
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	326, 830
StyD4I	CCNGG	2 cut(s)	539, 1032
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	5 cut(s)	215, 243, 354, 488, 781
TaiI	ACGT	3 cut(s)	24, 321, 671
TaqI	TCGA	2 cut(s)	128, 819
TasI	AATT	3 cut(s)	119, 200, 452
TfiI	GAWTC	3 cut(s)	322, 401, 657
Tru1I	TTAA	3 cut(s)	600, 861, 924
Tru9I	TTAA	3 cut(s)	600, 861, 924
TscAI	CASTG	5 cut(s)	37, 218, 240, 784, 1012
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	4 cut(s)	230, 536, 744, 834
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 21, 331
TspGWI	ACGGA	1 cut(s)	825
TspRI	CASTG	5 cut(s)	37, 218, 240, 784, 1012
Van91I	CCANNNNNTGG	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	875
XapI	RAATTY	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	242, 441
XspI	CTAG	2 cut(s)	326, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.