Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Reverse (-)

25128942 .. 25131480

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0182300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGAACCCAAAACCCAATTCCTACAAAATCACAACAACAAGAAAAGGAAGGCCCACAGTTCGATTTGCTAGCCTCACCCAAGAACGTTTATATCTTCTGCTTGGCCTTTCGAATAGTAAATGCTCTGTTGGTTCAGACCTATTTCAACTCAGATGAGCACTGGCAAGCTCTTGAAGTTGCTCACCGCATCACTTTTGGGTTTGGCCATTTGACGTGGGAGTGGAAGAAGGGGATTCGGAGCTACTTGCATCCTTTGCTCTTTGCTTTCCTTTACAAAGTGCTTGCCTTGTTAGGTCTTGATACTCCGTGGTTCATGGTCAAGGCTCCTCGGCTATTCCAGTCCCTATTCTCTGCATTTGGTGATTTATACCTGTACAAACTCTCTGTCATCCTCTTTGGCGACCAGGTTGCAAAATGGGCTCTTTTTTCCCAATTGACAAATTGGTTTATGTTTTTCTGTCTCACTCGTACATTATCGAATAGTCTGGAGACTGTTCTTACCATTGTGAGCTTGTACTACTGGCCCTGTATCAGGCCTTCTTCCAGCAAACTTCCGTTGGAATCTAGAAAGTGGGGTCTGCTTATTGCTGCATTAGCTTGTGCTATTCGACCAACAAGTGCCATCATATGGCTTTATGTTGGGCTCCTTGAGCTATTTGTGTCACGCGATAAACTCAGATTCATATTTTTGGAGGTGGCTCCTATTGGGGTCCTGGTGCTTGGGCTTACATTTTTAATAGATCGATTGATGTACGACTCATGGGTCTTTTTTGACATTGTCAAGAGGAACTCAAAAGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

268

Amino Acids

31.16

Weight (kDa)

9.41

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	30 - 257	1.7e-68	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	187
AclI	AACGTT	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	4 cut(s)	377, 472, 518, 755
AfiI	CCNNNNNNNGG	2 cut(s)	534, 630
AgsI	TTSAA	2 cut(s)	148, 176
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	405, 714
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	6 cut(s)	170, 243, 513, 599, 655, 800
AluI	AGCT	6 cut(s)	170, 243, 513, 599, 655, 800
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	467, 485
AoxI	GGCC	5 cut(s)	52, 105, 205, 524, 536
ApeKI	GCWGC	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspS9I	GGNCC	3 cut(s)	53, 525, 712
AsuHPI	GGTGA	3 cut(s)	69, 176, 374
AsuII	TTCGAA	1 cut(s)	112
AsuNHI	GCTAGC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	424, 648
BarI	GAAGNNNNNNTAC	2 cut(s)	523, 555
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	407, 716
BcoDI	GTCTC	2 cut(s)	467, 485
BfaI	CTAG	3 cut(s)	71, 567, 805
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	407, 716
Bme18I	GGWCC	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	53, 525, 712
BmiI	GGNNCC	4 cut(s)	327, 647, 702, 713
BmrFI	CCNGG	2 cut(s)	407, 716
BmsI	GCATC	2 cut(s)	198, 259
BmtI	GCTAGC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	308, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 630
Bse1I	ACTGG	3 cut(s)	167, 340, 527
BseBI	CCWGG	2 cut(s)	407, 716
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	2 cut(s)	308, 329
BseGI	GGATG	2 cut(s)	250, 390
BseLI	CCNNNNNNNGG	2 cut(s)	534, 630
BseMII	CTCAG	2 cut(s)	165, 691
BseNI	ACTGG	3 cut(s)	167, 340, 527
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	5 cut(s)	54, 107, 207, 526, 538
BshVI	ATCGAT	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	534, 630
BsmAI	GTCTC	2 cut(s)	467, 485
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	5 cut(s)	54, 107, 207, 526, 538
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	162, 424, 648
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	742
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	5 cut(s)	54, 107, 207, 526, 538
BspCNI	CTCAG	2 cut(s)	164, 690
BspDI	ATCGAT	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	4 cut(s)	327, 647, 702, 713
BspOI	GCTAGC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	167, 340, 527
BssECI	CCNNGG	2 cut(s)	308, 329
BssMI	GATC	1 cut(s)	742
Bst2UI	CCWGG	2 cut(s)	407, 716
Bst4CI	ACNGT	2 cut(s)	60, 496
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	72, 168, 285
BstDEI	CTNAG	2 cut(s)	151, 677
BstDSI	CCRYGG	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	250, 390
BstFNI	CGCG	1 cut(s)	669
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	2 cut(s)	467, 485
BstMBI	GATC	1 cut(s)	742
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 419, 596, 652
BstNI	CCWGG	2 cut(s)	407, 716
BstSCI	CCNGG	2 cut(s)	405, 714
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	577
Bsu15I	ATCGAT	1 cut(s)	745
BsuRI	GGCC	5 cut(s)	54, 107, 207, 526, 538
BsuTUI	ATCGAT	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	308
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	250, 390
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	72, 168, 285
Cfr13I	GGNCC	3 cut(s)	53, 525, 712
ClaI	ATCGAT	1 cut(s)	745
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	4 cut(s)	376, 471, 517, 754
CviAII	CATG	2 cut(s)	316, 762
CviQI	GTAC	4 cut(s)	376, 471, 517, 754
DdeI	CTNAG	2 cut(s)	151, 677
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	2 cut(s)	424, 648
Eco47I	GGWCC	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	405, 714
EcoT38I	GRGCYC	2 cut(s)	424, 648
FaeI	CATG	2 cut(s)	319, 765
FaiI	YATR	9 cut(s)	93, 317, 370, 452, 629, 631, 639, 686, 763
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	315, 761
FauNDI	CATATG	1 cut(s)	629
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	2 cut(s)	237, 377
FriOI	GRGCYC	2 cut(s)	424, 648
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	3 cut(s)	71, 567, 805
GluI	GCNGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	5 cut(s)	54, 107, 207, 526, 538
Hin1II	CATG	2 cut(s)	319, 765
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	4 cut(s)	235, 563, 681, 758
HphI	GGTGA	3 cut(s)	69, 176, 374
Hpy188I	TCNGA	4 cut(s)	138, 154, 240, 680
Hpy188III	TCNNGA	5 cut(s)	173, 299, 488, 567, 784
HpyAV	CCTTC	3 cut(s)	44, 223, 549
HpyCH4III	ACNGT	2 cut(s)	60, 496
HpyCH4IV	ACGT	2 cut(s)	87, 215
HpyCH4V	TGCA	4 cut(s)	250, 356, 413, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 419, 596, 652
HpyF3I	CTNAG	2 cut(s)	151, 677
HpySE526I	ACGT	2 cut(s)	87, 215
Hsp92II	CATG	2 cut(s)	319, 765
Kzo9I	GATC	1 cut(s)	742
LmnI	GCTCC	4 cut(s)	240, 331, 651, 706
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	2 cut(s)	198, 259
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	3 cut(s)	71, 567, 805
MaeII	ACGT	2 cut(s)	87, 215
MaeIII	GTNAC	1 cut(s)	663
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	3 cut(s)	88, 238, 534
MfeI	CAATTG	1 cut(s)	434
MhlI	GDGCHC	3 cut(s)	162, 424, 648
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	3 cut(s)	18, 434, 442
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	5 cut(s)	85, 339, 404, 688, 780
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	737
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	407, 716
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	2 cut(s)	407, 716
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	256, 419, 596, 652
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	1 cut(s)	742
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	319, 765
NlaIV	GGNNCC	4 cut(s)	327, 647, 702, 713
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	663
NspV	TTCGAA	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	235, 563, 681
PflFI	GACNNNGTC	1 cut(s)	779
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PpuMI	RGGWCCY	1 cut(s)	712
Psp1406I	AACGTT	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	405, 714
PspGI	CCWGG	2 cut(s)	405, 714
PspN4I	GGNNCC	4 cut(s)	327, 647, 702, 713
PspPI	GGNCC	3 cut(s)	53, 525, 712
PspPPI	RGGWCCY	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	779
RsaI	GTAC	4 cut(s)	377, 472, 518, 755
RsaNI	GTAC	4 cut(s)	376, 471, 517, 754
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	3 cut(s)	53, 525, 712
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	407, 716
SduI	GDGCHC	3 cut(s)	162, 424, 648
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	198, 259
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	1 cut(s)	712
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	18, 434, 442
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	3 cut(s)	71, 567, 805
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	405, 714
TaaI	ACNGT	2 cut(s)	60, 496
TaiI	ACGT	2 cut(s)	90, 218
TaqI	TCGA	5 cut(s)	63, 112, 479, 610, 745
TasI	AATT	3 cut(s)	18, 434, 442
TatI	WGTACW	2 cut(s)	375, 516
TfiI	GAWTC	3 cut(s)	235, 563, 681
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	2 cut(s)	304, 673
TspGWI	ACGGA	2 cut(s)	297, 546
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	779
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	1 cut(s)	712
XagI	CCTNNNNNAGG	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	566
XspI	CTAG	3 cut(s)	71, 567, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.