RchiOBHm_Chr1g0346641

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000821
Physical Location & Seq
Forward (+)
39110415 .. 39111134
720 bp
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UTR
Exon/CDS
Intron
PRQ57289

Sequence Viewer

Length: 720 bp
ATGGAGAACAACAAAAGAATATATTGTGAGAATTTCTGTGCAGGTTCTTTGAAGAGTATAGATGAACTAAAACTTTACATCAAAAGTCGTCTACAAGACATTGTTGGTTGTTATGCAGGGACCATCAATCAGCCAGACAGCGAACTTGTGGACCTGATTCTAGTGGATGCTTGTTTCATCATTGAACTTTTTTTGGTGAACTCTGAAGAAACAACTGAAAATTATTATCACTTATTCAGATCACCATGGCTGAGGAAAGCTCTAGAGCAGGATCTGATACTGTTTGAAAATCAGCTTCCTTATTCTCTTCTTCAAGACCTATACGATTTTTCCATGCCTGCCTCTTGCTTTAATCCCCCAAATGAAGTAAAACTACCAAAACAGCCCCATATCTGTCATGAACAGCGATACTGTTTGTCTTGCTTCCATCACTGCTTGCGTTGCTTCCGTAGGACCCCTCCTCGTGATTATTCTATAGGGGTTGCCAACGCAGAACCTGTTCATCCCTTTCTTAAGCGTACCTGTGAATTCTTCAAAGAGTACAGCAAGGGAAGATTTGTCAGGAATGGAGTATCACCAAAACATTTTACTGATTTGGTAAGACACTTTCTTTGTCCAGAAGAAGAAATGACCTGGGTAGATATTCGTCTTATCCCTGTCAAAACTATATATGATGCAAGAAAGCTGAAGGAGGCAGGGGGTAAACTTCAGGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

239

Amino Acids

28.0

Weight (kDa)

6.7

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 234 9.2e-27 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 91
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 2 cut(s) 31, 527
AcuI CTGAAG 3 cut(s) 225, 692, 707
AfaI GTAC 2 cut(s) 520, 542
AflII CTTAAG 1 cut(s) 512
AgsI TTSAA 5 cut(s) 52, 185, 287, 314, 535
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 3 cut(s) 260, 295, 685
AluI AGCT 3 cut(s) 260, 295, 685
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 2 cut(s) 274, 497
AoxI GGCC 1 cut(s) 711
ApoI RAATTY 2 cut(s) 31, 527
ArsI GACNNNNNNTTYG 2 cut(s) 594, 626
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 120, 151, 453
AsuHPI GGTGA 3 cut(s) 208, 234, 567
AvaII GGWCC 3 cut(s) 120, 151, 453
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BauI CACGAG 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 131, 435
BciT130I CCWGG 1 cut(s) 634
BfaI CTAG 2 cut(s) 161, 263
BfmI CTRYAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 3 cut(s) 120, 151, 453
BmgT120I GGNCC 3 cut(s) 120, 151, 453
BmiI GGNNCC 2 cut(s) 121, 455
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 2 cut(s) 157, 664
BplI GAGNNNNNCTC 2 cut(s) 244, 276
Bpu10I CCTNAGC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 245, 633
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 245, 633
BseGI GGATG 2 cut(s) 172, 502
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 713
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 713
Bsp143I GATC 2 cut(s) 239, 271
Bsp19I CCATGG 1 cut(s) 245
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 121, 455
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 512
BssECI CCNNGG 2 cut(s) 245, 633
BssMI GATC 2 cut(s) 239, 271
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 2 cut(s) 282, 413
Bst6I CTCTTC 2 cut(s) 47, 312
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 339, 437
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 172, 502
BstKTI GATC 2 cut(s) 242, 274
BstMBI GATC 2 cut(s) 239, 271
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 172, 502
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 339, 437
CaiI CAGNNNCTG 2 cut(s) 274, 497
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 120, 151, 453
Csp6I GTAC 2 cut(s) 519, 541
CviAII CATG 3 cut(s) 246, 334, 398
CviJI RGCY 7 cut(s) 133, 250, 260, 295, 385, 685, 713
CviKI_1 RGCY 7 cut(s) 133, 250, 260, 295, 385, 685, 713
CviQI GTAC 2 cut(s) 519, 541
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 241, 273
DpnII GATC 2 cut(s) 239, 271
Eam1104I CTCTTC 2 cut(s) 47, 312
EarI CTCTTC 2 cut(s) 47, 312
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 3 cut(s) 120, 151, 453
Eco57I CTGAAG 3 cut(s) 225, 692, 707
EcoO109I RGGNCCY 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 3 cut(s) 249, 337, 401
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 245, 333, 397
FblI GTMKAC 1 cut(s) 91
FokI GGATG 2 cut(s) 179, 489
FspBI CTAG 2 cut(s) 161, 263
HaeIII GGCC 1 cut(s) 713
Hin1II CATG 3 cut(s) 249, 337, 401
HinfI GANTC 1 cut(s) 157
HphI GGTGA 3 cut(s) 208, 234, 567
Hpy166II GTNNAC 4 cut(s) 92, 151, 199, 704
Hpy188I TCNGA 3 cut(s) 205, 239, 276
Hpy188III TCNNGA 6 cut(s) 263, 314, 398, 464, 562, 617
Hpy8I GTNNAC 4 cut(s) 92, 151, 199, 704
HpyAV CCTTC 1 cut(s) 682
HpyCH4III ACNGT 2 cut(s) 282, 413
HpyCH4V TGCA 3 cut(s) 41, 116, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 3 cut(s) 249, 337, 401
Kzo9I GATC 2 cut(s) 239, 271
LweI GCATC 2 cut(s) 157, 664
MaeI CTAG 2 cut(s) 161, 263
MalI GATC 2 cut(s) 241, 273
MboI GATC 2 cut(s) 239, 271
MboII GAAGA 8 cut(s) 64, 218, 299, 302, 523, 564, 632, 635
MflI RGATCY 1 cut(s) 271
MluCI AATT 3 cut(s) 31, 220, 527
MnlI CCTC 5 cut(s) 246, 352, 468, 471, 685
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 351, 513, 718
MspCI CTTAAG 1 cut(s) 512
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 441
NcoI CCATGG 1 cut(s) 245
NdeII GATC 2 cut(s) 239, 271
NlaIII CATG 3 cut(s) 249, 337, 401
NlaIV GGNNCC 2 cut(s) 121, 455
PagI TCATGA 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 121, 455
PspPI GGNCC 3 cut(s) 120, 151, 453
PspPPI RGGWCCY 1 cut(s) 453
PstNI CAGNNNCTG 2 cut(s) 274, 497
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 520, 542
RsaNI GTAC 2 cut(s) 519, 541
SaqAI TTAA 3 cut(s) 351, 513, 718
Sau3AI GATC 2 cut(s) 239, 271
Sau96I GGNCC 3 cut(s) 120, 151, 453
ScrFI CCNGG 1 cut(s) 634
SetI ASST 9 cut(s) 46, 156, 262, 297, 321, 499, 524, 635, 687
SfaNI GCATC 2 cut(s) 157, 664
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 3 cut(s) 120, 151, 453
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 3 cut(s) 31, 220, 527
SspMI CTAG 2 cut(s) 161, 263
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 282, 413
TasI AATT 3 cut(s) 31, 220, 527
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 3 cut(s) 351, 513, 718
Tru9I TTAA 3 cut(s) 351, 513, 718
TscAI CASTG 1 cut(s) 437
TspDTI ATGAA 5 cut(s) 78, 166, 378, 414, 491
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 3 cut(s) 120, 151, 453
XapI RAATTY 2 cut(s) 31, 527
XbaI TCTAGA 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 161, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.