Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

62087394 .. 62088221

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTAGAACCTCAGAGTGAACAAAGAGAGAATGCACCGGTATTGTTCCTGCAGGAATGGTGTATCTATAGGGTTCCCAGCCAGCTCCGCAATGTAGATGAAGCAGCATACACTCCTCAAACACTTTCGATAGGGCCTTTCCACCGTGGAAATCCAAAACTGAGGGACATGGAGGCCCATAAGAACAAATATTATGAGTTGTTTTGCAGACGTTCTTCGAAAAGTAAGGACGAACTAAGGAGCTTCATGATGGATCATCGAGAAACAATTCTAAATTGTTATGCAGGTACCTTTAAATGTGAGATCGACTTTTTGAACCTCATCCTAGTTGACTCCTGCTTCATAATTGAACTCTTTTTGACTAATTCTGAACAAGAACAACATATTGCAAATTATTATATACTGAGATCACCGTGGCTGAGGAAAACGGTGGAGAGGGACCTGATACTGTTGGAAAATCAGCTTCCTTATTTTCTTCTTCAAAAGCTATATGACTTTGCCATACCCACCTTTTCCAATGGCCATCTTGGCAATGGAGACCAAGCACAAGTTGGGGGACATGTCCATAAAGATAGCTCCAACAGTCAGCAATGCTGCTTCCCTTGCTTCCGGCCCGGTGATTTTCAAGAGAACTCCATCCGATCTGAACCTATTCAACATGGCTTTCTTGAACTTACCTGTAAGTTTTTTAAGGCATACACTAAGGGAAAATCTGTCGGGAATGGATTTGAGCCAAAACACTTCACTGATTTGGTTAGACACTTTCTATGCCCGTGCAAGGAGCTGTTGTGGGTCAAAAATTATGATCAGCCCGTCAAAATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

276

Amino Acids

32.22

Weight (kDa)

7.11

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	22 - 258	3e-47	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	520
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	559
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	6 cut(s)	316, 350, 482, 626, 656, 671
AluBI	AGCT	6 cut(s)	85, 243, 463, 487, 576, 784
AluI	AGCT	6 cut(s)	85, 243, 463, 487, 576, 784
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	4 cut(s)	134, 174, 520, 611
ApeKI	GCWGC	2 cut(s)	104, 594
AsiGI	ACCGGT	1 cut(s)	37
Asp700I	GAANNNNTTC	2 cut(s)	267, 651
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	4 cut(s)	134, 175, 439, 612
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	2 cut(s)	402, 629
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	116, 581
BccI	CCATC	3 cut(s)	244, 531, 644
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	2 cut(s)	50, 67
BfuAI	ACCTGC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	2 cut(s)	105, 595
BlsI	GCNGC	2 cut(s)	106, 596
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	4 cut(s)	134, 175, 439, 612
BmiI	GGNNCC	3 cut(s)	75, 289, 440
BmrFI	CCNGG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	145, 413
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse118I	RCCGGY	1 cut(s)	37
Bse3DI	GCAATG	3 cut(s)	97, 538, 596
BseDI	CCNNGG	2 cut(s)	145, 413
BseGI	GGATG	2 cut(s)	321, 636
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	3 cut(s)	97, 538, 596
BseMII	CTCAG	4 cut(s)	26, 152, 395, 410
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	116, 581
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	4 cut(s)	136, 176, 522, 613
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	38, 610, 615
BslFI	GGGAC	3 cut(s)	179, 452, 570
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	3 cut(s)	179, 452, 570
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	136, 176, 522, 613
Bso31I	GGTCTC	1 cut(s)	531
Bsp119I	TTCGAA	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	253, 303, 407, 641, 805
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	4 cut(s)	136, 176, 522, 613
BspCNI	CTCAG	4 cut(s)	25, 153, 396, 411
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	75, 289, 440
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	3 cut(s)	97, 538, 596
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	145, 413
BssMI	GATC	5 cut(s)	253, 303, 407, 641, 805
Bst4CI	ACNGT	5 cut(s)	146, 414, 430, 450, 584
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	6 cut(s)	12, 161, 236, 404, 419, 702
BstDSI	CCRYGG	2 cut(s)	145, 413
BstF5I	GGATG	2 cut(s)	321, 636
BstKTI	GATC	5 cut(s)	256, 306, 410, 644, 808
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	5 cut(s)	253, 303, 407, 641, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 528, 603
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	2 cut(s)	50, 67
BstV1I	GCAGC	2 cut(s)	116, 581
BsuRI	GGCC	4 cut(s)	136, 176, 522, 613
BtgI	CCRYGG	2 cut(s)	145, 413
BtsCI	GGATG	2 cut(s)	321, 636
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	83
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	134, 175, 439, 612
Csp6I	GTAC	1 cut(s)	288
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	4 cut(s)	169, 247, 560, 659
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	6 cut(s)	12, 161, 236, 404, 419, 702
DpnI	GATC	5 cut(s)	255, 305, 409, 643, 807
DpnII	GATC	5 cut(s)	253, 303, 407, 641, 805
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	439
EcoO109I	RGGNCCY	2 cut(s)	134, 439
FaeI	CATG	4 cut(s)	172, 250, 563, 662
FaqI	GGGAC	3 cut(s)	179, 452, 570
FatI	CATG	4 cut(s)	168, 246, 559, 658
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	2 cut(s)	105, 595
FokI	GGATG	2 cut(s)	308, 623
Fsp4HI	GCNGC	2 cut(s)	105, 595
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	105, 595
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	136, 176, 522, 613
HapII	CCGG	3 cut(s)	38, 610, 615
Hin1II	CATG	4 cut(s)	172, 250, 563, 662
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	3 cut(s)	38, 610, 615
HphI	GGTGA	2 cut(s)	402, 629
Hpy166II	GTNNAC	2 cut(s)	20, 331
Hpy188I	TCNGA	4 cut(s)	15, 370, 641, 646
Hpy188III	TCNNGA	5 cut(s)	247, 260, 626, 668, 718
Hpy8I	GTNNAC	2 cut(s)	20, 331
HpyCH4III	ACNGT	5 cut(s)	146, 414, 430, 450, 584
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	6 cut(s)	35, 52, 207, 284, 389, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 528, 603
HpyF3I	CTNAG	6 cut(s)	12, 161, 236, 404, 419, 702
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	172, 250, 563, 662
KpnI	GGTACC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	253, 303, 407, 641, 805
LmnI	GCTCC	4 cut(s)	90, 240, 581, 781
Lsp1109I	GCAGC	2 cut(s)	116, 581
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	211
MalI	GATC	5 cut(s)	255, 305, 409, 643, 807
MboI	GATC	5 cut(s)	253, 303, 407, 641, 805
MboII	GAAGA	3 cut(s)	207, 467, 470
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	7 cut(s)	267, 274, 345, 364, 391, 799, 819
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	432, 603
MnlI	CCTC	7 cut(s)	21, 126, 156, 166, 329, 414, 429
Mox20I	TGGCCA	1 cut(s)	522
MroXI	GAANNNNTTC	2 cut(s)	267, 651
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	3 cut(s)	294, 690, 822
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	3 cut(s)	38, 610, 615
MspR9I	CCNGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	87, 528, 603
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	5 cut(s)	253, 303, 407, 641, 805
NlaIII	CATG	4 cut(s)	172, 250, 563, 662
NlaIV	GGNNCC	3 cut(s)	75, 289, 440
NspI	RCATGY	1 cut(s)	563
NspV	TTCGAA	1 cut(s)	218
PagI	TCATGA	1 cut(s)	246
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	267, 651
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	106, 596
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	439
PscI	ACATGT	1 cut(s)	559
Psp5II	RGGWCCY	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	75, 289, 440
PspPI	GGNCC	4 cut(s)	134, 175, 439, 612
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	294, 690, 822
SatI	GCNGC	2 cut(s)	105, 595
Sau3AI	GATC	5 cut(s)	253, 303, 407, 641, 805
Sau96I	GGNCC	4 cut(s)	134, 175, 439, 612
SbfI	CCTGCAGG	1 cut(s)	54
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	615
SdaI	CCTGCAGG	1 cut(s)	54
SfcI	CTRYAG	2 cut(s)	50, 67
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	1 cut(s)	439
Sse8387I	CCTGCAGG	1 cut(s)	54
Sse9I	AATT	7 cut(s)	267, 274, 345, 364, 391, 799, 819
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	5 cut(s)	146, 414, 430, 450, 584
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	128, 218, 259, 306
TasI	AATT	7 cut(s)	267, 274, 345, 364, 391, 799, 819
Tru1I	TTAA	3 cut(s)	294, 690, 822
Tru9I	TTAA	3 cut(s)	294, 690, 822
TscAI	CASTG	1 cut(s)	751
TseI	GCWGC	2 cut(s)	104, 594
TspDTI	ATGAA	3 cut(s)	114, 235, 331
TspRI	CASTG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	2 cut(s)	530, 548
XmnI	GAANNNNTTC	2 cut(s)	267, 651
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.