Prupe.2G125100_v2.0.a1

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
18156986 .. 18160146
3161 bp
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UTR
Exon/CDS
Intron
Prupe.2G125100.1

Sequence Viewer

Length: 1539 bp
ATGGTGGTTGACGAGAATGCGGACGACAAGAGTCCAAAGCATAACCCTAACCATGATGCCGAACATACTCCCCCCTTAAAATGTCTTAGTCTCGGCGGCAGAAGGACAAAGACTACGTCACAAATTACTGAGAAAACAGAAAATGAAGAAGAATGCCAGGTACGAGTCTTGGACAAGCCAGACAAGTGGTGTATCTATAGGGTTCCCAGTAAACTCCGCAAAGTAAATGAAGCAGCATACACTCCGCAATTACTATCAATTGGCCCTTTCCACCATGGCAAACCAGAACTCAAGGACATGGAGACCCATAAAAAGATATATTATGAGAATTTTCTTGCACGTTTTAAGAAGAGTGACGATGAACTAAAGCAATTCATCAAGACTCGCCAAGAAAATATTCTTCGTTGTTACGCAGGGACCATTGAGCTCAACAAAGACTTTGAAGAGATAATTGCCGTTGATGCGTGCTTCATCATTGAGCTATTTTTAATGAACTTCAACGATCCAAAAAATCATGAAAATGATTATATATTGAGATCACCATGGCTGAGGAAAGCTGTAGAGCAGGACTTGATACTGTTTGAAAATCAGCTTCCTTATTCTCTTCTTCAAGAACTATATCAGAACTTTGCTGTGCCTCCCTCTTCCAATTTCCAACCTCGGAAAGAAGTACAAGAACAGGCTGATAGACAGAGCAGTACCAATCATGACTTACCGCACTGCTCGCCTTGCTGCCGGCATTGCTTGCCTTGCTGCTGGTGGATTCCTTCCAAGGATCATTCCATAGAGATTGTCCAAGTTGAACCTGATAATGATGATCCCCTGCTTAAGCTTACCTATGAGTTCTTCAAAGATTATAGTAGGGGAAAATCCGTCAAGAATGGAGTAAGACCGAAACATTTCACCGATTTGGTTAGGCATTTTCTACGTCCTGACAAAGAAATGGTTTTTAAACATAGTAGTACTCCAATCAAAAATATATATGCTGCAAGGAAGCTGAAGGCATCAGGGGTGAAATTTAGGCCACTTAAAGATGGCCACTTTATCATAGAAAAAGACGAGGCCACTAAATGTAAGCTCAACTTAGCGTGTTTCAGAAATATGGACTTGAAGCTTACACAATTTTGTGTCAAGGATGAGACAGAATGCGTTATTCGAAACATCATGGCCTTGGAGCAGTTTTTATACCCAAACAAGCCTTATATCTGCAATTACTTTTTGCTTATGGATCAACTTGTGGACATTGTGGAAGATGTGGATTTGCTGGTTGAGAACAAAGTTATTCTTAACATGCTAGGCAGCAATGAAGCAGTGGCGAAACTGGTTAATAGACTTTGTGAGCAGATCATGGACGATAAATCCTGCTATTTTGATATCTGTGAGCAGCTTAATAAGCACCATGAGAATTTTTGGAACCTTCATGTCGCAACTCTGAAACGAGTTTATTTCAAGGATCTGTGGACAGGCAGTTCAACTGTAGTTGGAGTTTTCGTCCTGCTTTTCTCAATCATTGGAACCATTAAGTCTCTCATGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

59.81

Weight (kDa)

6.66

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 20, 96, 217, 245, 716
AclWI GGATC 5 cut(s) 497, 783, 812, 1236, 1461
AcoI YGGCCR 1 cut(s) 1036
AcsI RAATTY 3 cut(s) 328, 1016, 1405
AcuI CTGAAG 1 cut(s) 1019
AfaI GTAC 4 cut(s) 162, 672, 700, 964
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 9 cut(s) 443, 499, 584, 611, 803, 850, 1111, 1450, 1473
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AloI GAACNNNNNNTCC 2 cut(s) 1453, 1485
AluBI AGCT 9 cut(s) 427, 481, 557, 592, 832, 997, 1078, 1114, 1387
AluI AGCT 9 cut(s) 427, 481, 557, 592, 832, 997, 1078, 1114, 1387
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 4 cut(s) 95, 296, 1133, 1530
AlwI GGATC 5 cut(s) 497, 783, 812, 1236, 1461
AoxI GGCC 5 cut(s) 262, 1022, 1036, 1062, 1167
ApeKI GCWGC 6 cut(s) 233, 732, 753, 986, 1299, 1384
ApoI RAATTY 3 cut(s) 328, 1016, 1405
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 2 cut(s) 396, 899
AspS9I GGNCC 2 cut(s) 263, 417
AsuHPI GGTGA 3 cut(s) 531, 895, 1024
AsuII TTCGAA 1 cut(s) 1156
AvaII GGWCC 1 cut(s) 417
BalI TGGCCA 1 cut(s) 1038
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 548
BbvI GCAGC 6 cut(s) 245, 719, 740, 973, 1311, 1396
BccI CCATC 1 cut(s) 1028
BceAI ACGGC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 4 cut(s) 95, 296, 1133, 1530
BfaI CTAG 1 cut(s) 1295
BfmI CTRYAG 3 cut(s) 196, 558, 1476
BfrI CTTAAG 1 cut(s) 827
BisI GCNGC 7 cut(s) 97, 234, 733, 754, 987, 1300, 1385
BlsI GCNGC 7 cut(s) 98, 235, 734, 755, 988, 1301, 1386
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 263, 417
BmiI GGNNCC 4 cut(s) 204, 418, 1415, 1516
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 46, 451, 1013
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 1156
BpuEI CTTGAG 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 5 cut(s) 274, 542, 659, 771, 1170
BsaXI ACNNNNNCTCC 2 cut(s) 1476, 1506
Bse118I RCCGGY 1 cut(s) 735
Bse1I ACTGG 2 cut(s) 207, 1326
Bse3DI GCAATG 2 cut(s) 739, 1309
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 5 cut(s) 274, 542, 659, 771, 1170
BseGI GGATG 1 cut(s) 1141
BseMI GCAATG 2 cut(s) 739, 1309
BseMII CTCAG 2 cut(s) 120, 539
BseNI ACTGG 2 cut(s) 207, 1326
BseXI GCAGC 6 cut(s) 245, 719, 740, 973, 1311, 1396
BshFI GGCC 5 cut(s) 264, 1024, 1038, 1064, 1169
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 736
BslFI GGGAC 1 cut(s) 430
BsmAI GTCTC 4 cut(s) 95, 296, 1133, 1530
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 3 cut(s) 22, 158, 1151
BsnI GGCC 5 cut(s) 264, 1024, 1038, 1064, 1169
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 1156
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
Bsp19I CCATGG 2 cut(s) 274, 542
BspACI CCGC 5 cut(s) 20, 96, 217, 245, 716
BspANI GGCC 5 cut(s) 264, 1024, 1038, 1064, 1169
BspCNI CTCAG 2 cut(s) 121, 540
BspHI TCATGA 2 cut(s) 514, 706
BspLI GGNNCC 4 cut(s) 204, 418, 1415, 1516
BspPI GGATC 5 cut(s) 497, 783, 812, 1236, 1461
BspT104I TTCGAA 1 cut(s) 1156
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 739, 1309
BsrFI RCCGGY 1 cut(s) 735
BsrI ACTGG 2 cut(s) 207, 1326
BssAI RCCGGY 1 cut(s) 735
BssECI CCNNGG 5 cut(s) 274, 542, 659, 771, 1170
BssMI GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
BssT1I CCWWGG 4 cut(s) 274, 542, 771, 1170
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 579, 1477
Bst6I CTCTTC 4 cut(s) 344, 438, 609, 649
BstAFI CTTAAG 1 cut(s) 827
BstAPI GCANNNNNTGC 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 1156
BstC8I GCNNGC 4 cut(s) 466, 725, 737, 746
BstDEI CTNAG 4 cut(s) 86, 129, 548, 1084
BstDSI CCRYGG 2 cut(s) 274, 542
BstF5I GGATG 1 cut(s) 1141
BstKTI GATC 7 cut(s) 505, 539, 778, 820, 1231, 1347, 1456
BstMAI GTCTC 4 cut(s) 95, 296, 1133, 1530
BstMBI GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
BstMWI GCNNNNNNNGC 7 cut(s) 461, 724, 729, 741, 745, 750, 1393
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 1294
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 3 cut(s) 196, 558, 1476
BstV1I GCAGC 6 cut(s) 245, 719, 740, 973, 1311, 1396
BstX2I RGATCY 1 cut(s) 1453
BstXI CCANNNNNNTGG 1 cut(s) 186
BstYI RGATCY 1 cut(s) 1453
BsuRI GGCC 5 cut(s) 264, 1024, 1038, 1064, 1169
BtgI CCRYGG 2 cut(s) 274, 542
BtsCI GGATG 1 cut(s) 1141
BtsI GCAGTG 2 cut(s) 718, 1317
BtsIMutI CAGTG 2 cut(s) 718, 1317
Cac8I GCNNGC 4 cut(s) 466, 725, 737, 746
CciI TCATGA 2 cut(s) 514, 706
Cfr10I RCCGGY 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 263, 417
Csp6I GTAC 4 cut(s) 161, 671, 699, 963
CviQI GTAC 4 cut(s) 161, 671, 699, 963
DdeI CTNAG 4 cut(s) 86, 129, 548, 1084
DpnI GATC 7 cut(s) 504, 538, 777, 819, 1230, 1346, 1455
DpnII GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
DraI TTTAAA 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 1036
Eam1104I CTCTTC 4 cut(s) 344, 438, 609, 649
EarI CTCTTC 4 cut(s) 344, 438, 609, 649
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 4 cut(s) 274, 542, 771, 1170
Eco24I GRGCYC 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 1375
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 1019
EcoICRI GAGCTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 1375
EcoT14I CCWWGG 4 cut(s) 274, 542, 771, 1170
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 4 cut(s) 274, 542, 771, 1170
FalI AAGNNNNNCTT 4 cut(s) 1067, 1099, 1269, 1301
FaqI GGGAC 1 cut(s) 430
Fnu4HI GCNGC 7 cut(s) 97, 234, 733, 754, 987, 1300, 1385
FokI GGATG 1 cut(s) 1148
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 7 cut(s) 97, 234, 733, 754, 987, 1300, 1385
FspBI CTAG 1 cut(s) 1295
GluI GCNGC 7 cut(s) 97, 234, 733, 754, 987, 1300, 1385
HaeIII GGCC 5 cut(s) 264, 1024, 1038, 1064, 1169
HapII CCGG 1 cut(s) 736
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 2 cut(s) 830, 1112
HinfI GANTC 4 cut(s) 31, 165, 382, 763
HpaII CCGG 1 cut(s) 736
HphI GGTGA 3 cut(s) 531, 895, 1024
Hpy166II GTNNAC 4 cut(s) 10, 212, 1240, 1461
Hpy188I TCNGA 4 cut(s) 624, 663, 1097, 1434
Hpy188III TCNNGA 6 cut(s) 379, 515, 611, 707, 877, 932
Hpy8I GTNNAC 4 cut(s) 10, 212, 1240, 1461
HpyAV CCTTC 4 cut(s) 96, 777, 994, 1427
HpyCH4III ACNGT 2 cut(s) 579, 1477
HpyCH4IV ACGT 3 cut(s) 116, 340, 928
HpyCH4V TGCA 3 cut(s) 338, 989, 1209
HpyF10VI GCNNNNNNNGC 7 cut(s) 461, 724, 729, 741, 745, 750, 1393
HpyF3I CTNAG 4 cut(s) 86, 129, 548, 1084
HpySE526I ACGT 3 cut(s) 116, 340, 928
KroI GCCGGC 1 cut(s) 735
KroNI GCCGGC 1 cut(s) 737
Kzo9I GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
LmnI GCTCC 1 cut(s) 1174
Lsp1109I GCAGC 6 cut(s) 245, 719, 740, 973, 1311, 1396
LweI GCATC 3 cut(s) 46, 451, 1013
MaeI CTAG 1 cut(s) 1295
MaeII ACGT 3 cut(s) 116, 340, 928
MaeIII GTNAC 3 cut(s) 117, 353, 407
MalI GATC 7 cut(s) 504, 538, 777, 819, 1230, 1346, 1455
MboI GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 1453
MhlI GDGCHC 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 1038
MluNI TGGCCA 1 cut(s) 1038
MlyI GAGTC 3 cut(s) 40, 174, 376
MmeI TCCRAC 2 cut(s) 679, 1462
MnlI CCTC 5 cut(s) 543, 648, 652, 669, 1054
Mox20I TGGCCA 1 cut(s) 1038
MroNI GCCGGC 1 cut(s) 735
MroXI GAANNNNTTC 2 cut(s) 396, 899
MscI TGGCCA 1 cut(s) 1038
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 1038
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 3 cut(s) 22, 158, 1151
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 7 cut(s) 461, 724, 729, 741, 745, 750, 1393
NaeI GCCGGC 1 cut(s) 737
NcoI CCATGG 2 cut(s) 274, 542
NdeII GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
NgoMIV GCCGGC 1 cut(s) 735
NlaIV GGNNCC 4 cut(s) 204, 418, 1415, 1516
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 117, 353
NspI RCATGY 1 cut(s) 1294
NspV TTCGAA 1 cut(s) 1156
PagI TCATGA 2 cut(s) 514, 706
PctI GAATGC 3 cut(s) 22, 158, 1151
PdiI GCCGGC 1 cut(s) 737
PdmI GAANNNNTTC 2 cut(s) 396, 899
PfeI GAWTC 1 cut(s) 763
PflFI GACNNNGTC 1 cut(s) 115
PkrI GCNGC 7 cut(s) 98, 235, 734, 755, 988, 1301, 1386
PleI GAGTC 3 cut(s) 39, 173, 376
PpsI GAGTC 3 cut(s) 39, 173, 376
PshAI GACNNNNGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 4 cut(s) 204, 418, 1415, 1516
PspPI GGNCC 2 cut(s) 263, 417
PsuI RGATCY 1 cut(s) 1453
PsyI GACNNNGTC 1 cut(s) 115
RsaI GTAC 4 cut(s) 162, 672, 700, 964
RsaNI GTAC 4 cut(s) 161, 671, 699, 963
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 429
SatI GCNGC 7 cut(s) 97, 234, 733, 754, 987, 1300, 1385
Sau3AI GATC 7 cut(s) 502, 536, 775, 817, 1228, 1344, 1453
Sau96I GGNCC 2 cut(s) 263, 417
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 3 cut(s) 40, 174, 376
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 3 cut(s) 46, 451, 1013
SfcI CTRYAG 3 cut(s) 196, 558, 1476
SfuI TTCGAA 1 cut(s) 1156
SinI GGWCC 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 290, 827
SmoI CTYRAG 2 cut(s) 290, 827
SsiI CCGC 5 cut(s) 20, 96, 217, 245, 716
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 1295
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 4 cut(s) 274, 542, 771, 1170
TaaI ACNGT 2 cut(s) 579, 1477
TaiI ACGT 3 cut(s) 119, 343, 931
TaqI TCGA 1 cut(s) 1156
TaqII GACCGA 1 cut(s) 907
TatI WGTACW 2 cut(s) 670, 962
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 763
TscAI CASTG 2 cut(s) 725, 1317
TseFI GTSAC 2 cut(s) 117, 353
TseI GCWGC 6 cut(s) 233, 732, 753, 986, 1299, 1384
Tsp45I GTSAC 2 cut(s) 117, 353
TspDTI ATGAA 9 cut(s) 159, 243, 364, 375, 460, 506, 531, 1320, 1409
TspGWI ACGGA 1 cut(s) 862
TspRI CASTG 2 cut(s) 725, 1317
Tth111I GACNNNGTC 1 cut(s) 115
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 417
XapI RAATTY 3 cut(s) 328, 1016, 1405
XceI RCATGY 1 cut(s) 1294
XmnI GAANNNNTTC 2 cut(s) 396, 899
XspI CTAG 1 cut(s) 1295
ZrmI AGTACT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.