Rh4BG016600

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
2600912 .. 2603756
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG016600.1

Sequence Viewer

Length: 1377 bp
ATGGTAGAACCTCAGAGTGAACAAAGAGAGAATGCACCCGTATTGTTCTTGCAGGAATGGTGTATCTATAGGGTTCCCAGCCAGCTCCGCAATGTAGATGAAGCAGCATACACTCCTCAAACACTTTCAATAGGGCCTTTCCACCATGGAAATCCAAAACTGAGGGACATGGAGGCCCATAAGAACAAATATTATGAGTTGTTTTGCAGACGTTCTTCGAAAAGTGAGGACGAACTAAGGAGCTTCATGATGGATCATCGAGAAACAATTCTAAATTGTTATGCAGGTACCTTTAAATGTGAGATCGACTTTTTGAACCTCATCCTAGTTGACGCCTGCTTCATAATTGAACTCTTTTTGACTAATTCTGAACAAGAACAACATAATGCAAATTATTATATACTGAGATCACCGTGGCTGAGGAAAACGGTGGAGAGGGACCTGATACTGTTGGAAAATCAGCTTCCTTATTTTCTTCTTCAAAAGCTATATGACTTTGCCATACCTACCTTTTCCAATGGCCATCTTGGCAATGGAGACCAAGCACAAGTTGGGGGACATGTCCATAAAGATAGCACCAACAGTCAGCAATGCTGCTTCCCTTGTTTCCGGCCCGGTGATTTTCAAGAGAACTCCATCCGATCTGAACCTATTCAACATGGCTTTCTTGAACTTACCTGTAAGTTTTTTAAGGCATACACCAAGGGAAAATCTGTCGGGAATGGATTTGAGCCAAAACACTTCACTGATTTGGTTAGACACTTTCTATGCCCGTGCAAGGAGCTGTTGTGGGTCAAAAATTATGATCAGCCCGTCAAAATTAAATACCATGCAAAAAAGCTGAAGGTTGCAGGAGTGAAGTTTATGCCACTTAGAGAACCATTTGTTATAAAGGAAGACCCTGTGTTGACGTTTAACCCAGTATGTTTGGCACATAAGGAGTTGAAGCTTACAAGACTTTGGGCAGAGTATGAGGCAGAATGCATTTTTCGAAACACCATGGCCTTAGAACAACTGATGTATCCAGAAAAGCCTTATATTTGCTGTTATTTTTCGCTGATGAATCAACTCATTAATACTGAGGAAGATGTGGATGTCCTGATTGAGGATGGAGTAATCTTCAACTTGCTAGGCAGCAACAAAGCAGTGGTAAACATGATCAGTTCATTGTGTGAGCAGATTAAGGAGGATTACTCCTGCTATAGTGAGATCTGTCAAGACCTTAATAGTCATTATAAAACAGTTTTGTACCACCCCTTGGTAATAGTGAGACAGGTTTACTTCAAGGATCTTTGGAGAGGCAGTACAGCTATACTAGGATTCGTTGTCCTAATTTTCACAATTCTTCAATCCCTTCAGGCATTGGAGTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

53.42

Weight (kDa)

6.04

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 22 - 445 6.5e-88 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 890, 1236
Acc36I ACCTGC 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 1258
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 261, 1296
AcoI YGGCCR 1 cut(s) 520
AcuI CTGAAG 2 cut(s) 863, 1340
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 3 cut(s) 289, 1250, 1306
AfiI CCNNNNNNNGG 3 cut(s) 778, 1105, 1258
AflIII ACRYGT 1 cut(s) 559
AluBI AGCT 8 cut(s) 85, 243, 463, 487, 784, 841, 949, 1310
AluI AGCT 8 cut(s) 85, 243, 463, 487, 784, 841, 949, 1310
Alw26I GTCTC 2 cut(s) 531, 1264
AlwI GGATC 2 cut(s) 261, 1296
AoxI GGCC 5 cut(s) 134, 174, 520, 611, 1002
ApeKI GCWGC 3 cut(s) 104, 594, 1134
AseI ATTAAT 1 cut(s) 1074
Asp700I GAANNNNTTC 2 cut(s) 267, 651
Asp718I GGTACC 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 134, 175, 439, 612
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 402, 629
AsuII TTCGAA 2 cut(s) 218, 991
AvaII GGWCC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 903
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 3 cut(s) 116, 581, 1146
BccI CCATC 4 cut(s) 244, 531, 644, 1103
BciVI GTATCC 1 cut(s) 1032
BclI TGATCA 2 cut(s) 805, 1158
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 531, 1264
BfaI CTAG 3 cut(s) 326, 1130, 1316
BfmI CTRYAG 2 cut(s) 67, 1201
BfuAI ACCTGC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 1032
BglI GCCNNNNNGGC 1 cut(s) 528
BglII AGATCT 1 cut(s) 1209
BisI GCNGC 3 cut(s) 105, 595, 1135
BlsI GCNGC 3 cut(s) 106, 596, 1136
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 4 cut(s) 134, 175, 439, 612
BmiI GGNNCC 3 cut(s) 75, 289, 440
BmrFI CCNGG 1 cut(s) 615
BmrI ACTGGG 1 cut(s) 914
BmuI ACTGGG 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 903
BplI GAGNNNNNCTC 2 cut(s) 1178, 1210
Bpu10I CCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 2 cut(s) 218, 991
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 5 cut(s) 145, 413, 702, 999, 1257
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 1288, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 778, 1105, 1258
Bse1I ACTGG 1 cut(s) 920
Bse3DI GCAATG 3 cut(s) 97, 538, 596
BseDI CCNNGG 5 cut(s) 145, 413, 702, 999, 1257
BseGI GGATG 4 cut(s) 321, 636, 1099, 1114
BseLI CCNNNNNNNGG 3 cut(s) 778, 1105, 1258
BseMI GCAATG 3 cut(s) 97, 538, 596
BseMII CTCAG 5 cut(s) 26, 152, 395, 410, 1071
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 116, 581, 1146
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 5 cut(s) 136, 176, 522, 613, 1004
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 610, 615
BslFI GGGAC 3 cut(s) 179, 452, 570
BslI CCNNNNNNNGG 3 cut(s) 778, 1105, 1258
BsmAI GTCTC 2 cut(s) 531, 1264
BsmFI GGGAC 3 cut(s) 179, 452, 570
BsmI GAATGC 2 cut(s) 37, 986
BsnI GGCC 5 cut(s) 136, 176, 522, 613, 1004
Bso31I GGTCTC 1 cut(s) 531
Bsp119I TTCGAA 2 cut(s) 218, 991
Bsp143I GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
Bsp19I CCATGG 2 cut(s) 145, 999
BspACI CCGC 1 cut(s) 88
BspANI GGCC 5 cut(s) 136, 176, 522, 613, 1004
BspCNI CTCAG 5 cut(s) 25, 153, 396, 411, 1072
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 75, 289, 440
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 261, 1296
BspT104I TTCGAA 2 cut(s) 218, 991
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 3 cut(s) 97, 538, 596
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 5 cut(s) 145, 413, 702, 999, 1257
BssMI GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 4 cut(s) 145, 702, 999, 1257
Bst4CI ACNGT 5 cut(s) 414, 430, 450, 584, 1243
BstACI GRCGYC 1 cut(s) 333
BstBI TTCGAA 2 cut(s) 218, 991
BstC8I GCNNGC 2 cut(s) 83, 337
BstDEI CTNAG 8 cut(s) 12, 161, 236, 404, 419, 872, 1006, 1080
BstDSI CCRYGG 3 cut(s) 145, 413, 999
BstENI CCTNNNNNAGG 1 cut(s) 1103
BstF5I GGATG 4 cut(s) 321, 636, 1099, 1114
BstKTI GATC 8 cut(s) 256, 306, 410, 644, 808, 1161, 1212, 1291
BstMAI GTCTC 2 cut(s) 531, 1264
BstMBI GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
BstMWI GCNNNNNNNGC 2 cut(s) 87, 528
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 2 cut(s) 67, 1201
BstV1I GCAGC 3 cut(s) 116, 581, 1146
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 1209, 1288
BstYI RGATCY 2 cut(s) 1209, 1288
BsuI GTATCC 1 cut(s) 1032
BsuRI GGCC 5 cut(s) 136, 176, 522, 613, 1004
BtgI CCRYGG 3 cut(s) 145, 413, 999
BtsCI GGATG 4 cut(s) 321, 636, 1099, 1114
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 2 cut(s) 744, 1152
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 83, 337
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 134, 175, 439, 612
CseI GACGC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 288, 1249, 1305
CviAII CATG 8 cut(s) 146, 169, 247, 560, 659, 830, 1000, 1156
CviQI GTAC 3 cut(s) 288, 1249, 1305
DdeI CTNAG 8 cut(s) 12, 161, 236, 404, 419, 872, 1006, 1080
DpnI GATC 8 cut(s) 255, 305, 409, 643, 807, 1160, 1211, 1290
DpnII GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 520
Eco130I CCWWGG 4 cut(s) 145, 702, 999, 1257
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 2 cut(s) 863, 1340
EcoNI CCTNNNNNAGG 1 cut(s) 1103
EcoO109I RGGNCCY 2 cut(s) 134, 439
EcoT14I CCWWGG 4 cut(s) 145, 702, 999, 1257
EcoT22I ATGCAT 1 cut(s) 986
ErhI CCWWGG 4 cut(s) 145, 702, 999, 1257
FaeI CATG 8 cut(s) 149, 172, 250, 563, 662, 833, 1003, 1159
FaqI GGGAC 3 cut(s) 179, 452, 570
FatI CATG 8 cut(s) 145, 168, 246, 559, 658, 829, 999, 1155
FbaI TGATCA 2 cut(s) 805, 1158
Fnu4HI GCNGC 3 cut(s) 105, 595, 1135
FokI GGATG 4 cut(s) 308, 623, 1106, 1121
Fsp4HI GCNGC 3 cut(s) 105, 595, 1135
FspBI CTAG 3 cut(s) 326, 1130, 1316
GluI GCNGC 3 cut(s) 105, 595, 1135
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 5 cut(s) 136, 176, 522, 613, 1004
HapII CCGG 2 cut(s) 610, 615
HgaI GACGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 8 cut(s) 149, 172, 250, 563, 662, 833, 1003, 1159
HincII GTYRAC 2 cut(s) 331, 909
HindII GTYRAC 2 cut(s) 331, 909
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 2 cut(s) 1063, 1320
HpaII CCGG 2 cut(s) 610, 615
HphI GGTGA 2 cut(s) 402, 629
Hpy166II GTNNAC 5 cut(s) 20, 331, 909, 1153, 1279
Hpy188I TCNGA 4 cut(s) 15, 370, 641, 646
Hpy188III TCNNGA 8 cut(s) 247, 260, 626, 668, 718, 1025, 1099, 1217
Hpy8I GTNNAC 5 cut(s) 20, 331, 909, 1153, 1279
HpyAV CCTTC 2 cut(s) 838, 1364
HpyCH4III ACNGT 5 cut(s) 414, 430, 450, 584, 1243
HpyCH4IV ACGT 2 cut(s) 211, 911
HpyCH4V TGCA 9 cut(s) 35, 52, 207, 284, 389, 777, 833, 851, 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 528
HpyF3I CTNAG 8 cut(s) 12, 161, 236, 404, 419, 872, 1006, 1080
HpySE526I ACGT 2 cut(s) 211, 911
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 8 cut(s) 149, 172, 250, 563, 662, 833, 1003, 1159
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 2 cut(s) 805, 1158
Kzo9I GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
LmnI GCTCC 3 cut(s) 90, 240, 781
Lsp1109I GCAGC 3 cut(s) 116, 581, 1146
MaeI CTAG 3 cut(s) 326, 1130, 1316
MaeII ACGT 2 cut(s) 211, 911
MalI GATC 8 cut(s) 255, 305, 409, 643, 807, 1160, 1211, 1290
MboI GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
MboII GAAGA 7 cut(s) 207, 467, 470, 908, 1097, 1111, 1337
MflI RGATCY 2 cut(s) 1209, 1288
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 9 cut(s) 267, 274, 345, 364, 391, 799, 819, 1332, 1341
MluNI TGGCCA 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 432
Mox20I TGGCCA 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 986
MroXI GAANNNNTTC 2 cut(s) 267, 651
MscI TGGCCA 1 cut(s) 522
MseI TTAA 8 cut(s) 294, 690, 822, 915, 1074, 1182, 1224, 1375
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 2 cut(s) 610, 615
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 37, 986
MwoI GCNNNNNNNGC 2 cut(s) 87, 528
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 2 cut(s) 145, 999
NdeII GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
NlaIII CATG 8 cut(s) 149, 172, 250, 563, 662, 833, 1003, 1159
NlaIV GGNNCC 3 cut(s) 75, 289, 440
NsiI ATGCAT 1 cut(s) 986
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 2 cut(s) 218, 991
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 559
PctI GAATGC 2 cut(s) 37, 986
PdmI GAANNNNTTC 2 cut(s) 267, 651
PfeI GAWTC 2 cut(s) 1063, 1320
PflMI CCANNNNNTGG 1 cut(s) 1258
PkrI GCNGC 3 cut(s) 106, 596, 1136
PpuMI RGGWCCY 1 cut(s) 439
PscI ACATGT 1 cut(s) 559
PshBI ATTAAT 1 cut(s) 1074
PsiI TTATAA 2 cut(s) 890, 1236
Psp5II RGGWCCY 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 75, 289, 440
PspPI GGNCC 4 cut(s) 134, 175, 439, 612
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 2 cut(s) 1209, 1288
RsaI GTAC 3 cut(s) 289, 1250, 1306
RsaNI GTAC 3 cut(s) 288, 1249, 1305
SaqAI TTAA 8 cut(s) 294, 690, 822, 915, 1074, 1182, 1224, 1375
SatI GCNGC 3 cut(s) 105, 595, 1135
Sau3AI GATC 8 cut(s) 253, 303, 407, 641, 805, 1158, 1209, 1288
Sau96I GGNCC 4 cut(s) 134, 175, 439, 612
ScrFI CCNGG 1 cut(s) 615
SfcI CTRYAG 2 cut(s) 67, 1201
SfuI TTCGAA 2 cut(s) 218, 991
SinI GGWCC 1 cut(s) 439
Sse9I AATT 9 cut(s) 267, 274, 345, 364, 391, 799, 819, 1332, 1341
SsiI CCGC 1 cut(s) 88
SspI AATATT 1 cut(s) 191
SspMI CTAG 3 cut(s) 326, 1130, 1316
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 4 cut(s) 145, 702, 999, 1257
TaaI ACNGT 5 cut(s) 414, 430, 450, 584, 1243
TaiI ACGT 2 cut(s) 214, 914
TaqI TCGA 4 cut(s) 218, 259, 306, 991
TasI AATT 9 cut(s) 267, 274, 345, 364, 391, 799, 819, 1332, 1341
TatI WGTACW 1 cut(s) 1304
TfiI GAWTC 2 cut(s) 1063, 1320
Tru1I TTAA 8 cut(s) 294, 690, 822, 915, 1074, 1182, 1224, 1375
Tru9I TTAA 8 cut(s) 294, 690, 822, 915, 1074, 1182, 1224, 1375
TscAI CASTG 2 cut(s) 751, 1152
TseI GCWGC 3 cut(s) 104, 594, 1134
TspDTI ATGAA 5 cut(s) 114, 235, 331, 1076, 1155
TspRI CASTG 2 cut(s) 751, 1152
Van91I CCANNNNNTGG 1 cut(s) 1258
VpaK11BI GGWCC 1 cut(s) 439
VspI ATTAAT 1 cut(s) 1074
XagI CCTNNNNNAGG 1 cut(s) 1103
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 2 cut(s) 530, 548
XmnI GAANNNNTTC 2 cut(s) 267, 651
XspI CTAG 3 cut(s) 326, 1130, 1316
Zsp2I ATGCAT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.