Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005167.1

Orthogroup ID

OG0000821

Physical Location & Seq

Genomic Coordinates Forward (+)

127832 .. 129205

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005167.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

atggagaagcataaaataagatactcagacaatttcagaaaacgttattgggaaggaaggggtaaactatcagacaaccaaaaagttgttgtgctaaaaaacttcatcaatgtttctatagaaagcatcattaattgttatgctgggaccattgatcttgagaacaaggataagcttcgggatataattctagttgatgcctgcttcataattgagctctttctgaggaactgcgaaataaaagatcatgacaaggattacatattaagttcaccatggctgaggaaagctatagagctggaactgatactatttgaaaatcagcttccttattctcttcttcaagacttatatgaccatgtgtccccagcctcttccagttctcttccccaaaaagaagcatgtgaacatgaatttgctaaagatattgttgacaaaggtaaacctgttcaggctgttcattcctttgtcgagcttacctgtaagtgttttaaagatttcagtaagggaaaatcggtcaaggatggaaaaaaaccagcctcttccagttcttttccccaaaaagaagcacacgaacatgaatttgctatagatattgttgacaaacctaaacctgttaaggctgttcattcctttctcgagcttacctgtaagttttttaaagatttcagtaagggaaaatcggtcatggatggagaaaaattaccaaaacacttcactgacttggtaagacattttatgcttccacatccaagggaagaaatgacatgggaggataccaccaaaagtagatacagtataagaatgctgacggcggctggggtgaactttattccaggtgaagatcatgaacgtcttgtcataaagattgatggttctcaagccgctaaatgtgttactggaaagcttaagttaaacatggcatgtttccgaagtatgaacttgaaacttactccattttgtgtaaaggatgacacagaatgcattattcgaaatgtcatggcactggagcagtttgtgtacccagagaaggcttacgtttgcaattattttttgatgatggacaaacttgtggacactgaggaagatgtggatgtcctggtggagaaaaaagtgatcgtcaacatgctaggaagtaaccaagaagtggcgcatctagttaataaactttgcgatcatatcatggaagaaaaatcctgctataatcatatctgtaaaaagcttaatacgcgctatgagagttctcttaaccgacatttggtatccctgaaacgagtttacttcaaggatgtttggacaggcagtgcaactttttttggagttgtactcgtacttctcacaatcgttgaaatcattatgtcattcagaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

457

Amino Acids

52.8

Weight (kDa)

8.05

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65985 AT1G65985 AT1G67150 AT1G67150 AT1G67150 AT1G67150 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G28580 AT2G44930 AT3G60470
fragaria_vesca	FvH4_7g09691 FvH4_7g09700 FvH4_7g09710
malus_domestica	MD00G1041300.v1.1
prunus_persica	Prupe.2G124600_v2.0.a1 Prupe.2G124800_v2.0.a1 Prupe.2G124900_v2.0.a1 Prupe.2G125100_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125200_v2.0.a1 Prupe.2G125400_v2.0.a1 Prupe.2G125400_v2.0.a1
pyrus_communis	pycom02g17910 pycom02g18260 pycom02g18340
rosa_chinensis	RchiOBHm_Chr1g0346611 RchiOBHm_Chr1g0346641 RchiOBHm_Chr1g0346651 RchiOBHm_Chr1g0346791 RchiOBHm_Chr4g0388531
rosa_laevigata	RLG00000010045 RLG00000010060 RLG00000028784 RLG00000028788 RLG00000028789
rosa_multiflora	Rmu_sc0001241.1_g000008 Rmu_sc0001241.1_g000009 Rmu_sc0002357.1_g000013 Rmu_sc0002640.1_g000020 Rmu_sc0005167.1_g000027 Rmu_sc0006463.1_g000009 Rmu_sc0006463.1_g000017
rosa_roxburghii	Rroxscaffold_4G00308200 Rroxscaffold_4G00308310 Rroxscaffold_4G00308390 Rroxscaffold_5G00334860 Rroxscaffold_5G00334990
rosa_rugosa	Rorug01G0181400 Rorug01G0181700 Rorug01G0182300 Rorug03G0318400
rosa_samantha	Rh1AG200700 Rh1BG166900 Rh1BG167000 Rh1BG167700 Rh1DG197800 Rh1DG198500 Rh4BG016600 Rh4DG017100
rosa_wichuraiana	Rw1G016810 Rw1G016820 Rw4G001580 Rw4G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1147
AccII	CGCG	1 cut(s)	1231
AciI	CCGC	2 cut(s)	815, 885
AclI	AACGTT	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	413, 581
AfaI	GTAC	3 cut(s)	1022, 1326, 1332
AfiI	CCNNNNNNNGG	3 cut(s)	1030, 1147, 1258
AflII	CTTAAG	1 cut(s)	908
AgsI	TTSAA	5 cut(s)	317, 344, 946, 1285, 1349
AhdI	GACNNNNNGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	835, 1098
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	9 cut(s)	175, 217, 290, 298, 325, 475, 643, 907, 1222
AluI	AGCT	9 cut(s)	175, 217, 290, 298, 325, 475, 643, 907, 1222
Alw21I	GWGCWC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	413, 581
AseI	ATTAAT	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	1153, 1233
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	264, 835, 851
AsuII	TTCGAA	1 cut(s)	991
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	1317, 1349
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	281
BccI	CCATC	4 cut(s)	518, 686, 866, 1054
BceAI	ACGGC	1 cut(s)	828
BciT130I	CCWGG	2 cut(s)	837, 1100
BciVI	GTATCC	2 cut(s)	769, 1273
BfaI	CTAG	3 cut(s)	191, 1130, 1157
BfmI	CTRYAG	3 cut(s)	117, 291, 588
BfrI	CTTAAG	1 cut(s)	908
BfuI	GTATCC	2 cut(s)	769, 1273
BisI	GCNGC	2 cut(s)	816, 885
BlsI	GCNGC	2 cut(s)	817, 886
Bme1390I	CCNGG	2 cut(s)	837, 1100
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	837, 1100
BmsI	GCATC	3 cut(s)	135, 187, 1162
BplI	GAGNNNNNCTC	2 cut(s)	1311, 1343
BpmI	CTGGAG	1 cut(s)	1028
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	991
BpuEI	CTTGAG	2 cut(s)	179, 864
BsaJI	CCNNGG	2 cut(s)	275, 752
Bsc4I	CCNNNNNNNGG	3 cut(s)	1030, 1147, 1258
Bse1I	ACTGG	4 cut(s)	378, 546, 904, 1011
BseBI	CCWGG	2 cut(s)	837, 1100
BseDI	CCNNGG	2 cut(s)	275, 752
BseGI	GGATG	6 cut(s)	529, 697, 748, 976, 1099, 1294
BseLI	CCNNNNNNNGG	3 cut(s)	1030, 1147, 1258
BseMII	CTCAG	4 cut(s)	39, 215, 272, 1071
BseNI	ACTGG	4 cut(s)	378, 546, 904, 1011
BseYI	CCCAGC	3 cut(s)	143, 367, 818
Bsh1236I	CGCG	1 cut(s)	1231
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	638
BslFI	GGGAC	2 cut(s)	160, 349
BslI	CCNNNNNNNGG	3 cut(s)	1030, 1147, 1258
BsmFI	GGGAC	2 cut(s)	160, 349
BsmI	GAATGC	2 cut(s)	810, 986
BsoBI	CYCGRG	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	991
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	5 cut(s)	154, 244, 844, 1116, 1174
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	2 cut(s)	815, 885
BspCNI	CTCAG	4 cut(s)	38, 216, 273, 1072
BspFNI	CGCG	1 cut(s)	1231
BspHI	TCATGA	2 cut(s)	247, 847
BspLI	GGNNCC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	991
BspTI	CTTAAG	1 cut(s)	908
BsrI	ACTGG	4 cut(s)	378, 546, 904, 1011
BssECI	CCNNGG	2 cut(s)	275, 752
BssMI	GATC	5 cut(s)	154, 244, 844, 1116, 1174
BssT1I	CCWWGG	2 cut(s)	275, 752
Bst2UI	CCWGG	2 cut(s)	837, 1100
Bst4CI	ACNGT	1 cut(s)	797
Bst6I	CTCTTC	4 cut(s)	342, 379, 390, 547
BstAFI	CTTAAG	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	991
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	25, 224, 281, 1080
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	6 cut(s)	529, 697, 748, 976, 1099, 1294
BstFNI	CGCG	1 cut(s)	1231
BstHHI	GCGC	2 cut(s)	1153, 1233
BstKTI	GATC	5 cut(s)	157, 247, 847, 1119, 1177
BstMBI	GATC	5 cut(s)	154, 244, 844, 1116, 1174
BstMWI	GCNNNNNNNGC	1 cut(s)	1228
BstNI	CCWGG	2 cut(s)	837, 1100
BstNSI	RCATGY	3 cut(s)	405, 927, 1129
BstSCI	CCNGG	2 cut(s)	835, 1098
BstSFI	CTRYAG	3 cut(s)	117, 291, 588
BstUI	CGCG	1 cut(s)	1231
BsuI	GTATCC	2 cut(s)	769, 1273
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	6 cut(s)	529, 697, 748, 976, 1099, 1294
BtsI	GCAGTG	1 cut(s)	1309
BtsIMutI	CAGTG	4 cut(s)	717, 1004, 1077, 1309
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	2 cut(s)	247, 847
CfoI	GCGC	2 cut(s)	1153, 1233
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	1021, 1325, 1331
CviQI	GTAC	3 cut(s)	1021, 1325, 1331
DdeI	CTNAG	4 cut(s)	25, 224, 281, 1080
DpnI	GATC	5 cut(s)	156, 246, 846, 1118, 1176
DpnII	GATC	5 cut(s)	154, 244, 844, 1116, 1174
DraI	TTTAAA	2 cut(s)	493, 661
DriI	GACNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	4 cut(s)	342, 379, 390, 547
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	4 cut(s)	342, 379, 390, 547
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	275, 752
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	835, 1098
EcoT14I	CCWWGG	2 cut(s)	275, 752
EcoT22I	ATGCAT	1 cut(s)	986
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	275, 752
FaqI	GGGAC	2 cut(s)	160, 349
Fnu4HI	GCNGC	2 cut(s)	816, 885
FokI	GGATG	6 cut(s)	536, 704, 735, 983, 1106, 1301
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	816, 885
FspBI	CTAG	3 cut(s)	191, 1130, 1157
GlaI	GCGC	2 cut(s)	1152, 1232
GluI	GCNGC	2 cut(s)	816, 885
GsaI	CCCAGC	3 cut(s)	147, 371, 822
GsuI	CTGGAG	1 cut(s)	1028
HhaI	GCGC	2 cut(s)	1153, 1233
Hin6I	GCGC	2 cut(s)	1151, 1231
HinP1I	GCGC	2 cut(s)	1151, 1231
HincII	GTYRAC	3 cut(s)	433, 601, 1123
HindII	GTYRAC	3 cut(s)	433, 601, 1123
HindIII	AAGCTT	3 cut(s)	173, 905, 1220
HphI	GGTGA	3 cut(s)	264, 835, 851
Hpy188I	TCNGA	6 cut(s)	28, 38, 73, 225, 932, 1367
Hpy188III	TCNNGA	6 cut(s)	158, 179, 248, 344, 638, 848
HpyAV	CCTTC	3 cut(s)	47, 51, 1024
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	3 cut(s)	43, 853, 1038
HpyCH4V	TGCA	3 cut(s)	984, 1044, 1307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1228
HpyF3I	CTNAG	4 cut(s)	25, 224, 281, 1080
HpySE526I	ACGT	3 cut(s)	43, 853, 1038
HspAI	GCGC	2 cut(s)	1151, 1231
Kzo9I	GATC	5 cut(s)	154, 244, 844, 1116, 1174
LmnI	GCTCC	1 cut(s)	1009
LweI	GCATC	3 cut(s)	135, 187, 1162
MaeI	CTAG	3 cut(s)	191, 1130, 1157
MaeII	ACGT	3 cut(s)	43, 853, 1038
MaeIII	GTNAC	2 cut(s)	895, 1136
MalI	GATC	5 cut(s)	156, 246, 846, 1118, 1176
MboI	GATC	5 cut(s)	154, 244, 844, 1116, 1174
MboII	GAAGA	9 cut(s)	329, 332, 366, 377, 534, 770, 854, 1097, 1199
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	8 cut(s)	31, 133, 186, 210, 413, 581, 701, 1045
MnlI	CCTC	6 cut(s)	219, 276, 382, 550, 766, 1075
Mph1103I	ATGCAT	1 cut(s)	986
MslI	CAYNNNNRTG	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	908
MspR9I	CCNGG	2 cut(s)	837, 1100
Mva1269I	GAATGC	2 cut(s)	810, 986
MvaI	CCWGG	2 cut(s)	837, 1100
MvnI	CGCG	1 cut(s)	1231
MwoI	GCNNNNNNNGC	1 cut(s)	1228
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	5 cut(s)	154, 244, 844, 1116, 1174
NlaIV	GGNNCC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	986
NspI	RCATGY	3 cut(s)	405, 927, 1129
NspV	TTCGAA	1 cut(s)	991
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	2 cut(s)	247, 847
PctI	GAATGC	2 cut(s)	810, 986
PflMI	CCANNNNNTGG	1 cut(s)	1147
PkrI	GCNGC	2 cut(s)	817, 886
PshBI	ATTAAT	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	835, 1098
PspFI	CCCAGC	3 cut(s)	143, 367, 818
PspGI	CCWGG	2 cut(s)	835, 1098
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	1022, 1326, 1332
RsaNI	GTAC	3 cut(s)	1021, 1325, 1331
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	816, 885
Sau3AI	GATC	5 cut(s)	154, 244, 844, 1116, 1174
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	837, 1100
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	135, 187, 1162
SfcI	CTRYAG	3 cut(s)	117, 291, 588
Sfr274I	CTCGAG	1 cut(s)	638
SfuI	TTCGAA	1 cut(s)	991
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	158, 638, 879, 908
SmoI	CTYRAG	4 cut(s)	158, 638, 879, 908
Sse9I	AATT	8 cut(s)	31, 133, 186, 210, 413, 581, 701, 1045
SsiI	CCGC	2 cut(s)	815, 885
SspMI	CTAG	3 cut(s)	191, 1130, 1157
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	835, 1098
StyI	CCWWGG	2 cut(s)	275, 752
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	3 cut(s)	46, 856, 1041
TaqI	TCGA	3 cut(s)	471, 639, 991
TaqII	GACCGA	2 cut(s)	505, 673
TasI	AATT	8 cut(s)	31, 133, 186, 210, 413, 581, 701, 1045
TatI	WGTACW	1 cut(s)	1324
TauI	GCSGC	2 cut(s)	818, 887
TscAI	CASTG	4 cut(s)	724, 1011, 1084, 1309
TspDTI	ATGAA	8 cut(s)	94, 196, 426, 449, 594, 617, 864, 953
TspRI	CASTG	4 cut(s)	724, 1011, 1084, 1309
Van91I	CCANNNNNTGG	1 cut(s)	1147
Vha464I	CTTAAG	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	413, 581
XceI	RCATGY	3 cut(s)	405, 927, 1129
XhoI	CTCGAG	1 cut(s)	638
XspI	CTAG	3 cut(s)	191, 1130, 1157
Zsp2I	ATGCAT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.