Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

2386611 .. 2388696

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGCTTCGTATTGTTCAAATCGCGTTTCTATGTCTCGTTCTCGTCGCCGGGATCTCGATCTCCACGGCGATATCAGAGACTGAGACTATATACGAGATCCTCCTGGCAAACGGATTACCTTCGGGGATATTCCCGAAAGGTGTCAGAGAATTCACCTTCGACGTCGAAACGGGACGATTCTCGGTTTATTTGAATCAGGCATGCGAGGCTAAATACGAGACTGAGATACATTACGACGCCAATATTACGGGGACTATAGGTTCTGCTCAAATCTCTGATTTGTCTGGAATCTCGGCGCAAGAGCTATTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTCTTATATACTTCGACGTTGGTGTTGTTCGAAAGCAATATTCTTTGTCTTTGTTCGAGACTCCGAGAGATTGCGTTCCGGTTCGTGGGATTCACAAGGTTGAGTTGCCATTGTACCGAGTAGATCAAAATCTTGGGAGAAACATCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

5.17

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	31 - 139	1.3e-32	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	26
AclWI	GGATC	2 cut(s)	62, 94
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	165, 240
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	329, 356, 443
AgsI	TTSAA	2 cut(s)	20, 196
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	247, 279
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw26I	GTCTC	5 cut(s)	41, 74, 80, 215, 410
AlwI	GGATC	2 cut(s)	62, 94
AlwNI	CAGNNNCTG	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	5 cut(s)	41, 74, 80, 215, 410
BfmI	CTRYAG	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	52, 107
BmgBI	CACGTC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	52, 107
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	52
BsaBI	GATNNNNATC	2 cut(s)	59, 486
BsaHI	GRCGYC	2 cut(s)	165, 240
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	2 cut(s)	322, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 356, 443
Bse8I	GATNNNNATC	2 cut(s)	59, 486
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	66
BseJI	GATNNNNATC	2 cut(s)	59, 486
BseLI	CCNNNNNNNGG	3 cut(s)	329, 356, 443
BseMII	CTCAG	2 cut(s)	75, 216
Bsh1236I	CGCG	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	51, 323, 437
BslFI	GGGAC	2 cut(s)	189, 268
BslI	CCNNNNNNNGG	3 cut(s)	329, 356, 443
BsmAI	GTCTC	5 cut(s)	41, 74, 80, 215, 410
BsmFI	GGGAC	2 cut(s)	189, 268
Bsp119I	TTCGAA	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	54, 60, 99, 481
BspCNI	CTCAG	2 cut(s)	76, 217
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	2 cut(s)	62, 94
BspT104I	TTCGAA	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	4 cut(s)	54, 60, 99, 481
BssNI	GRCGYC	2 cut(s)	165, 240
Bst2UI	CCWGG	1 cut(s)	107
BstACI	GRCGYC	2 cut(s)	165, 240
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	84, 225
BstDSI	CCRYGG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	57, 63, 102, 484
BstMAI	GTCTC	5 cut(s)	41, 74, 80, 215, 410
BstMBI	GATC	4 cut(s)	54, 60, 99, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	50, 105
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	54, 99
BstYI	RGATCY	2 cut(s)	54, 99
BtgI	CCRYGG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	301
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	2 cut(s)	212, 307
CviKI_1	RGCY	2 cut(s)	212, 307
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	84, 225
DpnI	GATC	4 cut(s)	56, 62, 101, 483
DpnII	GATC	4 cut(s)	54, 60, 99, 481
Eco32I	GATATC	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	75
FaeI	CATG	1 cut(s)	207
FaiI	YATR	7 cut(s)	34, 92, 94, 205, 260, 365, 367
FaqI	GGGAC	2 cut(s)	189, 268
FatI	CATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	342
GlaI	GCGC	1 cut(s)	300
HapII	CCGG	3 cut(s)	51, 323, 437
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	2 cut(s)	165, 240
Hin1II	CATG	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	7 cut(s)	180, 196, 291, 333, 339, 418, 448
HpaII	CCGG	3 cut(s)	51, 323, 437
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	5 cut(s)	79, 149, 280, 338, 423
Hpy188III	TCNNGA	4 cut(s)	58, 136, 288, 415
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	6 cut(s)	50, 167, 170, 242, 347, 377
HpyAV	CCTTC	2 cut(s)	132, 169
HpyCH4IV	ACGT	3 cut(s)	165, 345, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	84, 225
HpySE526I	ACGT	3 cut(s)	165, 345, 375
Hsp92I	GRCGYC	2 cut(s)	165, 240
Hsp92II	CATG	1 cut(s)	207
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	4 cut(s)	54, 60, 99, 481
LpnPI	CCDG	8 cut(s)	64, 92, 119, 185, 273, 336, 342, 450
MaeII	ACGT	3 cut(s)	165, 345, 375
MalI	GATC	4 cut(s)	56, 62, 101, 483
MboI	GATC	4 cut(s)	54, 60, 99, 481
MflI	RGATCY	2 cut(s)	54, 99
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	348, 412
MnlI	CCTC	2 cut(s)	113, 202
MseI	TTAA	1 cut(s)	327
MspI	CCGG	3 cut(s)	51, 323, 437
MspR9I	CCNGG	2 cut(s)	52, 107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	4 cut(s)	54, 60, 99, 481
NlaIII	CATG	1 cut(s)	207
NmeAIII	GCCGAG	2 cut(s)	275, 375
NspI	RCATGY	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	207
PfeI	GAWTC	5 cut(s)	180, 196, 291, 333, 448
PleI	GAGTC	2 cut(s)	347, 412
PpsI	GAGTC	2 cut(s)	347, 412
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	54, 99
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	54, 60, 99, 481
SchI	GAGTC	2 cut(s)	348, 412
ScrFI	CCNGG	2 cut(s)	52, 107
SetI	ASST	9 cut(s)	124, 145, 161, 168, 265, 309, 348, 378, 459
SfcI	CTRYAG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	388
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	1 cut(s)	152
SspI	AATATT	2 cut(s)	247, 398
StyD4I	CCNGG	2 cut(s)	50, 105
TaiI	ACGT	3 cut(s)	168, 348, 378
TaqI	TCGA	7 cut(s)	59, 162, 168, 342, 372, 388, 414
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	5 cut(s)	180, 196, 291, 333, 448
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	129
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.