Rroxscaffold_5G00354390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000944
Physical Location & Seq
Forward (+)
32846129 .. 32847715
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354390.1

Sequence Viewer

Length: 279 bp
ATGGCTTACCCATCGGCCTTCTCCCCAAAGGCATCACAAAATATTCCCTCAATGATTCCAGCAACGATTCCGGGTGTTTCTGCCCCAGCCTTGCGGCGCCAAGTTCGAGAATCAGGTCTGATAGCAATTGACGAAAAACACCCCTCCGATCAACAATATGCTTTACCCATATTTGATCCGTCCTCTACTTTACTTAGATCTTTATCATCTCGCTTCACTTACCGAGAGAGAGAGAGATCTTTATCATCTCGCTTCTTTTTTCCTAATTTTTCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

10.46

Isoelectric Point (pI)

79.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 97
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 72
BanI GGYRCC 1 cut(s) 96
BccI CCATC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 100
BglII AGATCT 2 cut(s) 197, 236
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 2 cut(s) 202, 241
BsaHI GRCGYC 1 cut(s) 97
Bse8I GATNNNNATC 2 cut(s) 202, 241
BseJI GATNNNNATC 2 cut(s) 202, 241
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 71
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 148, 175, 197, 236
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 96
BssMI GATC 4 cut(s) 148, 175, 197, 236
BssNI GRCGYC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 151, 178, 200, 239
BstMBI GATC 4 cut(s) 148, 175, 197, 236
BstSCI CCNGG 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 197, 236
BstYI RGATCY 2 cut(s) 197, 236
BsuRI GGCC 1 cut(s) 17
CfoI GCGC 1 cut(s) 99
CviJI RGCY 3 cut(s) 5, 17, 89
CviKI_1 RGCY 3 cut(s) 5, 17, 89
DdeI CTNAG 1 cut(s) 194
DinI GGCGCC 1 cut(s) 98
DpnI GATC 4 cut(s) 150, 177, 199, 238
DpnII GATC 4 cut(s) 148, 175, 197, 236
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaiI YATR 2 cut(s) 159, 170
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 95
GsaI CCCAGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 55, 67, 110
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 120, 148
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 97
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 148, 175, 197, 236
LpnPI CCDG 4 cut(s) 72, 84, 99, 99
LweI GCATC 1 cut(s) 41
MalI GATC 4 cut(s) 150, 177, 199, 238
MboI GATC 4 cut(s) 148, 175, 197, 236
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 197, 236
MluCI AATT 2 cut(s) 126, 265
Mly113I GGCGCC 1 cut(s) 97
MnlI CCTC 3 cut(s) 58, 154, 193
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 126
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 1 cut(s) 72
NdeII GATC 4 cut(s) 148, 175, 197, 236
NlaIV GGNNCC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 55, 67, 110
PkrI GCNGC 1 cut(s) 96
PluTI GGCGCC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 98
PsuI RGATCY 2 cut(s) 197, 236
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 4 cut(s) 148, 175, 197, 236
ScrFI CCNGG 1 cut(s) 72
SetI ASST 1 cut(s) 118
SfaNI GCATC 1 cut(s) 41
SfoI GGCGCC 1 cut(s) 98
Sse9I AATT 2 cut(s) 126, 265
SsiI CCGC 1 cut(s) 94
SspDI GGCGCC 1 cut(s) 96
SspI AATATT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 126, 265
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 3 cut(s) 55, 67, 110
TspGWI ACGGA 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.