Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

18519464 .. 18520431

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G189800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTGATACACCTGATGTGCTTCCTCCTCCTCTCGTTGCTCTCATTCACCACGTGCTCCAATTCGTCGCAGCGTTCCGTCTACGACGTCCTGCGGGCCCACGGACTTCCGATGGGCCTGCTGCCCAAGGGCGTAGTCGACTTCGAAGTCGACGACGAGGGCCGGTTCCAGGTGCACCTGGATCAGGCCTGCAATGCCAAATTCGAGAGCCAGTTGCATTACGATAGGAACGTCTCGGGGACGCTGAGTTTCGGGCAGATCGGATCCCTGTCGGGTATTTCGGCCCAGGAGCTGTTCCTCTGGTTCCCGGTTAAAGGAATCCGGGTCGACGTGCCCAGCTCCGGCATCATTTACTTCGATGTCGGCGTCGTTTATAAGCAATTCTCCTTGTCTCTATTCGAAACTCCGCCGGTTTGCACCGCTGCCACCACCTCCGTTGAAGCCATTGGAACCGTGTTCGAGGGCGAATCGGGGAAATTGCGGTACAAGCTTGATCATGAACTTGTTGGGAGAGATTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

175

Amino Acids

19.22

Weight (kDa)

5.26

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	4 cut(s)	81, 138, 150, 327
AciI	CCGC	4 cut(s)	94, 407, 420, 481
AclWI	GGATC	3 cut(s)	189, 258, 271
AcsI	RAATTY	1 cut(s)	200
AcvI	CACGTG	1 cut(s)	54
AcyI	GRCGYC	2 cut(s)	87, 366
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	4 cut(s)	169, 184, 314, 341
AgsI	TTSAA	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	3 cut(s)	168, 177, 285
AluBI	AGCT	3 cut(s)	292, 339, 490
AluI	AGCT	3 cut(s)	292, 339, 490
Alw21I	GWGCWC	2 cut(s)	59, 177
Alw26I	GTCTC	2 cut(s)	238, 396
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	189, 258, 271
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	5 cut(s)	96, 115, 160, 186, 282
ApaI	GGGCCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	70, 121, 422
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	5 cut(s)	96, 97, 115, 160, 283
AsuC2I	CCSGG	2 cut(s)	308, 323
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	2 cut(s)	144, 399
AvaI	CYCGRG	1 cut(s)	235
BaeGI	GKGCMC	3 cut(s)	100, 177, 336
BamHI	GGATCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	100
BbrPI	CACGTG	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	59, 177
BbvI	GCAGC	3 cut(s)	82, 108, 409
BccI	CCATC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	3 cut(s)	170, 179, 287
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	308, 323
BcoDI	GTCTC	2 cut(s)	238, 396
BisI	GCNGC	3 cut(s)	71, 122, 423
BlsI	GCNGC	3 cut(s)	72, 123, 424
Bme1390I	CCNGG	5 cut(s)	170, 179, 287, 308, 323
BmeT110I	CYCGRG	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	5 cut(s)	96, 97, 115, 160, 283
BmiI	GGNNCC	5 cut(s)	98, 167, 265, 305, 451
BmrFI	CCNGG	5 cut(s)	170, 179, 287, 308, 323
BmsI	GCATC	1 cut(s)	354
Bpu14I	TTCGAA	2 cut(s)	144, 399
BpuMI	CCSGG	2 cut(s)	308, 323
BsaAI	YACGTR	1 cut(s)	54
BsaHI	GRCGYC	2 cut(s)	87, 366
BsaJI	CCNNGG	3 cut(s)	100, 126, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 184, 314, 341
Bse118I	RCCGGY	2 cut(s)	162, 409
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	3 cut(s)	170, 179, 287
BseDI	CCNNGG	3 cut(s)	100, 126, 285
BseLI	CCNNNNNNNGG	4 cut(s)	169, 184, 314, 341
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	17, 20
BseSI	GKGCMC	3 cut(s)	100, 177, 336
BseXI	GCAGC	3 cut(s)	82, 108, 409
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	5 cut(s)	98, 117, 162, 188, 284
BsiHKAI	GWGCWC	2 cut(s)	59, 177
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	5 cut(s)	163, 308, 322, 342, 410
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	4 cut(s)	169, 184, 314, 341
BsmAI	GTCTC	2 cut(s)	238, 396
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	5 cut(s)	98, 117, 162, 188, 284
BsoBI	CYCGRG	1 cut(s)	235
Bsp119I	TTCGAA	2 cut(s)	144, 399
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	4 cut(s)	59, 100, 177, 336
Bsp143I	GATC	4 cut(s)	181, 258, 263, 493
BspACI	CCGC	4 cut(s)	94, 407, 420, 481
BspANI	GGCC	5 cut(s)	98, 117, 162, 188, 284
BspCNI	CTCAG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	5 cut(s)	98, 167, 265, 305, 451
BspPI	GGATC	3 cut(s)	189, 258, 271
BspT104I	TTCGAA	2 cut(s)	144, 399
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	162, 409
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	2 cut(s)	162, 409
BssECI	CCNNGG	3 cut(s)	100, 126, 285
BssMI	GATC	4 cut(s)	181, 258, 263, 493
BssNI	GRCGYC	2 cut(s)	87, 366
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	170, 179, 287
Bst4CI	ACNGT	1 cut(s)	454
BstACI	GRCGYC	2 cut(s)	87, 366
BstBAI	YACGTR	1 cut(s)	54
BstBI	TTCGAA	2 cut(s)	144, 399
BstC8I	GCNNGC	3 cut(s)	96, 119, 190
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstKTI	GATC	4 cut(s)	184, 261, 266, 496
BstMAI	GTCTC	2 cut(s)	238, 396
BstMBI	GATC	4 cut(s)	181, 258, 263, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 487
BstNI	CCWGG	3 cut(s)	170, 179, 287
BstSCI	CCNGG	5 cut(s)	168, 177, 285, 306, 321
BstSLI	GKGCMC	3 cut(s)	100, 177, 336
BstV1I	GCAGC	3 cut(s)	82, 108, 409
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	5 cut(s)	98, 117, 162, 188, 284
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	96, 119, 190
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	2 cut(s)	162, 409
Cfr13I	GGNCC	5 cut(s)	96, 97, 115, 160, 283
CseI	GACGC	2 cut(s)	250, 355
Csp6I	GTAC	1 cut(s)	484
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	4 cut(s)	183, 260, 265, 495
DpnII	GATC	4 cut(s)	181, 258, 263, 493
DraIII	CACNNNGTG	1 cut(s)	54
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	168, 177, 285
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	500
FaiI	YATR	2 cut(s)	375, 498
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	496
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	4 cut(s)	81, 138, 150, 327
Fnu4HI	GCNGC	3 cut(s)	71, 122, 423
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	71, 122, 423
GluI	GCNGC	3 cut(s)	71, 122, 423
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	98, 117, 162, 188, 284
HapII	CCGG	5 cut(s)	163, 308, 322, 342, 410
HgaI	GACGC	2 cut(s)	250, 355
Hin1I	GRCGYC	2 cut(s)	87, 366
Hin1II	CATG	1 cut(s)	500
HincII	GTYRAC	3 cut(s)	139, 151, 328
HindII	GTYRAC	3 cut(s)	139, 151, 328
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	318, 467
HpaII	CCGG	5 cut(s)	163, 308, 322, 342, 410
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	5 cut(s)	82, 139, 151, 175, 328
Hpy188I	TCNGA	2 cut(s)	111, 263
Hpy188III	TCNNGA	2 cut(s)	205, 497
Hpy8I	GTNNAC	5 cut(s)	82, 139, 151, 175, 328
Hpy99I	CGWCG	6 cut(s)	70, 89, 155, 158, 332, 371
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	4 cut(s)	53, 87, 231, 330
HpyCH4V	TGCA	4 cut(s)	175, 192, 217, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 487
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	4 cut(s)	53, 87, 231, 330
Hsp92I	GRCGYC	2 cut(s)	87, 366
Hsp92II	CATG	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	181, 258, 263, 493
LmnI	GCTCC	3 cut(s)	62, 289, 344
Lsp1109I	GCAGC	3 cut(s)	82, 108, 409
LweI	GCATC	1 cut(s)	354
MaeII	ACGT	4 cut(s)	53, 87, 231, 330
MalI	GATC	4 cut(s)	183, 260, 265, 495
MboI	GATC	4 cut(s)	181, 258, 263, 493
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	4 cut(s)	59, 100, 177, 336
MluCI	AATT	4 cut(s)	61, 200, 380, 476
MnlI	CCTC	7 cut(s)	35, 38, 41, 151, 308, 442, 454
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	5 cut(s)	163, 308, 322, 342, 410
MspR9I	CCNGG	5 cut(s)	170, 179, 287, 308, 323
MvaI	CCWGG	3 cut(s)	170, 179, 287
MwoI	GCNNNNNNNGC	2 cut(s)	194, 487
NciI	CCSGG	2 cut(s)	308, 323
NdeII	GATC	4 cut(s)	181, 258, 263, 493
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	5 cut(s)	98, 167, 265, 305, 451
NspV	TTCGAA	2 cut(s)	144, 399
PagI	TCATGA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 228, 363
PfeI	GAWTC	2 cut(s)	318, 467
PkrI	GCNGC	3 cut(s)	72, 123, 424
PmaCI	CACGTG	1 cut(s)	54
PmlI	CACGTG	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	3 cut(s)	168, 177, 285
PspCI	CACGTG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	3 cut(s)	168, 177, 285
PspN4I	GGNNCC	5 cut(s)	98, 167, 265, 305, 451
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	5 cut(s)	96, 97, 115, 160, 283
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SalI	GTCGAC	3 cut(s)	137, 149, 326
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	3 cut(s)	71, 122, 423
Sau3AI	GATC	4 cut(s)	181, 258, 263, 493
Sau96I	GGNCC	5 cut(s)	96, 97, 115, 160, 283
ScrFI	CCNGG	5 cut(s)	170, 179, 287, 308, 323
SduI	GDGCHC	4 cut(s)	59, 100, 177, 336
SfaNI	GCATC	1 cut(s)	354
SfuI	TTCGAA	2 cut(s)	144, 399
Sse9I	AATT	4 cut(s)	61, 200, 380, 476
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	94, 407, 420, 481
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	5 cut(s)	168, 177, 285, 306, 321
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	4 cut(s)	56, 90, 234, 333
TaqI	TCGA	8 cut(s)	138, 144, 150, 204, 327, 357, 399, 459
TasI	AATT	4 cut(s)	61, 200, 380, 476
TfiI	GAWTC	2 cut(s)	318, 467
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	3 cut(s)	70, 121, 422
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	3 cut(s)	67, 117, 424
VneI	GTGCAC	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	200
XmiI	GTMKAC	4 cut(s)	81, 138, 150, 327
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.