Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

23843451 .. 23844906

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1151400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTGCAGCTGCCGCACTTCACCTGCTGTTTCCTCCTCTTACTGCTCCCGTTGATCACGTGCTCGAATTCGAAGCTGACGACGGTGTACGACGTGCTGCGGGCCCACGGGCTTCCGATGGGACTGCTGCCGAAAGGGGTCGTCGATTTCGAGGTCGACGACGCCGGCAGGTTTACGGCCCACCTGGATCAGGCCTGCAATGCCAAGTTCGAGAGCGAGTTGCATTACGACAGAAACGTTTCGGGGACGCTGAGTTTCGGGCGGATCGGATCCTTGTCGGGTATTTCGGCGCAGGAGCTGTTCCTCTGGTTTCCGGTTAAGGGTATCCGGATCGACGTGCCCAGCTCCGGCATCATTTACTTCGATGTCGGCGTCGTTTATAAGCAGTTCTCGCTGTCGCTGTTCGAAACGCCGCCTGATTGCACGGCCGCCTCCGGCAGCTTTGAAGCCATTGGAACCGTTTCCAAGAGTAAATCGGGGAAATTGCGGTCCAAGCTCAATTATGAACTTGGTGGGAGATATTTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

177

Amino Acids

19.25

Weight (kDa)

6.88

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	29 - 136	2.7e-31	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AarI	CACCTGC	1 cut(s)	32
Acc36I	ACCTGC	2 cut(s)	32, 159
AccI	GTMKAC	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	6 cut(s)	14, 100, 262, 413, 429, 487
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	5 cut(s)	195, 264, 272, 277, 338
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	67
AcvI	CACGTG	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	162, 372
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	190, 320, 347
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	2 cut(s)	94, 337
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	6 cut(s)	10, 76, 298, 345, 441, 496
AluI	AGCT	6 cut(s)	10, 76, 298, 345, 441, 496
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	5 cut(s)	195, 264, 272, 277, 338
AlwNI	CAGNNNCTG	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	4 cut(s)	102, 177, 192, 426
ApaI	GGGCCC	1 cut(s)	106
ApeKI	GCWGC	6 cut(s)	4, 7, 10, 97, 127, 438
ApoI	RAATTY	1 cut(s)	67
Asp700I	GAANNNNTTC	2 cut(s)	238, 460
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	4 cut(s)	102, 103, 178, 489
AsuHPI	GGTGA	1 cut(s)	13
AsuII	TTCGAA	2 cut(s)	71, 405
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	2 cut(s)	106, 342
BamHI	GGATCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	106
BbrPI	CACGTG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	19, 84, 114, 450
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	2 cut(s)	192, 441
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	2 cut(s)	32, 159
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	9 cut(s)	5, 8, 11, 14, 98, 128, 413, 429, 439
BlsI	GCNGC	9 cut(s)	6, 9, 12, 15, 99, 129, 414, 430, 440
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	489
BmgBI	CACGTC	2 cut(s)	94, 337
BmgT120I	GGNCC	4 cut(s)	102, 103, 178, 489
BmiI	GGNNCC	3 cut(s)	104, 271, 457
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	360
Bpu14I	TTCGAA	2 cut(s)	71, 405
BsaAI	YACGTR	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	162, 372
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	313, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 320, 347
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	190, 320, 347
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	2 cut(s)	106, 342
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	4 cut(s)	19, 84, 114, 450
BseYI	CCCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	4 cut(s)	104, 179, 194, 428
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	5 cut(s)	165, 314, 328, 348, 435
BslFI	GGGAC	2 cut(s)	135, 259
BslI	CCNNNNNNNGG	3 cut(s)	190, 320, 347
BsmFI	GGGAC	2 cut(s)	135, 259
BsnI	GGCC	4 cut(s)	104, 179, 194, 428
Bsp119I	TTCGAA	2 cut(s)	71, 405
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	65, 106, 342
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	54, 187, 264, 269, 330
BspACI	CCGC	6 cut(s)	14, 100, 262, 413, 429, 487
BspANI	GGCC	4 cut(s)	104, 179, 194, 428
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	104, 271, 457
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	2 cut(s)	32, 159
BspPI	GGATC	5 cut(s)	195, 264, 272, 277, 338
BspT104I	TTCGAA	2 cut(s)	71, 405
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	5 cut(s)	54, 187, 264, 269, 330
BssNI	GRCGYC	2 cut(s)	162, 372
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	85, 460
BstACI	GRCGYC	2 cut(s)	162, 372
BstBAI	YACGTR	1 cut(s)	60
BstBI	TTCGAA	2 cut(s)	71, 405
BstC8I	GCNNGC	3 cut(s)	102, 166, 196
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	106
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	5 cut(s)	57, 190, 267, 272, 333
BstMBI	GATC	5 cut(s)	54, 187, 264, 269, 330
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 13, 200, 391, 493
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	2 cut(s)	106, 342
BstV1I	GCAGC	4 cut(s)	19, 84, 114, 450
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BstZI	CGGCCG	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	4 cut(s)	104, 179, 194, 428
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	2 cut(s)	94, 337
BveI	ACCTGC	2 cut(s)	32, 159
Cac8I	GCNNGC	3 cut(s)	102, 166, 196
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	4 cut(s)	102, 103, 178, 489
CseI	GACGC	3 cut(s)	170, 256, 361
Csp6I	GTAC	1 cut(s)	88
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	5 cut(s)	56, 189, 266, 271, 332
DpnII	GATC	5 cut(s)	54, 187, 264, 269, 330
EaeI	YGGCCR	1 cut(s)	426
EagI	CGGCCG	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	489
Eco52I	CGGCCG	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	106
FaiI	YATR	2 cut(s)	381, 504
FaqI	GGGAC	2 cut(s)	135, 259
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 14, 98, 128, 413, 429, 439
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 14, 98, 128, 413, 429, 439
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	9 cut(s)	5, 8, 11, 14, 98, 128, 413, 429, 439
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	104, 179, 194, 428
HapII	CCGG	5 cut(s)	165, 314, 328, 348, 435
HgaI	GACGC	3 cut(s)	170, 256, 361
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	2 cut(s)	162, 372
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaII	CCGG	5 cut(s)	165, 314, 328, 348, 435
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	3 cut(s)	88, 157, 174
Hpy188I	TCNGA	2 cut(s)	117, 269
Hpy188III	TCNNGA	2 cut(s)	211, 328
Hpy8I	GTNNAC	3 cut(s)	88, 157, 174
Hpy99I	CGWCG	7 cut(s)	85, 95, 146, 161, 164, 338, 377
HpyCH4III	ACNGT	2 cut(s)	85, 460
HpyCH4IV	ACGT	4 cut(s)	59, 93, 237, 336
HpyCH4V	TGCA	4 cut(s)	7, 198, 223, 423
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 13, 200, 391, 493
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	4 cut(s)	59, 93, 237, 336
Hsp92I	GRCGYC	2 cut(s)	162, 372
HspAI	GCGC	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	54, 187, 264, 269, 330
LmnI	GCTCC	3 cut(s)	51, 295, 350
Lsp1109I	GCAGC	4 cut(s)	19, 84, 114, 450
LweI	GCATC	1 cut(s)	360
MaeII	ACGT	4 cut(s)	59, 93, 237, 336
MalI	GATC	5 cut(s)	56, 189, 266, 271, 332
MboI	GATC	5 cut(s)	54, 187, 264, 269, 330
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	3 cut(s)	65, 106, 342
MluCI	AATT	3 cut(s)	67, 482, 499
MnlI	CCTC	5 cut(s)	44, 47, 145, 314, 442
MroI	TCCGGA	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	2 cut(s)	238, 460
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	5 cut(s)	165, 314, 328, 348, 435
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	5 cut(s)	10, 13, 200, 391, 493
NaeI	GCCGGC	1 cut(s)	166
NdeII	GATC	5 cut(s)	54, 187, 264, 269, 330
NgoMIV	GCCGGC	1 cut(s)	164
NlaIV	GGNNCC	3 cut(s)	104, 271, 457
NspV	TTCGAA	2 cut(s)	71, 405
PaqCI	CACCTGC	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	5 cut(s)	77, 147, 156, 234, 369
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	238, 460
PkrI	GCNGC	9 cut(s)	6, 9, 12, 15, 99, 129, 414, 430, 440
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	104, 271, 457
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	4 cut(s)	102, 103, 178, 489
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	9 cut(s)	5, 8, 11, 14, 98, 128, 413, 429, 439
Sau3AI	GATC	5 cut(s)	54, 187, 264, 269, 330
Sau96I	GGNCC	4 cut(s)	102, 103, 178, 489
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	65, 106, 342
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	5
SfuI	TTCGAA	2 cut(s)	71, 405
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	3 cut(s)	67, 482, 499
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	6 cut(s)	14, 100, 262, 413, 429, 487
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	85, 460
TaiI	ACGT	4 cut(s)	62, 96, 240, 339
TaqI	TCGA	9 cut(s)	65, 71, 144, 150, 156, 210, 333, 363, 405
TasI	AATT	3 cut(s)	67, 482, 499
TauI	GCSGC	3 cut(s)	16, 415, 431
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	6 cut(s)	4, 7, 10, 97, 127, 438
TspDTI	ATGAA	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	238, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.