Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

10489401 .. 10500152

Gene Structure 10752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCACTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATCGACGCCATGGCCGGAGCATCGCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGAAGGAGGAGGAAGCATCTATGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACTATTCCAGCGGCGAATTCCGGGTGTTTCTACCCCAGCCTTGCTGCGCCAAGTTCGAGAATCAGGTCCGGTCCGGATTTGGTCGAACTGCATACCCATCTCTGCATGCACGACCACCACTACAATTCTGCAGCGTGGTGGTTGTCACATCTGATACATGGTGTGTCAGCATGCTGTCTGATATGGATAATCGTGTATCTGAAATACAAAGACTGGTTGATGTAATTCAGGTCATTGGTGTCAAGAACGCTGCGGATATTGCCACTACCGCTAAACGAGTTCGCGAGCTAAGTCAGTCTGTGAACAATCGAGCAGATGAACTTGAGGAACGTATAAACAGGGGCAGGGAAAAGGCGAGGCAAGAAACCGAGTATATACGGAATCTTATAATCAAGGACGAGGAAAGAGTGAGGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

212

Amino Acids

23.38

Weight (kDa)

7.65

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 94	1.5e-10	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccII	CGCG	1 cut(s)	501
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	3 cut(s)	228, 470, 486
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	24
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	3 cut(s)	78, 93, 181
ApeKI	GCWGC	4 cut(s)	62, 261, 348, 467
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	94, 283, 288
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	283, 288
BbvI	GCAGC	4 cut(s)	49, 248, 360, 454
BccI	CCATC	2 cut(s)	185, 322
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	346
BisI	GCNGC	5 cut(s)	63, 229, 262, 349, 468
BlsI	GCNGC	5 cut(s)	64, 230, 263, 350, 469
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	283, 288
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	94, 283, 288
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	95, 129, 153, 207
BmuI	ACTGGG	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaWI	WCCGGW	2 cut(s)	285, 290
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	12, 105, 435
BseAI	TCCGGA	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	31, 75
BseNI	ACTGG	3 cut(s)	12, 105, 435
BseRI	GAGGAG	3 cut(s)	44, 150, 176
BseXI	GCAGC	4 cut(s)	49, 248, 360, 454
BseYI	CCCAGC	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	80, 95, 183
BsiEI	CGRYCG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	6 cut(s)	81, 92, 160, 238, 286, 291
BsnI	GGCC	3 cut(s)	80, 95, 183
BsoBI	CYCGRG	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	66, 151
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	3 cut(s)	228, 470, 486
BspANI	GGCC	3 cut(s)	80, 95, 183
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	12, 105, 435
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	2 cut(s)	66, 151
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	93, 324, 389, 503
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	69, 154
BstMBI	GATC	2 cut(s)	66, 151
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 92, 476, 485
BstNSI	RCATGY	2 cut(s)	326, 391
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	4 cut(s)	49, 248, 360, 454
BsuRI	GGCC	3 cut(s)	80, 95, 183
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	4 cut(s)	93, 324, 389, 503
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	94, 283, 288
CpoI	CGGWCCG	1 cut(s)	288
CseI	GACGC	1 cut(s)	80
CspI	CGGWCCG	1 cut(s)	288
CviAII	CATG	4 cut(s)	76, 323, 375, 388
CviJI	RGCY	6 cut(s)	39, 80, 95, 183, 256, 505
CviKI_1	RGCY	6 cut(s)	39, 80, 95, 183, 256, 505
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	2 cut(s)	68, 153
DpnII	GATC	2 cut(s)	66, 151
EaeI	YGGCCR	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	283, 288
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	79, 326, 378, 391
FatI	CATG	4 cut(s)	75, 322, 374, 387
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	63, 229, 262, 349, 468
Fsp4HI	GCNGC	5 cut(s)	63, 229, 262, 349, 468
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	5 cut(s)	63, 229, 262, 349, 468
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	80, 95, 183
HapII	CCGG	6 cut(s)	81, 92, 160, 238, 286, 291
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	79, 326, 378, 391
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	277, 598
HpaII	CCGG	6 cut(s)	81, 92, 160, 238, 286, 291
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	125, 370, 397, 418
Hpy188III	TCNNGA	4 cut(s)	274, 291, 460, 500
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	16, 308, 322, 326, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 92, 476, 485
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	547
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	79, 326, 378, 391
HspAI	GCGC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	66, 151
LmnI	GCTCC	2 cut(s)	57, 83
Lsp1109I	GCAGC	4 cut(s)	49, 248, 360, 454
LweI	GCATC	4 cut(s)	95, 129, 153, 207
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	107, 171, 361
MalI	GATC	2 cut(s)	68, 153
MboI	GATC	2 cut(s)	66, 151
MboII	GAAGA	2 cut(s)	38, 140
MluCI	AATT	3 cut(s)	233, 341, 441
MroI	TCCGGA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	6 cut(s)	81, 92, 160, 238, 286, 291
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	71, 92, 476, 485
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	66, 151
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	4 cut(s)	79, 326, 378, 391
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	501
NspI	RCATGY	2 cut(s)	326, 391
PaeI	GCATGC	2 cut(s)	326, 391
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	277, 598
PkrI	GCNGC	5 cut(s)	64, 230, 263, 350, 469
Ple19I	CGATCG	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	605
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	94, 283, 288
PstI	CTGCAG	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	501
Rsr2I	CGGWCCG	1 cut(s)	288
RsrII	CGGWCCG	1 cut(s)	288
SatI	GCNGC	5 cut(s)	63, 229, 262, 349, 468
Sau3AI	GATC	2 cut(s)	66, 151
Sau96I	GGNCC	3 cut(s)	94, 283, 288
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	5 cut(s)	159, 285, 450, 507, 550
SfaNI	GCATC	4 cut(s)	95, 129, 153, 207
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	283, 288
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SphI	GCATGC	2 cut(s)	326, 391
Sse9I	AATT	3 cut(s)	233, 341, 441
SsiI	CCGC	3 cut(s)	228, 470, 486
SspI	AATATT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	5 cut(s)	69, 216, 273, 301, 526
TasI	AATT	3 cut(s)	233, 341, 441
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	277, 598
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	62, 261, 348, 467
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	2 cut(s)	218, 610
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	283, 288
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	326, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.