Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

32996883 .. 33000011

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1263600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTTCTTTCCCCAAATCCCTAAATTCTGAAACATGGGTTTTGATCCTCTGCGTCGTGGTCGTGGCGCTCCTCCTCCCCCTCCCTACCAGCCGATCTTCGTCGTCGAGCATCTACGACCACCTGCGGAAGCAGGGCTTGCCGATCGGCCTTCTCCCCAAAGGCATAACCGACTATTCTCTCAACGGCACCACCGGCGAATTCCGAGTGTTGCTAGAGCAGCCCTGCCACGCCAAGTTCGAGAGCCAGGTGCTCTACGATTTTAACGTTTCCGGCTTTCTGTCTTTCGGACGAATCGCCAACTTATCGGGCGTGTCGGCTCAGGAGCTCTTCCTCTGGTTTCCTGTGAAGGGGATCAGAGTCGATGTACCAAGTTCCGGCCTCATTTACTTCGACGTCGGCGTCGTCGACAAGCAGTTCTCTTTGTCCCTCTTCGAATCGCCACCTGATTGCACCGCCGTTGACCCTTCTGATCCCAACTTCAATCCTGCCGCCCAGGACACCAACCACTATTCCTCTTCCCCATCTGGGTCGTCGTCGTTTGAGAATGAATCACTGAATCTTGGGTATGGAGGTGGTCGGAGAAGTGAGCTGAGGGCTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

203

Amino Acids

21.89

Weight (kDa)

4.97

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	38 - 146	1.4e-32	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
AasI	GACNNNNNNGTC	1 cut(s)	401
AatII	GACGTC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	3 cut(s)	127, 456, 492
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	3 cut(s)	40, 362, 467
AcsI	RAATTY	2 cut(s)	25, 200
AcyI	GRCGYC	2 cut(s)	396, 402
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	3 cut(s)	350, 377, 528
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	246, 495
AluBI	AGCT	2 cut(s)	328, 592
AluI	AGCT	2 cut(s)	328, 592
Alw21I	GWGCWC	2 cut(s)	255, 330
AlwI	GGATC	3 cut(s)	40, 362, 467
AoxI	GGCC	2 cut(s)	148, 379
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	25, 200
AspLEI	GCGC	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	255, 330
BbvCI	CCTCAGC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	532
BceAI	ACGGC	2 cut(s)	202, 443
BciT130I	CCWGG	2 cut(s)	248, 497
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	221, 492
BlsI	GCNGC	2 cut(s)	222, 493
Bme1390I	CCNGG	2 cut(s)	248, 497
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	248, 497
BmsI	GCATC	1 cut(s)	120
Bpu10I	CCTNAGC	2 cut(s)	321, 593
Bpu14I	TTCGAA	1 cut(s)	435
BsaHI	GRCGYC	2 cut(s)	396, 402
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 377, 528
Bse118I	RCCGGY	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	248, 497
BseDI	CCNNGG	1 cut(s)	495
BseLI	CCNNNNNNNGG	3 cut(s)	350, 377, 528
BseMII	CTCAG	2 cut(s)	335, 584
BseRI	GAGGAG	2 cut(s)	62, 65
BseXI	GCAGC	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	150, 381
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	255, 330
BsiSI	CCGG	3 cut(s)	195, 273, 378
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	350, 377, 528
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	150, 381
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	255, 330
Bsp143I	GATC	5 cut(s)	45, 95, 144, 354, 472
BspACI	CCGC	3 cut(s)	127, 456, 492
BspANI	GGCC	2 cut(s)	150, 381
BspCNI	CTCAG	2 cut(s)	334, 585
BspLI	GGNNCC	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	40, 362, 467
BspQI	GCTCTTC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	5 cut(s)	45, 95, 144, 354, 472
BssNI	GRCGYC	2 cut(s)	396, 402
Bst2UI	CCWGG	2 cut(s)	248, 497
Bst6I	CTCTTC	3 cut(s)	335, 437, 523
BstACI	GRCGYC	2 cut(s)	396, 402
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	321, 593, 606
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	5 cut(s)	48, 98, 147, 357, 475
BstMBI	GATC	5 cut(s)	45, 95, 144, 354, 472
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 195, 220
BstNI	CCWGG	2 cut(s)	248, 497
BstSCI	CCNGG	2 cut(s)	246, 495
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	150, 381
BtsIMutI	CAGTG	1 cut(s)	554
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	2 cut(s)	43, 391
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	1 cut(s)	36
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	321, 593, 606
DpnI	GATC	5 cut(s)	47, 97, 146, 356, 474
DpnII	GATC	5 cut(s)	45, 95, 144, 354, 472
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	3 cut(s)	335, 437, 523
EarI	CTCTTC	3 cut(s)	335, 437, 523
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	246, 495
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	1 cut(s)	39
FaiI	YATR	3 cut(s)	37, 167, 570
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	221, 492
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	221, 492
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	221, 492
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	150, 381
HapII	CCGG	3 cut(s)	195, 273, 378
HgaI	GACGC	2 cut(s)	43, 391
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	396, 402
Hin1II	CATG	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	409, 463
HindII	GTYRAC	2 cut(s)	409, 463
HinfI	GANTC	6 cut(s)	294, 360, 437, 551, 559, 602
HpaII	CCGG	3 cut(s)	195, 273, 378
Hpy166II	GTNNAC	2 cut(s)	409, 463
Hpy188I	TCNGA	6 cut(s)	31, 206, 290, 359, 472, 582
Hpy188III	TCNNGA	2 cut(s)	241, 323
Hpy8I	GTNNAC	2 cut(s)	409, 463
Hpy99I	CGWCG	9 cut(s)	59, 106, 109, 398, 401, 407, 410, 538, 541
HpyAV	CCTTC	3 cut(s)	161, 343, 477
HpyCH4IV	ACGT	2 cut(s)	267, 396
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 195, 220
HpyF3I	CTNAG	3 cut(s)	321, 593, 606
HpySE526I	ACGT	2 cut(s)	267, 396
Hsp92I	GRCGYC	2 cut(s)	396, 402
Hsp92II	CATG	1 cut(s)	39
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	45, 95, 144, 354, 472
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	75, 325
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	267, 396
MalI	GATC	5 cut(s)	47, 97, 146, 356, 474
MboI	GATC	5 cut(s)	45, 95, 144, 354, 472
MboII	GAAGA	4 cut(s)	90, 322, 424, 510
MhlI	GDGCHC	2 cut(s)	255, 330
MluCI	AATT	2 cut(s)	25, 200
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	560
MseI	TTAA	1 cut(s)	264
MspI	CCGG	3 cut(s)	195, 273, 378
MspR9I	CCNGG	2 cut(s)	248, 497
MvaI	CCWGG	2 cut(s)	248, 497
MwoI	GCNNNNNNNGC	3 cut(s)	139, 195, 220
NdeII	GATC	5 cut(s)	45, 95, 144, 354, 472
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	435
PaqCI	CACCTGC	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	5 cut(s)	237, 264, 399, 402, 405
PfeI	GAWTC	5 cut(s)	294, 437, 551, 559, 602
PkrI	GCNGC	2 cut(s)	222, 493
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	246, 495
PspGI	CCWGG	2 cut(s)	246, 495
PspN4I	GGNNCC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	221, 492
Sau3AI	GATC	5 cut(s)	45, 95, 144, 354, 472
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	248, 497
SduI	GDGCHC	2 cut(s)	255, 330
SetI	ASST	8 cut(s)	126, 252, 270, 330, 399, 448, 577, 594
SfaNI	GCATC	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	25, 200
SsiI	CCGC	3 cut(s)	127, 456, 492
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	246, 495
TaiI	ACGT	2 cut(s)	270, 399
TaqI	TCGA	6 cut(s)	107, 240, 363, 393, 408, 435
TasI	AATT	2 cut(s)	25, 200
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	5 cut(s)	294, 437, 551, 559, 602
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	561
XapI	RAATTY	2 cut(s)	25, 200
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.