RLG00000034677

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000944
Physical Location & Seq
Forward (+)
48086979 .. 48087887
909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034677

Sequence Viewer

Length: 408 bp
ATGCATCCTTGGTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATTGGCGACGTGGCAGGAGCATTGCCGGCCCCAAAATCTAGTAACAAAACAAGCATAGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGTCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGTGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGTGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAAGGTCTCTAGGACTCTCACTTTCGGCCGAATCGCTGACTTATCAAGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCTGGTGAAAGGTATCCGAGTCGATGTGCCCAGCTCCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

136

Amino Acids

14.6

Weight (kDa)

8.79

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 46 - 131 2.5e-23 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 344
AciI CCGC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 67
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 298, 343
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 84, 172, 313
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 85, 274
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 137, 382
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 237
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 298, 343
BfaI CTAG 2 cut(s) 96, 297
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 85, 274
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 3 cut(s) 13, 144, 198
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 8, 22
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 8, 22
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 4 cut(s) 35, 138, 141, 167
BseSI GKGCMC 1 cut(s) 396
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 2 cut(s) 243, 395
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 3 cut(s) 86, 174, 315
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 4 cut(s) 83, 229, 277, 402
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 298, 343
BsmBI CGTCTC 1 cut(s) 343
BsnI GGCC 3 cut(s) 86, 174, 315
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 342
BspANI GGCC 3 cut(s) 86, 174, 315
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 8, 22
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 345
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 298, 343
BstMBI GATC 1 cut(s) 142
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 313
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 3 cut(s) 86, 174, 315
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 85, 274
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 7 cut(s) 30, 86, 174, 247, 315, 399, 405
CviKI_1 RGCY 7 cut(s) 30, 86, 174, 247, 315, 399, 405
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 313
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 274
Eco52I CGGCCG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 343
FaiI YATR 2 cut(s) 113, 159
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 96, 297
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 2 cut(s) 247, 399
HaeIII GGCC 3 cut(s) 86, 174, 315
HapII CCGG 4 cut(s) 83, 229, 277, 402
HgaI GACGC 1 cut(s) 325
HinfI GANTC 5 cut(s) 212, 268, 301, 318, 384
HpaII CCGG 4 cut(s) 83, 229, 277, 402
HphI GGTGA 2 cut(s) 137, 382
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 2 cut(s) 265, 347
Hpy99I CGWCG 2 cut(s) 68, 212
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 66
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 3 cut(s) 48, 74, 404
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 3 cut(s) 13, 144, 198
MaeI CTAG 2 cut(s) 96, 297
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 98, 162
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 344
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 29, 346
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 1 cut(s) 224
MlyI GAGTC 2 cut(s) 295, 393
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 82
MspI CCGG 4 cut(s) 83, 229, 277, 402
MspR9I CCNGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 87
NsiI ATGCAT 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 212, 268, 318
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 295, 392
PpsI GAGTC 2 cut(s) 295, 392
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 2 cut(s) 243, 395
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 85, 274
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 85, 274
SchI GAGTC 2 cut(s) 295, 393
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 396
SetI ASST 6 cut(s) 69, 150, 276, 294, 379, 401
SfaNI GCATC 3 cut(s) 13, 144, 198
SinI GGWCC 1 cut(s) 274
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 342
SspI AATATT 1 cut(s) 200
SspMI CTAG 2 cut(s) 96, 297
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 207, 264, 387
TasI AATT 1 cut(s) 224
TfiI GAWTC 3 cut(s) 212, 268, 318
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 53
TspGWI ACGGA 2 cut(s) 140, 209
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 96, 297
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.