Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000189.1

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

160524 .. 161684

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000189.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgcagacgccagctggagcttcctcattcgtccgtgcgctccagtctccctcttctccgcgtttgtctttgcgccctgacgtcagccacgttctctccacttccgacgtggcagttgggcctctccttcgactggtcaagaaattagtcagggctttgccctttttcttcccctgggtcatcaaaagccaagttttggctggtcaaattaggtcccgtggaagagcaaaattgggtgtgcctggtcaaaacgagaccgctgcacttgctctaagtcactggccagttaaggatgatcttttcttgctgtgtagatgtcaaggtcaaagagtcatgggtttgaagaacgctgcggatattgccactaacgctaaacgagttgacaagctaggtcagtctgtgaacaatccagcagatgaacttgcgaaacatatggaggaggacagggaaagggcgaagcaagaaagcaagcttattctgaatcgtataatcaaggacgaggaaagggcgaggaaagaagcggagcgtattttgaatcgtataaacgaggacgtggaaagggcgaaggaagaagccaagcaacgcgctcgtgctgtagaaaaagaaattatactggttaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.16

Weight (kDa)

10.0

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccII	CGCG	2 cut(s)	61, 585
AciI	CCGC	4 cut(s)	59, 258, 353, 521
AcoI	YGGCCR	1 cut(s)	281
AcyI	GRCGYC	2 cut(s)	8, 81
AfiI	CCNNNNNNNGG	2 cut(s)	133, 196
AgsI	TTSAA	2 cut(s)	343, 535
AjiI	CACGTC	2 cut(s)	109, 553
AjnI	CCWGG	2 cut(s)	173, 241
AluBI	AGCT	4 cut(s)	14, 20, 388, 472
AluI	AGCT	4 cut(s)	14, 20, 388, 472
Alw26I	GTCTC	2 cut(s)	51, 248
AoxI	GGCC	2 cut(s)	119, 281
ApeKI	GCWGC	2 cut(s)	260, 350
AspLEI	GCGC	3 cut(s)	40, 75, 587
AspS9I	GGNCC	2 cut(s)	119, 213
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	283
BauI	CACGAG	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	247, 337
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 569, 603
BciT130I	CCWGG	2 cut(s)	175, 243
BcoDI	GTCTC	2 cut(s)	51, 248
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	2 cut(s)	261, 351
BlsI	GCNGC	2 cut(s)	262, 352
Bme1390I	CCNGG	2 cut(s)	175, 243
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	2 cut(s)	109, 553
BmgT120I	GGNCC	2 cut(s)	119, 213
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	175, 243
BpmI	CTGGAG	2 cut(s)	26, 36
BsaHI	GRCGYC	2 cut(s)	8, 81
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	173, 174, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 196
Bse1I	ACTGG	5 cut(s)	43, 138, 284, 284, 618
BseBI	CCWGG	2 cut(s)	175, 243
BseDI	CCNNGG	3 cut(s)	173, 174, 217
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	133, 196
BseNI	ACTGG	5 cut(s)	43, 138, 284, 284, 618
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	247, 337
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	61, 585
BshFI	GGCC	2 cut(s)	121, 283
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	133, 196
BsmAI	GTCTC	2 cut(s)	51, 248
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	121, 283
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	4 cut(s)	59, 258, 353, 521
BspANI	GGCC	2 cut(s)	121, 283
BspFNI	CGCG	2 cut(s)	61, 585
BspLI	GGNNCC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	5 cut(s)	43, 138, 284, 284, 618
BssECI	CCNNGG	3 cut(s)	173, 174, 217
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	2 cut(s)	8, 81
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	175, 243
Bst6I	CTCTTC	2 cut(s)	58, 217
BstACI	GRCGYC	2 cut(s)	8, 81
BstC8I	GCNNGC	2 cut(s)	12, 470
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	2 cut(s)	61, 585
BstHHI	GCGC	3 cut(s)	40, 75, 587
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	51, 248
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 359, 368
BstNI	CCWGG	2 cut(s)	175, 243
BstSCI	CCNGG	2 cut(s)	173, 241
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	2 cut(s)	61, 585
BstV1I	GCAGC	2 cut(s)	247, 337
BsuRI	GGCC	2 cut(s)	121, 283
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	2 cut(s)	109, 553
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	12, 470
CfoI	GCGC	3 cut(s)	40, 75, 587
Cfr13I	GGNCC	2 cut(s)	119, 213
CseI	GACGC	1 cut(s)	16
CviAII	CATG	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	58, 217
EarI	CTCTTC	2 cut(s)	58, 217
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	173, 241
FaeI	CATG	1 cut(s)	337
FaiI	YATR	6 cut(s)	335, 432, 434, 488, 542, 611
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	333
FauNDI	CATATG	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	261, 351
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	261, 351
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	3 cut(s)	39, 74, 586
GluI	GCNGC	2 cut(s)	261, 351
GsuI	CTGGAG	2 cut(s)	26, 36
HaeIII	GGCC	2 cut(s)	121, 283
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	40, 75, 587
Hin1I	GRCGYC	2 cut(s)	8, 81
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	3 cut(s)	38, 73, 585
HinP1I	GCGC	3 cut(s)	38, 73, 585
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	330, 481, 535
Hpy166II	GTNNAC	2 cut(s)	382, 403
Hpy188I	TCNGA	2 cut(s)	106, 480
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	382, 403
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	137, 559
HpyCH4IV	ACGT	4 cut(s)	81, 90, 108, 552
HpyCH4V	TGCA	2 cut(s)	4, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 359, 368
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	4 cut(s)	81, 90, 108, 552
Hsp92I	GRCGYC	2 cut(s)	8, 81
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	3 cut(s)	38, 73, 585
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	3 cut(s)	17, 45, 523
Lsp1109I	GCAGC	2 cut(s)	247, 337
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	4 cut(s)	81, 90, 108, 552
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	45, 160, 234, 355, 581
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	5 cut(s)	143, 207, 230, 606, 619
MluNI	TGGCCA	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	34, 61, 132, 430, 433, 493, 504, 541
Mox20I	TGGCCA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	2 cut(s)	288, 618
Msp20I	TGGCCA	1 cut(s)	283
MspA1I	CMGCKG	2 cut(s)	14, 260
MspR9I	CCNGG	2 cut(s)	175, 243
MvaI	CCWGG	2 cut(s)	175, 243
MvnI	CGCG	2 cut(s)	61, 585
MwoI	GCNNNNNNNGC	3 cut(s)	266, 359, 368
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	275
PasI	CCCWGGG	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	481, 535
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	262, 352
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	173, 241
PspGI	CCWGG	2 cut(s)	173, 241
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	119, 213
PspPPI	RGGWCCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	288, 618
SatI	GCNGC	2 cut(s)	261, 351
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	119, 213
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	175, 243
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	5 cut(s)	143, 207, 230, 606, 619
SsiI	CCGC	4 cut(s)	59, 258, 353, 521
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	173, 241
TaiI	ACGT	4 cut(s)	84, 93, 111, 555
TaqI	TCGA	1 cut(s)	130
TasI	AATT	5 cut(s)	143, 207, 230, 606, 619
TfiI	GAWTC	2 cut(s)	481, 535
Tru1I	TTAA	2 cut(s)	288, 618
Tru9I	TTAA	2 cut(s)	288, 618
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	260, 350
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	2 cut(s)	106, 197
XspI	CTAG	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.