Rorug02G0603900

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000944
Physical Location & Seq
Forward (+)
72209230 .. 72209505
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0603900.1

Sequence Viewer

Length: 276 bp
ATGTTCAGCGCCGCTGAGAGCAGGAGGACCTCGGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCCATGGAAGGGGTGCCGAGCTTTCGGGCCGAGTGTGTGGGGTTCTTTGCTGGAGATGTGAAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGGCCAGGCCAGGACTATATCGGAGGTGGTGCCGGTGGACGAGTATTATTGGAATGCGATGGTGATGGAATTGACGAATCGAAATAGTGATGGCAGATGGAGGGAGACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

91

Amino Acids

10.58

Weight (kDa)

4.69

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 82, 190
AciI CCGC 2 cut(s) 12, 156
AcoI YGGCCR 2 cut(s) 69, 163
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 78
AjnI CCWGG 2 cut(s) 165, 170
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 51, 260
AoxI GGCC 4 cut(s) 69, 96, 163, 168
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 27, 96
AsuHPI GGTGA 2 cut(s) 160, 235
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 2 cut(s) 82, 190
BccI CCATC 5 cut(s) 145, 214, 220, 245, 252
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 167, 172
BcoDI GTCTC 2 cut(s) 51, 260
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 167, 172
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 27, 96
BmiI GGNNCC 2 cut(s) 84, 192
BmrFI CCNGG 2 cut(s) 167, 172
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 30, 72
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 193
BseBI CCWGG 2 cut(s) 167, 172
BseDI CCNNGG 2 cut(s) 30, 72
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 6
BshFI GGCC 4 cut(s) 71, 98, 165, 170
BshNI GGYRCC 2 cut(s) 82, 190
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 51, 260
BsmBI CGTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 4 cut(s) 71, 98, 165, 170
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 2 cut(s) 12, 156
BspANI GGCC 4 cut(s) 71, 98, 165, 170
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 84, 192
BspT107I GGYRCC 2 cut(s) 82, 190
BsrFI RCCGGY 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 30, 72
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 167, 172
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMAI GTCTC 2 cut(s) 51, 260
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 2 cut(s) 167, 172
BstSCI CCNGG 2 cut(s) 165, 170
BsuRI GGCC 4 cut(s) 71, 98, 165, 170
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 233
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 27, 96
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 71, 90, 98, 165, 170
CviKI_1 RGCY 5 cut(s) 71, 90, 98, 165, 170
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 15
EaeI YGGCCR 2 cut(s) 69, 163
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 165, 170
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 45, 50, 52, 74, 179
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 4 cut(s) 71, 98, 165, 170
HapII CCGG 1 cut(s) 194
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 160, 235
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 71, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 7, 105, 152, 157, 179, 184, 207, 255
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 6 cut(s) 18, 33, 40, 129, 178, 255
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 167, 172
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 2 cut(s) 167, 172
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 84, 192
NmeAIII GCCGAG 2 cut(s) 111, 124
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 165, 170
PspGI CCWGG 2 cut(s) 165, 170
PspN4I GGNNCC 2 cut(s) 84, 192
PspPI GGNCC 2 cut(s) 27, 96
PspPPI RGGWCCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 27, 96
ScrFI CCNGG 2 cut(s) 167, 172
SetI ASST 5 cut(s) 32, 44, 92, 189, 274
SinI GGWCC 1 cut(s) 27
Sse9I AATT 1 cut(s) 230
SsiI CCGC 2 cut(s) 12, 156
StyD4I CCNGG 2 cut(s) 165, 170
StyI CCWWGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 241
TasI AATT 1 cut(s) 230
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.