Rh6AG262100

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000944
Physical Location & Seq
Forward (+)
45349788 .. 45350300
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG262100.1

Sequence Viewer

Length: 513 bp
ATGTTGCTACTACAGTTCACTTCCAACTCCATACCCTTTCTCTGCTTCCTCTTATTGCTCCCGATCATGACCATTAGCTCCGATTCGTCGGTCTACGACGCCCTCCTGGCCCACGGCCTTCCGATGGGGCTGCTGCCTAAGGGTGTGACTCAGTTCGAAATCGACGAGGGCGGCCGGTTCCAGGTGTACCTGGATCAGGCCTGCAATGCCAAGTTCGAGAGTGAGTTGCATTACGACAGGAACGTGTCTGGGACTCTCAGTTACGGCCGGATCGGAGCCTTGTCGGGTATTTCGGCCCAGGAGCTCTTTCTCTGGTTTCCGGTCAAGGGTATTCGGGTCGATGTCCCCAGCTCCGGCATCATTTACTTCGATGTCGGCGTTGTTTTTAAGCAATTCTCGCTTTCGCTATTCGAAACACCGCCGGATTGTACTGCTGCCACCCCCGCCGCCCAAGCTGATGTCGACGGCGGCGGCAGGCTCATCGTTGACACCGTTTCCAAGGTCAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

170

Amino Acids

18.37

Weight (kDa)

4.59

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 31 - 138 5.3e-32 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 93, 462
AciI CCGC 6 cut(s) 171, 419, 444, 447, 468, 471
AclWI GGATC 2 cut(s) 201, 278
AcoI YGGCCR 2 cut(s) 172, 265
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 2 cut(s) 188, 430
AfiI CCNNNNNNNGG 5 cut(s) 124, 181, 196, 326, 353
AflIII ACRYGT 1 cut(s) 243
AjnI CCWGG 4 cut(s) 105, 180, 189, 297
AluBI AGCT 4 cut(s) 78, 304, 351, 455
AluI AGCT 4 cut(s) 78, 304, 351, 455
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 2 cut(s) 201, 278
AoxI GGCC 6 cut(s) 108, 115, 172, 198, 265, 294
ApeKI GCWGC 3 cut(s) 130, 133, 434
AspS9I GGNCC 2 cut(s) 109, 295
AsuII TTCGAA 2 cut(s) 156, 411
AxyI CCTNAGG 1 cut(s) 138
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 117, 120, 421
BccI CCATC 1 cut(s) 118
BceAI ACGGC 3 cut(s) 130, 280, 481
BcgI CGANNNNNNTGC 4 cut(s) 112, 146, 463, 497
BciT130I CCWGG 4 cut(s) 107, 182, 191, 299
BfmI CTRYAG 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 7 cut(s) 131, 134, 172, 435, 447, 469, 472
BlsI GCNGC 7 cut(s) 132, 135, 173, 436, 448, 470, 473
Bme1390I CCNGG 4 cut(s) 107, 182, 191, 299
BmgT120I GGNCC 2 cut(s) 109, 295
BmiI GGNNCC 2 cut(s) 179, 277
BmrFI CCNGG 4 cut(s) 107, 182, 191, 299
BmsI GCATC 1 cut(s) 366
Bpu14I TTCGAA 2 cut(s) 156, 411
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 112, 297, 498
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 181, 196, 326, 353
Bse118I RCCGGY 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 4 cut(s) 107, 182, 191, 299
BseDI CCNNGG 3 cut(s) 112, 297, 498
BseLI CCNNNNNNNGG 5 cut(s) 124, 181, 196, 326, 353
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 164, 271
BseX3I CGGCCG 2 cut(s) 172, 265
BseXI GCAGC 3 cut(s) 117, 120, 421
BseYI CCCAGC 1 cut(s) 347
Bsh1285I CGRYCG 2 cut(s) 175, 268
BshFI GGCC 6 cut(s) 110, 117, 174, 200, 267, 296
BsiEI CGRYCG 2 cut(s) 175, 268
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 5 cut(s) 175, 268, 320, 354, 422
BslFI GGGAC 2 cut(s) 265, 329
BslI CCNNNNNNNGG 5 cut(s) 124, 181, 196, 326, 353
BsmFI GGGAC 2 cut(s) 265, 329
BsnI GGCC 6 cut(s) 110, 117, 174, 200, 267, 296
Bsp119I TTCGAA 2 cut(s) 156, 411
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 63, 193, 270
BspACI CCGC 6 cut(s) 171, 419, 444, 447, 468, 471
BspANI GGCC 6 cut(s) 110, 117, 174, 200, 267, 296
BspCNI CTCAG 2 cut(s) 163, 270
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 179, 277
BspPI GGATC 2 cut(s) 201, 278
BspT104I TTCGAA 2 cut(s) 156, 411
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 112, 297, 498
BssMI GATC 3 cut(s) 63, 193, 270
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 4 cut(s) 107, 182, 191, 299
Bst4CI ACNGT 2 cut(s) 15, 493
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 2 cut(s) 156, 411
BstC8I GCNNGC 2 cut(s) 202, 476
BstDEI CTNAG 3 cut(s) 138, 150, 257
BstDSI CCRYGG 1 cut(s) 112
BstENI CCTNNNNNAGG 1 cut(s) 194
BstKTI GATC 3 cut(s) 66, 196, 273
BstMBI GATC 3 cut(s) 63, 193, 270
BstMCI CGRYCG 2 cut(s) 175, 268
BstMWI GCNNNNNNNGC 5 cut(s) 107, 206, 397, 443, 452
BstNI CCWGG 4 cut(s) 107, 182, 191, 299
BstSCI CCNGG 4 cut(s) 105, 180, 189, 297
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 117, 120, 421
BstZI CGGCCG 2 cut(s) 172, 265
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 6 cut(s) 110, 117, 174, 200, 267, 296
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 202, 476
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 109, 295
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 187, 429
CviAII CATG 1 cut(s) 67
CviQI GTAC 2 cut(s) 187, 429
DdeI CTNAG 3 cut(s) 138, 150, 257
DpnI GATC 3 cut(s) 65, 195, 272
DpnII GATC 3 cut(s) 63, 193, 270
EaeI YGGCCR 2 cut(s) 172, 265
EagI CGGCCG 2 cut(s) 172, 265
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 2 cut(s) 172, 265
Eco130I CCWWGG 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 306
Eco52I CGGCCG 2 cut(s) 172, 265
Eco53kI GAGCTC 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 4 cut(s) 105, 180, 189, 297
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 32, 68
FaqI GGGAC 2 cut(s) 265, 329
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 451
FblI GTMKAC 2 cut(s) 93, 462
Fnu4HI GCNGC 7 cut(s) 131, 134, 172, 435, 447, 469, 472
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 7 cut(s) 131, 134, 172, 435, 447, 469, 472
GluI GCNGC 7 cut(s) 131, 134, 172, 435, 447, 469, 472
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 6 cut(s) 110, 117, 174, 200, 267, 296
HapII CCGG 5 cut(s) 175, 268, 320, 354, 422
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 2 cut(s) 463, 487
HindII GTYRAC 2 cut(s) 463, 487
HinfI GANTC 3 cut(s) 83, 148, 253
HpaII CCGG 5 cut(s) 175, 268, 320, 354, 422
Hpy166II GTNNAC 5 cut(s) 18, 94, 187, 463, 487
Hpy188I TCNGA 3 cut(s) 82, 123, 275
Hpy188III TCNNGA 3 cut(s) 61, 67, 217
Hpy8I GTNNAC 5 cut(s) 18, 94, 187, 463, 487
Hpy99I CGWCG 4 cut(s) 91, 101, 167, 467
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 15, 493
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 204, 229
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 206, 397, 443, 452
HpyF3I CTNAG 3 cut(s) 138, 150, 257
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 3 cut(s) 63, 193, 270
LmnI GCTCC 5 cut(s) 63, 83, 275, 301, 356
Lsp1109I GCAGC 3 cut(s) 117, 120, 421
LweI GCATC 1 cut(s) 366
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 145, 260
MalI GATC 3 cut(s) 65, 195, 272
MboI GATC 3 cut(s) 63, 193, 270
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 392
MlyI GAGTC 2 cut(s) 142, 247
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 59, 113, 160
MseI TTAA 1 cut(s) 387
MspI CCGG 5 cut(s) 175, 268, 320, 354, 422
MspR9I CCNGG 4 cut(s) 107, 182, 191, 299
MvaI CCWGG 4 cut(s) 107, 182, 191, 299
MwoI GCNNNNNNNGC 5 cut(s) 107, 206, 397, 443, 452
NdeII GATC 3 cut(s) 63, 193, 270
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 179, 277
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 2 cut(s) 156, 411
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 240, 375, 489
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 7 cut(s) 132, 135, 173, 436, 448, 470, 473
PleI GAGTC 2 cut(s) 142, 247
PpsI GAGTC 2 cut(s) 142, 247
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 4 cut(s) 105, 180, 189, 297
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 4 cut(s) 105, 180, 189, 297
PspN4I GGNNCC 2 cut(s) 179, 277
PspPI GGNCC 2 cut(s) 109, 295
RsaI GTAC 2 cut(s) 188, 430
RsaNI GTAC 2 cut(s) 187, 429
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 7 cut(s) 131, 134, 172, 435, 447, 469, 472
Sau3AI GATC 3 cut(s) 63, 193, 270
Sau96I GGNCC 2 cut(s) 109, 295
SchI GAGTC 2 cut(s) 142, 247
ScrFI CCNGG 4 cut(s) 107, 182, 191, 299
SduI GDGCHC 1 cut(s) 306
SetI ASST 8 cut(s) 80, 186, 192, 246, 306, 353, 457, 504
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 11
SfuI TTCGAA 2 cut(s) 156, 411
Sse9I AATT 1 cut(s) 392
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 6 cut(s) 171, 419, 444, 447, 468, 471
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 105, 180, 189, 297
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 15, 493
TaiI ACGT 1 cut(s) 246
TaqI TCGA 7 cut(s) 156, 162, 216, 339, 369, 411, 462
TaqII GACCGA 1 cut(s) 79
TasI AATT 1 cut(s) 392
TatI WGTACW 1 cut(s) 428
TauI GCSGC 4 cut(s) 174, 449, 471, 474
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 130, 133, 434
Tsp45I GTSAC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 194
XmiI GTMKAC 2 cut(s) 93, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.