Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

44451855 .. 44452528

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCACTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCAATCAGCGCCGTGGCCGGAGCATCGCCAGCCCTAAAATCCAGTAACAAAACAAGCATTGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTTCCCAAAGGCATCACAGAATATTCCCTCGACGATTCCAGCGGTGAATTCCGGGTGTTTTTTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATTAGGTCCGGAACTCTTCCACTGGTTTCTGGTGAAAGGTATCCGAGTCGATGTGCCCAGCTCCGGCCTCATTTACTTCAATGTCAGCGTTGTCGATGAGCAGTTCTCTTTGTCCCTCTTCGAGTCTCCGCCCGATTGCACTGCTCTTGATCCTTATGATCCCTCCTCTCATTCTTCTTCTTCCAATTCCCCATCTGAGCTCAAGCTCAAGGATGGGCGTAGGGATTGTGGTGGTGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

174

Amino Acids

18.36

Weight (kDa)

5.11

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 84	3.9e-08	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	3 cut(s)	228, 263, 407
AclWI	GGATC	2 cut(s)	422, 431
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	24, 358
AluBI	AGCT	3 cut(s)	339, 478, 484
AluI	AGCT	3 cut(s)	339, 478, 484
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	422, 431
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	3 cut(s)	78, 181, 343
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	74, 267
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	146, 242, 322
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	185, 478, 485
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciVI	GTATCC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	2 cut(s)	63, 263
BlsI	GCNGC	2 cut(s)	64, 264
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	3 cut(s)	95, 153, 207
BmuI	ACTGGG	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpuEI	CTTGAG	2 cut(s)	464, 470
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	12, 105, 305
BseAI	TCCGGA	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	31, 75
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	12, 105, 305
BseRI	GAGGAG	4 cut(s)	44, 147, 150, 433
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	2 cut(s)	253, 335
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	3 cut(s)	80, 183, 345
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	81, 160, 238, 287, 342
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	80, 183, 345
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	336, 480
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	151, 427, 436, 514
BspACI	CCGC	3 cut(s)	228, 263, 407
BspANI	GGCC	3 cut(s)	80, 183, 345
BspCNI	CTCAG	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	422, 431
BsrI	ACTGG	3 cut(s)	12, 105, 305
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	4 cut(s)	151, 427, 436, 514
Bst6I	CTCTTC	2 cut(s)	299, 401
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 267
BstKTI	GATC	4 cut(s)	154, 430, 439, 517
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	151, 427, 436, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	80, 183, 345
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	5, 298, 417
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	74, 267
Cfr13I	GGNCC	1 cut(s)	284
CviJI	RGCY	9 cut(s)	39, 80, 95, 183, 257, 339, 345, 478, 484
CviKI_1	RGCY	9 cut(s)	39, 80, 95, 183, 257, 339, 345, 478, 484
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	4 cut(s)	153, 429, 438, 516
DpnII	GATC	4 cut(s)	151, 427, 436, 514
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	299, 401
EarI	CTCTTC	2 cut(s)	299, 401
EciI	GGCGGA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	480
FaiI	YATR	2 cut(s)	168, 435
FaqI	GGGAC	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	63, 263
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	63, 263
GlaI	GCGC	2 cut(s)	73, 266
GluI	GCNGC	2 cut(s)	63, 263
GsaI	CCCAGC	2 cut(s)	257, 339
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	80, 183, 345
HapII	CCGG	5 cut(s)	81, 160, 238, 287, 342
HhaI	GCGC	2 cut(s)	74, 267
Hin6I	GCGC	2 cut(s)	72, 265
HinP1I	GCGC	2 cut(s)	72, 265
HinfI	GANTC	3 cut(s)	221, 324, 401
HpaII	CCGG	5 cut(s)	81, 160, 238, 287, 342
HphI	GGTGA	3 cut(s)	146, 242, 322
Hpy188I	TCNGA	2 cut(s)	323, 475
Hpy188III	TCNNGA	3 cut(s)	275, 287, 425
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	122, 197
HpyCH4V	TGCA	3 cut(s)	16, 65, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	474
HspAI	GCGC	2 cut(s)	72, 265
Kpn2I	TCCGGA	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	151, 427, 436, 514
LmnI	GCTCC	3 cut(s)	57, 83, 344
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	3 cut(s)	95, 153, 207
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	4 cut(s)	153, 429, 438, 516
MboI	GATC	4 cut(s)	151, 427, 436, 514
MboII	GAAGA	6 cut(s)	38, 286, 388, 444, 447, 450
MhlI	GDGCHC	2 cut(s)	336, 480
MluCI	AATT	3 cut(s)	233, 278, 463
MlyI	GAGTC	2 cut(s)	333, 410
MroI	TCCGGA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	5 cut(s)	81, 160, 238, 287, 342
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	4 cut(s)	151, 427, 436, 514
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	64, 264
PleI	GAGTC	2 cut(s)	332, 409
PpsI	GAGTC	2 cut(s)	332, 409
Psp124BI	GAGCTC	1 cut(s)	480
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	253, 335
PspPI	GGNCC	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	480
SatI	GCNGC	2 cut(s)	63, 263
Sau3AI	GATC	4 cut(s)	151, 427, 436, 514
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	333, 410
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	336, 480
SetI	ASST	6 cut(s)	159, 286, 319, 341, 480, 486
SfaNI	GCATC	3 cut(s)	95, 153, 207
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	479, 485
SmoI	CTYRAG	2 cut(s)	479, 485
Sse9I	AATT	3 cut(s)	233, 278, 463
SsiI	CCGC	3 cut(s)	228, 263, 407
SspI	AATATT	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	5 cut(s)	216, 274, 327, 372, 399
TasI	AATT	3 cut(s)	233, 278, 463
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	3 cut(s)	12, 305, 424
TseI	GCWGC	1 cut(s)	62
TspRI	CASTG	3 cut(s)	12, 305, 424
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.