Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

47015101 .. 47015574

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCATTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATCGGCGCCGTGGCCGGAGCATCGCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTTCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGTCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCGACTTATCCGGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCTGGTGAAAGGTATCCGAGTCGATGTGCCCAGCTCCGGCCTCATTTACTTCAATGTCGGCGTTGTCGATAAGCAGTTCTCTTTGTCCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

157

Amino Acids

16.7

Weight (kDa)

7.83

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	50 - 157	2.6e-32	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	231, 354
AcoI	YGGCCR	2 cut(s)	78, 325
AcsI	RAATTY	1 cut(s)	236
AcyI	GRCGYC	2 cut(s)	72, 348
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	24, 301, 430
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	310, 355
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	5 cut(s)	78, 93, 184, 325, 415
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	74, 269
AspS9I	GGNCC	2 cut(s)	94, 286
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	149, 394
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	310, 355
BfaI	CTAG	1 cut(s)	472
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	63, 232
BlsI	GCNGC	2 cut(s)	64, 233
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	94, 286
BmiI	GGNNCC	2 cut(s)	73, 96
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	4 cut(s)	95, 129, 156, 210
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	72, 348
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	31, 75
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	5 cut(s)	44, 147, 150, 153, 179
BseSI	GKGCMC	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	2 cut(s)	255, 407
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	2 cut(s)	69, 328
BshFI	GGCC	5 cut(s)	80, 95, 186, 327, 417
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	69, 328
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	7 cut(s)	81, 92, 163, 241, 289, 345, 414
BslFI	GGGAC	2 cut(s)	325, 448
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	310, 355
BsmBI	CGTCTC	2 cut(s)	310, 355
BsmFI	GGGAC	2 cut(s)	325, 448
BsnI	GGCC	5 cut(s)	80, 95, 186, 327, 417
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	66, 154
BspACI	CCGC	2 cut(s)	231, 354
BspANI	GGCC	5 cut(s)	80, 95, 186, 327, 417
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	73, 96
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	2 cut(s)	66, 154
BssNI	GRCGYC	2 cut(s)	72, 348
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	72, 348
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 269
BstKTI	GATC	2 cut(s)	69, 157
BstMAI	GTCTC	2 cut(s)	310, 355
BstMBI	GATC	2 cut(s)	66, 154
BstMCI	CGRYCG	2 cut(s)	69, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	80, 95, 186, 327, 417
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	74, 269
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	94, 286
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	8 cut(s)	39, 80, 95, 186, 259, 327, 411, 417
CviKI_1	RGCY	8 cut(s)	39, 80, 95, 186, 259, 327, 411, 417
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	357
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	68, 156
DpnII	GATC	2 cut(s)	66, 154
EaeI	YGGCCR	2 cut(s)	78, 325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EclXI	CGGCCG	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	310, 355
FaiI	YATR	1 cut(s)	171
FaqI	GGGAC	2 cut(s)	325, 448
Fnu4HI	GCNGC	2 cut(s)	63, 232
Fsp4HI	GCNGC	2 cut(s)	63, 232
FspBI	CTAG	1 cut(s)	472
GlaI	GCGC	2 cut(s)	73, 268
GluI	GCNGC	2 cut(s)	63, 232
GsaI	CCCAGC	2 cut(s)	259, 411
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	80, 95, 186, 327, 417
HapII	CCGG	7 cut(s)	81, 92, 163, 241, 289, 345, 414
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	2 cut(s)	74, 269
Hin1I	GRCGYC	2 cut(s)	72, 348
Hin6I	GCGC	2 cut(s)	72, 267
HinP1I	GCGC	2 cut(s)	72, 267
HinfI	GANTC	4 cut(s)	280, 313, 330, 396
HpaII	CCGG	7 cut(s)	81, 92, 163, 241, 289, 345, 414
HphI	GGTGA	2 cut(s)	149, 394
Hpy188I	TCNGA	2 cut(s)	125, 395
Hpy188III	TCNNGA	2 cut(s)	277, 359
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	72, 348
HspAI	GCGC	2 cut(s)	72, 267
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	66, 154
LmnI	GCTCC	3 cut(s)	57, 83, 416
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	95, 129, 156, 210
MaeI	CTAG	1 cut(s)	472
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	107, 174
MalI	GATC	2 cut(s)	68, 156
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	2 cut(s)	66, 154
MboII	GAAGA	3 cut(s)	38, 358, 460
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	307, 405
MroNI	GCCGGC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	7 cut(s)	81, 92, 163, 241, 289, 345, 414
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NaeI	GCCGGC	1 cut(s)	93
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	66, 154
NgoMIV	GCCGGC	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	73, 96
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 441
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	280, 330
PkrI	GCNGC	2 cut(s)	64, 233
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	2 cut(s)	307, 404
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	2 cut(s)	307, 404
PspEI	GGTNACC	1 cut(s)	174
PspFI	CCCAGC	2 cut(s)	255, 407
PspN4I	GGNNCC	2 cut(s)	73, 96
PspPI	GGNCC	2 cut(s)	94, 286
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SatI	GCNGC	2 cut(s)	63, 232
Sau3AI	GATC	2 cut(s)	66, 154
Sau96I	GGNCC	2 cut(s)	94, 286
SchI	GAGTC	2 cut(s)	307, 405
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	5 cut(s)	162, 288, 306, 391, 413
SfaNI	GCATC	4 cut(s)	95, 129, 156, 210
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	231, 354
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	1 cut(s)	240
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	219, 276, 399, 444
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	280, 330
TseI	GCWGC	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	236
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.