Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

265673 .. 268353

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41510

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGACTGGAATTGCAGGGTCCAAAATCCCTTGTGGGCTTTGTTCTTCTGCTCCTCCTTGCTGTGATCGGCGCCGTGGCCCCCAAATCCAGCAGCAAAGCAAGCATCGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGCTTGCCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTGGACGATTCCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGCTACGATTTCAACGTCTCCGGGACCCTCACTTTCGGCCGAATCGCCGACTTGTCCGGCGTCTCCGCTCAGGAGCTCTTCCTTTGGTTTCCGGTGAAAGGTATCCGAGTGGATGTGCCCAGCTCCGGCCTCATTTACTTCGATGTCGGCGTTGTCGACAAGCAGTTCTCTTTGTCCCTCTTCGAGTCTCCGCCCGATTGCACTGCTCTTGATCCTTCTGATCCCTCCTCCTCTTCTTCTTCTTCTTCCTCCAATTCCCCATCTGAGCTCAACCTCAAGACTCTATCAGAAGATGTTGGGTACAAAGCTGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

192

Amino Acids

20.43

Weight (kDa)

4.84

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	41 - 149	2.7e-34	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	240
AciI	CCGC	5 cut(s)	204, 238, 262, 327, 452
AclWI	GGATC	2 cut(s)	467, 476
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	72, 321
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	359, 386
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	337, 384, 529, 569
AluI	AGCT	4 cut(s)	337, 384, 529, 569
Alw21I	GWGCWC	2 cut(s)	339, 531
Alw26I	GTCTC	3 cut(s)	283, 328, 453
AlwI	GGATC	2 cut(s)	467, 476
AoxI	GGCC	4 cut(s)	78, 157, 298, 388
ApeKI	GCWGC	2 cut(s)	93, 569
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	74, 242
AspS9I	GGNCC	4 cut(s)	20, 79, 259, 285
AsuC2I	CCSGG	2 cut(s)	215, 283
AsuHPI	GGTGA	2 cut(s)	122, 367
AvaII	GGWCC	3 cut(s)	20, 259, 285
BaeGI	GKGCMC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	339, 531
Bbv12I	GWGCWC	2 cut(s)	339, 531
BbvI	GCAGC	2 cut(s)	105, 556
BccI	CCATC	2 cut(s)	161, 529
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	2 cut(s)	215, 283
BcoDI	GTCTC	3 cut(s)	283, 328, 453
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	4 cut(s)	94, 205, 238, 570
BlsI	GCNGC	4 cut(s)	95, 206, 239, 571
Bme1390I	CCNGG	3 cut(s)	191, 215, 283
Bme18I	GGWCC	3 cut(s)	20, 259, 285
BmgT120I	GGNCC	4 cut(s)	20, 79, 259, 285
BmiI	GGNNCC	5 cut(s)	21, 73, 81, 286, 287
BmrFI	CCNGG	3 cut(s)	191, 215, 283
BmsI	GCATC	3 cut(s)	114, 129, 183
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	215, 283
BsaHI	GRCGYC	2 cut(s)	72, 321
BsaJI	CCNNGG	2 cut(s)	75, 189
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 386
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	75, 189
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	359, 386
BseMII	CTCAG	2 cut(s)	344, 516
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	5 cut(s)	44, 126, 152, 478, 481
BseSI	GKGCMC	1 cut(s)	381
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	105, 556
BseYI	CCCAGC	2 cut(s)	228, 380
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	4 cut(s)	80, 159, 300, 390
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	339, 531
BsiSI	CCGG	6 cut(s)	136, 214, 282, 318, 353, 387
BslFI	GGGAC	3 cut(s)	18, 298, 421
BslI	CCNNNNNNNGG	2 cut(s)	359, 386
BsmAI	GTCTC	3 cut(s)	283, 328, 453
BsmBI	CGTCTC	2 cut(s)	283, 328
BsmFI	GGGAC	3 cut(s)	18, 298, 421
BsnI	GGCC	4 cut(s)	80, 159, 300, 390
Bsp1286I	GDGCHC	3 cut(s)	339, 381, 531
Bsp143I	GATC	4 cut(s)	66, 127, 472, 481
BspACI	CCGC	5 cut(s)	204, 238, 262, 327, 452
BspANI	GGCC	4 cut(s)	80, 159, 300, 390
BspCNI	CTCAG	2 cut(s)	343, 517
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	5 cut(s)	21, 73, 81, 286, 287
BspPI	GGATC	2 cut(s)	467, 476
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	75, 189
BssMI	GATC	4 cut(s)	66, 127, 472, 481
BssNI	GRCGYC	2 cut(s)	72, 321
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	3 cut(s)	344, 446, 499
BstACI	GRCGYC	2 cut(s)	72, 321
BstC8I	GCNNGC	2 cut(s)	103, 149
BstDEI	CTNAG	2 cut(s)	330, 525
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 242
BstKTI	GATC	4 cut(s)	69, 130, 475, 484
BstMAI	GTCTC	3 cut(s)	283, 328, 453
BstMBI	GATC	4 cut(s)	66, 127, 472, 481
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	189, 213, 281
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	105, 556
BstZI	CGGCCG	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	80, 159, 300, 390
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	103, 149
CfoI	GCGC	2 cut(s)	74, 242
Cfr13I	GGNCC	4 cut(s)	20, 79, 259, 285
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	562
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	2 cut(s)	330, 525
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	4 cut(s)	68, 129, 474, 483
DpnII	GATC	4 cut(s)	66, 127, 472, 481
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	344, 446, 499
EarI	CTCTTC	3 cut(s)	344, 446, 499
EciI	GGCGGA	1 cut(s)	441
Ecl136II	GAGCTC	2 cut(s)	337, 529
EclXI	CGGCCG	1 cut(s)	298
Eco24I	GRGCYC	2 cut(s)	339, 531
Eco47I	GGWCC	3 cut(s)	20, 259, 285
Eco52I	CGGCCG	1 cut(s)	298
Eco53kI	GAGCTC	2 cut(s)	337, 529
EcoICRI	GAGCTC	2 cut(s)	337, 529
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	339, 531
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	283, 328
FaiI	YATR	2 cut(s)	144, 577
FaqI	GGGAC	3 cut(s)	18, 298, 421
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	94, 205, 238, 570
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	2 cut(s)	339, 531
Fsp4HI	GCNGC	4 cut(s)	94, 205, 238, 570
GlaI	GCGC	2 cut(s)	73, 241
GluI	GCNGC	4 cut(s)	94, 205, 238, 570
GsaI	CCCAGC	2 cut(s)	232, 384
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	80, 159, 300, 390
HapII	CCGG	6 cut(s)	136, 214, 282, 318, 353, 387
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	74, 242
Hin1I	GRCGYC	2 cut(s)	72, 321
Hin6I	GCGC	2 cut(s)	72, 240
HinP1I	GCGC	2 cut(s)	72, 240
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	5 cut(s)	197, 253, 303, 446, 541
HpaII	CCGG	6 cut(s)	136, 214, 282, 318, 353, 387
HphI	GGTGA	2 cut(s)	122, 367
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	110, 368, 481, 526, 550
Hpy188III	TCNNGA	4 cut(s)	250, 332, 470, 538
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	16, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	330, 525
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	72, 321
HspAI	GCGC	2 cut(s)	72, 240
KasI	GGCGCC	1 cut(s)	71
KflI	GGGWCCC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	66, 127, 472, 481
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	3 cut(s)	57, 334, 389
Lsp1109I	GCAGC	2 cut(s)	105, 556
LweI	GCATC	3 cut(s)	114, 129, 183
MaeII	ACGT	1 cut(s)	276
MalI	GATC	4 cut(s)	68, 129, 474, 483
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	4 cut(s)	66, 127, 472, 481
MboII	GAAGA	9 cut(s)	38, 331, 433, 486, 489, 492, 495, 498, 563
MhlI	GDGCHC	3 cut(s)	339, 381, 531
MluCI	AATT	3 cut(s)	11, 209, 514
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	455, 535
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	6 cut(s)	136, 214, 282, 318, 353, 387
MspR9I	CCNGG	3 cut(s)	191, 215, 283
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	215, 283
NdeII	GATC	4 cut(s)	66, 127, 472, 481
NlaIV	GGNNCC	5 cut(s)	21, 73, 81, 286, 287
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 408, 414
PfeI	GAWTC	3 cut(s)	197, 253, 303
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	95, 206, 239, 571
PleI	GAGTC	2 cut(s)	454, 535
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	2 cut(s)	454, 535
PpuMI	RGGWCCY	1 cut(s)	285
Psp124BI	GAGCTC	2 cut(s)	339, 531
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	228, 380
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	5 cut(s)	21, 73, 81, 286, 287
PspPI	GGNCC	4 cut(s)	20, 79, 259, 285
PspPPI	RGGWCCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SacI	GAGCTC	2 cut(s)	339, 531
SalI	GTCGAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	344
SatI	GCNGC	4 cut(s)	94, 205, 238, 570
Sau3AI	GATC	4 cut(s)	66, 127, 472, 481
Sau96I	GGNCC	4 cut(s)	20, 79, 259, 285
SchI	GAGTC	2 cut(s)	455, 535
ScrFI	CCNGG	3 cut(s)	191, 215, 283
SduI	GDGCHC	3 cut(s)	339, 381, 531
SetI	ASST	9 cut(s)	135, 261, 279, 339, 364, 386, 531, 537, 571
SfaNI	GCATC	3 cut(s)	114, 129, 183
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	3 cut(s)	20, 259, 285
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	11, 209, 514
SsiI	CCGC	5 cut(s)	204, 238, 262, 327, 452
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	185
SstI	GAGCTC	2 cut(s)	339, 531
StyD4I	CCNGG	3 cut(s)	189, 213, 281
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	249, 402, 417, 444
TasI	AATT	3 cut(s)	11, 209, 514
TauI	GCSGC	2 cut(s)	207, 240
TfiI	GAWTC	3 cut(s)	197, 253, 303
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	93, 569
TspDTI	ATGAA	1 cut(s)	564
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	20, 259, 285
XapI	RAATTY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.