Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

13454062 .. 13454532

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG085500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCATTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGTTGCGATCGGCGCAGTGGCCAGAGCATCGCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCGACTTATCCGGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCTGGTGAAAGGTATCCGAGTCGATGTGCCCAGCTCCGGCCTCATTTACTTCAATGTCGGCGTTGTCGATAAGCAGTTCTCTTTGTCCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

156

Amino Acids

16.71

Weight (kDa)

8.76

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 156	4.1e-33	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	228, 262, 351
AcoI	YGGCCR	2 cut(s)	78, 322
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	24, 298, 427
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	307, 352
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	5 cut(s)	78, 93, 181, 322, 412
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	74, 266
AspS9I	GGNCC	2 cut(s)	94, 283
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	146, 391
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	80
BccI	CCATC	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	307, 352
BfaI	CTAG	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	229, 262
BlsI	GCNGC	2 cut(s)	230, 263
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	94, 283
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	4 cut(s)	95, 129, 153, 207
Bpu10I	CCTNAGC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	4 cut(s)	44, 147, 150, 176
BseSI	GKGCMC	1 cut(s)	405
BseX3I	CGGCCG	1 cut(s)	322
BseYI	CCCAGC	2 cut(s)	252, 404
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	69, 325
BshFI	GGCC	5 cut(s)	80, 95, 183, 324, 414
BsiEI	CGRYCG	2 cut(s)	69, 325
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	6 cut(s)	92, 160, 238, 286, 342, 411
BslFI	GGGAC	2 cut(s)	322, 445
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	307, 352
BsmBI	CGTCTC	2 cut(s)	307, 352
BsmFI	GGGAC	2 cut(s)	322, 445
BsnI	GGCC	5 cut(s)	80, 95, 183, 324, 414
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	66, 151
BspACI	CCGC	3 cut(s)	228, 262, 351
BspANI	GGCC	5 cut(s)	80, 95, 183, 324, 414
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	66, 151
BssNI	GRCGYC	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	74, 266
BstKTI	GATC	2 cut(s)	69, 154
BstMAI	GTCTC	2 cut(s)	307, 352
BstMBI	GATC	2 cut(s)	66, 151
BstMCI	CGRYCG	2 cut(s)	69, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	5 cut(s)	80, 95, 183, 324, 414
BtgZI	GCGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	74, 266
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	94, 283
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	8 cut(s)	39, 80, 95, 183, 256, 324, 408, 414
CviKI_1	RGCY	8 cut(s)	39, 80, 95, 183, 256, 324, 408, 414
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	68, 153
DpnII	GATC	2 cut(s)	66, 151
EaeI	YGGCCR	2 cut(s)	78, 322
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EclXI	CGGCCG	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
Esp3I	CGTCTC	2 cut(s)	307, 352
FaiI	YATR	1 cut(s)	168
FaqI	GGGAC	2 cut(s)	322, 445
Fnu4HI	GCNGC	2 cut(s)	229, 262
Fsp4HI	GCNGC	2 cut(s)	229, 262
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	2 cut(s)	73, 265
GluI	GCNGC	2 cut(s)	229, 262
GsaI	CCCAGC	2 cut(s)	256, 408
HaeIII	GGCC	5 cut(s)	80, 95, 183, 324, 414
HapII	CCGG	6 cut(s)	92, 160, 238, 286, 342, 411
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	74, 266
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	2 cut(s)	72, 264
HinP1I	GCGC	2 cut(s)	72, 264
HinfI	GANTC	5 cut(s)	221, 277, 310, 327, 393
HpaII	CCGG	6 cut(s)	92, 160, 238, 286, 342, 411
HphI	GGTGA	2 cut(s)	146, 391
Hpy188I	TCNGA	2 cut(s)	125, 392
Hpy188III	TCNNGA	2 cut(s)	274, 356
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	2 cut(s)	72, 264
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	66, 151
LmnI	GCTCC	2 cut(s)	57, 413
LweI	GCATC	4 cut(s)	95, 129, 153, 207
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	2 cut(s)	68, 153
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	2 cut(s)	66, 151
MboII	GAAGA	3 cut(s)	38, 355, 457
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	233
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	304, 402
Mox20I	TGGCCA	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	6 cut(s)	92, 160, 238, 286, 342, 411
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	66, 151
NgoMIV	GCCGGC	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 438
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	221, 277, 327
PkrI	GCNGC	2 cut(s)	230, 263
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	2 cut(s)	304, 401
PpsI	GAGTC	2 cut(s)	304, 401
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	252, 404
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	94, 283
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	229, 262
Sau3AI	GATC	2 cut(s)	66, 151
Sau96I	GGNCC	2 cut(s)	94, 283
SchI	GAGTC	2 cut(s)	304, 402
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	5 cut(s)	159, 285, 303, 388, 410
SfaNI	GCATC	4 cut(s)	95, 129, 153, 207
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	228, 262, 351
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	216, 273, 396, 441
TasI	AATT	1 cut(s)	233
TauI	GCSGC	2 cut(s)	231, 264
TfiI	GAWTC	3 cut(s)	221, 277, 327
TscAI	CASTG	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.