Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

15703524 .. 15703904

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCACTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATCGGCGCTATGGCCGGAGCATCTCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTTCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCAAGGAATATTCCCTCGACGATTCCAGCGGCGAATTCCGAGTGTTTCTGCCCCAGCCTTGCCTGCCAAGCTCGAGAATCAGGTCTGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCGACTTATCCGGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

126

Amino Acids

12.91

Weight (kDa)

9.51

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 88	6.1e-10	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	2 cut(s)	228, 350
AcoI	YGGCCR	2 cut(s)	78, 321
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	24, 297
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	306, 351
Ama87I	CYCGRG	2 cut(s)	32, 271
AoxI	GGCC	4 cut(s)	78, 93, 181, 321
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	2 cut(s)	32, 271
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	306, 351
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	63, 229
BlsI	GCNGC	2 cut(s)	64, 230
BmeT110I	CYCGRG	2 cut(s)	32, 271
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	95, 129, 153, 207
BmuI	ACTGGG	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	12, 105
BseDI	CCNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	12, 105
BseRI	GAGGAG	4 cut(s)	44, 147, 150, 176
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	69, 324
BshFI	GGCC	4 cut(s)	80, 95, 183, 323
BsiEI	CGRYCG	2 cut(s)	69, 324
BsiHKCI	CYCGRG	2 cut(s)	32, 271
BsiSI	CCGG	4 cut(s)	81, 92, 341, 376
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	306, 351
BsmBI	CGTCTC	2 cut(s)	306, 351
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	80, 95, 183, 323
BsoBI	CYCGRG	2 cut(s)	32, 271
Bsp143I	GATC	2 cut(s)	66, 151
BspACI	CCGC	2 cut(s)	228, 350
BspANI	GGCC	4 cut(s)	80, 95, 183, 323
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	12, 105
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	66, 151
BssNI	GRCGYC	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	353
BstEII	GGTNACC	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	69, 154
BstMAI	GTCTC	2 cut(s)	306, 351
BstMBI	GATC	2 cut(s)	66, 151
BstMCI	CGRYCG	2 cut(s)	69, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 92, 262, 267
BstPI	GGTNACC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	80, 95, 183, 323
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	288
CviJI	RGCY	7 cut(s)	39, 80, 95, 183, 256, 270, 323
CviKI_1	RGCY	7 cut(s)	39, 80, 95, 183, 256, 270, 323
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	68, 153
DpnII	GATC	2 cut(s)	66, 151
EaeI	YGGCCR	2 cut(s)	78, 321
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	321
Eco88I	CYCGRG	2 cut(s)	32, 271
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
Esp3I	CGTCTC	2 cut(s)	306, 351
FaiI	YATR	2 cut(s)	77, 168
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	63, 229
Fsp4HI	GCNGC	2 cut(s)	63, 229
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	63, 229
GsaI	CCCAGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	80, 95, 183, 323
HapII	CCGG	4 cut(s)	81, 92, 341, 376
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	4 cut(s)	221, 276, 309, 326
HpaII	CCGG	4 cut(s)	81, 92, 341, 376
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	125, 239
Hpy188III	TCNNGA	2 cut(s)	273, 355
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	122, 167
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 92, 262, 267
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	344
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	66, 151
LmnI	GCTCC	2 cut(s)	57, 83
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	95, 129, 153, 207
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	2 cut(s)	68, 153
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	2 cut(s)	66, 151
MboII	GAAGA	2 cut(s)	38, 354
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	41, 65, 125, 128, 131, 194, 197, 224, 376
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	4 cut(s)	81, 92, 341, 376
MwoI	GCNNNNNNNGC	4 cut(s)	71, 92, 262, 267
NdeII	GATC	2 cut(s)	66, 151
NlaIV	GGNNCC	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	221, 276, 326
PkrI	GCNGC	2 cut(s)	64, 230
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	94
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	63, 229
Sau3AI	GATC	2 cut(s)	66, 151
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	303
SetI	ASST	4 cut(s)	159, 272, 284, 302
SfaNI	GCATC	4 cut(s)	95, 129, 153, 207
Sfr274I	CTCGAG	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	2 cut(s)	228, 350
SspI	AATATT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	216, 272
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	221, 276, 326
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	62
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.