Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

10580213 .. 10580503

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCACTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATCGACGCCATGGCCGGAGCATCGCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGAAGGAGGAGGAAGCATCTATGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACTATTCCAGCGGCGAATTCCGGGTGTTTCTACCCCAGCCTTGCTGCGCCAAGTTCGAGAATCAGGTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

96

Amino Acids

10.12

Weight (kDa)

6.54

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 93	5.1e-11	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	78, 93, 181
ApeKI	GCWGC	2 cut(s)	62, 261
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	94, 283
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	49, 248
BccI	CCATC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	63, 229, 262
BlsI	GCNGC	3 cut(s)	64, 230, 263
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	94, 283
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	95, 129, 153, 207
BmuI	ACTGGG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaWI	WCCGGW	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	12, 105
BseDI	CCNNGG	2 cut(s)	31, 75
BseNI	ACTGG	2 cut(s)	12, 105
BseRI	GAGGAG	3 cut(s)	44, 150, 176
BseXI	GCAGC	2 cut(s)	49, 248
BseYI	CCCAGC	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	80, 95, 183
BsiEI	CGRYCG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	81, 92, 160, 238, 286
BsnI	GGCC	3 cut(s)	80, 95, 183
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	66, 151
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	80, 95, 183
BspLI	GGNNCC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	12, 105
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	2 cut(s)	66, 151
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	69, 154
BstMBI	GATC	2 cut(s)	66, 151
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	49, 248
BsuRI	GGCC	3 cut(s)	80, 95, 183
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	94, 283
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	39, 80, 95, 183, 256
CviKI_1	RGCY	5 cut(s)	39, 80, 95, 183, 256
DpnI	GATC	2 cut(s)	68, 153
DpnII	GATC	2 cut(s)	66, 151
EaeI	YGGCCR	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 150, 168
FatI	CATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	63, 229, 262
Fsp4HI	GCNGC	3 cut(s)	63, 229, 262
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	63, 229, 262
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	80, 95, 183
HapII	CCGG	5 cut(s)	81, 92, 160, 238, 286
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	5 cut(s)	81, 92, 160, 238, 286
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	264
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	66, 151
LmnI	GCTCC	2 cut(s)	57, 83
LpnPI	CCDG	9 cut(s)	2, 94, 105, 118, 173, 238, 251, 266, 266
Lsp1109I	GCAGC	2 cut(s)	49, 248
LweI	GCATC	4 cut(s)	95, 129, 153, 207
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	2 cut(s)	68, 153
MboI	GATC	2 cut(s)	66, 151
MboII	GAAGA	2 cut(s)	38, 140
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	8 cut(s)	41, 65, 128, 131, 167, 194, 197, 224
MroNI	GCCGGC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	5 cut(s)	81, 92, 160, 238, 286
MspR9I	CCNGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	66, 151
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	64, 230, 263
Ple19I	CGATCG	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	94, 283
PvuI	CGATCG	1 cut(s)	69
SatI	GCNGC	3 cut(s)	63, 229, 262
Sau3AI	GATC	2 cut(s)	66, 151
Sau96I	GGNCC	2 cut(s)	94, 283
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	2 cut(s)	159, 285
SfaNI	GCATC	4 cut(s)	95, 129, 153, 207
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	69, 216, 273
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	2 cut(s)	62, 261
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.