Rmu_sc0011591.1_g000002

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011591.1
OG0000944
Physical Location & Seq
Forward (+)
10473 .. 12199
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011591.1_g000002.1.cds

Sequence Viewer

Length: 357 bp
atgcgatctagactcctcaaggtagtcgagctcgaccttgttgtgatcggcgtcgtggccagggcatcgccagcccccaaatccagcaacaaaacaagcatcgaagaaggaggaagaggaggaaacatctacgatcacctccggcaatatggcttacccattggccttctccccaaaggcatcatggaatattccctcaacgattccagtggagaattccaggtgtttctgccccagccttgcctcgccaagttcgaaaatcaggtccgatatgatttcaatgtttccaggactcacaattttggagaatcgcatccggcatctccgctcaggatcccttcctttggtttccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

9.25

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 328
AciI CCGC 1 cut(s) 326
AclWI GGATC 2 cut(s) 328, 341
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 3 cut(s) 59, 219, 287
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 2 cut(s) 328, 341
AoxI GGCC 2 cut(s) 57, 163
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 265
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BciT130I CCWGG 3 cut(s) 61, 221, 289
BfaI CTAG 1 cut(s) 9
Bme1390I CCNGG 3 cut(s) 61, 221, 289
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 3 cut(s) 61, 221, 289
BmsI GCATC 5 cut(s) 74, 108, 189, 322, 329
Bpu10I CCTNAGC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 3 cut(s) 61, 221, 289
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 5, 132
BseYI CCCAGC 1 cut(s) 234
BshFI GGCC 2 cut(s) 59, 165
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 3 cut(s) 142, 317, 352
BslI CCNNNNNNNGG 1 cut(s) 344
BsnI GGCC 2 cut(s) 59, 165
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 5, 45, 133, 333
BspACI CCGC 1 cut(s) 326
BspANI GGCC 2 cut(s) 59, 165
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 335
BspPI GGATC 2 cut(s) 328, 341
BspT104I TTCGAA 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 5, 45, 133, 333
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 61, 221, 289
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 4 cut(s) 8, 48, 136, 336
BstMBI GATC 4 cut(s) 5, 45, 133, 333
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 3 cut(s) 61, 221, 289
BstSCI CCNGG 3 cut(s) 59, 219, 287
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 2 cut(s) 59, 165
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 40
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 31, 59, 74, 153, 165, 238
CviKI_1 RGCY 6 cut(s) 31, 59, 74, 153, 165, 238
DdeI CTNAG 1 cut(s) 329
DpnI GATC 4 cut(s) 7, 47, 135, 335
DpnII GATC 4 cut(s) 5, 45, 133, 333
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 59, 219, 287
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 150, 185, 273
FatI CATG 1 cut(s) 183
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 33
FspBI CTAG 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 59, 165
HapII CCGG 3 cut(s) 142, 317, 352
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 187
HinfI GANTC 4 cut(s) 12, 203, 292, 308
HpaII CCGG 3 cut(s) 142, 317, 352
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 9, 331
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 101, 176, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 4 cut(s) 5, 45, 133, 333
LweI GCATC 5 cut(s) 74, 108, 189, 322, 329
MaeI CTAG 1 cut(s) 9
MalI GATC 4 cut(s) 7, 47, 135, 335
MbiI CCGCTC 1 cut(s) 328
MboI GATC 4 cut(s) 5, 45, 133, 333
MboII GAAGA 2 cut(s) 116, 126
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 2 cut(s) 215, 298
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 6, 286
MnlI CCTC 7 cut(s) 26, 104, 110, 113, 149, 206, 254
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 142, 317, 352
MspR9I CCNGG 3 cut(s) 61, 221, 289
MvaI CCWGG 3 cut(s) 61, 221, 289
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 4 cut(s) 5, 45, 133, 333
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 335
NspV TTCGAA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 203, 308
PfoI TCCNGGA 1 cut(s) 287
PleI GAGTC 2 cut(s) 6, 286
PpsI GAGTC 2 cut(s) 6, 286
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 59, 219, 287
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 3 cut(s) 59, 219, 287
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 333
SacI GAGCTC 1 cut(s) 33
Sau3AI GATC 4 cut(s) 5, 45, 133, 333
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 2 cut(s) 6, 286
ScrFI CCNGG 3 cut(s) 61, 221, 289
SduI GDGCHC 1 cut(s) 33
SetI ASST 6 cut(s) 24, 33, 39, 141, 225, 267
SfaNI GCATC 5 cut(s) 74, 108, 189, 322, 329
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 215, 298
SsiI CCGC 1 cut(s) 326
SspI AATATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 59, 219, 287
TaqI TCGA 4 cut(s) 27, 33, 102, 255
TasI AATT 2 cut(s) 215, 298
TfiI GAWTC 2 cut(s) 203, 308
TscAI CASTG 1 cut(s) 214
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.