Rorug06G0148800

Protein of unknown function, DUF538

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
21280056 .. 21281801
1746 bp
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UTR
Exon/CDS
Intron
Rorug06G0148800.1

Sequence Viewer

Length: 471 bp
ATGGTTCAAGTGCTTCAAAGGGAAGGGAGTCAGTTGACTACTTGGAAAATGATGTTGACACCTTTCACATTGAATGATTGGGATGTTAGCTGTGGTGAATTCTATGGACTACCTCTATTTGAGGACTTGAATACTAGAAAAGAAACTACATCTGGATCTGCCAAGTCAACCAGAAGAAAGACTGAGACTTCTACAACAGCCCCTAGAGAAAGATACAGTACGTCTTTCCTTATAACAATATGTGAAACAACTTCAGTTGCAAAGGTGGGGTCATTAAGAAGTTATCGAACAAAAAGGGGAAGCGTGCCTCCATCATGTAAAGAGATACATCTTTTTTGGAGAACATTCTTAATATCCCACAATACTGCCTCTACTAATACAACTGAAAAAGAAAAAGATTCAGCTGAAAATTCTAAGTTTGGCAGCTCAGCAGTATGTATGGTGGAGAGTGGACACCAGCAAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

8.96

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 2 cut(s) 98, 409
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 4 cut(s) 8, 17, 73, 130
AluBI AGCT 3 cut(s) 90, 404, 426
AluI AGCT 3 cut(s) 90, 404, 426
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 2 cut(s) 98, 409
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsuHPI GGTGA 1 cut(s) 107
BbvI GCAGC 1 cut(s) 435
BccI CCATC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 135, 204
BisI GCNGC 1 cut(s) 424
BlpI GCTNAGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 427
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 174, 441
BseXI GCAGC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 155
Bsp1720I GCTNAGC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 175, 440
BspPI GGATC 1 cut(s) 163
BssMI GATC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 305, 462
BstDEI CTNAG 3 cut(s) 183, 414, 427
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 305, 462
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 315
CviJI RGCY 4 cut(s) 90, 200, 404, 426
CviKI_1 RGCY 4 cut(s) 90, 200, 404, 426
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 3 cut(s) 183, 414, 427
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 98
FaeI CATG 1 cut(s) 318
FaiI YATR 6 cut(s) 105, 233, 241, 316, 436, 440
FatI CATG 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 424
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 424
FspBI CTAG 2 cut(s) 135, 204
GluI GCNGC 1 cut(s) 424
Hin1II CATG 1 cut(s) 318
HincII GTYRAC 3 cut(s) 36, 57, 168
HindII GTYRAC 3 cut(s) 36, 57, 168
HinfI GANTC 2 cut(s) 28, 398
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 4 cut(s) 36, 57, 168, 452
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 4 cut(s) 36, 57, 168, 452
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 183, 414, 427
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 2 cut(s) 138, 184
Lsp1109I GCAGC 1 cut(s) 435
MaeI CTAG 2 cut(s) 135, 204
MaeII ACGT 1 cut(s) 221
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 1 cut(s) 186
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 98, 409, 466
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 4 cut(s) 115, 123, 318, 379
MseI TTAA 3 cut(s) 275, 350, 469
MspA1I CMGCKG 1 cut(s) 404
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 318
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 425
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 233
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 275, 350, 469
SatI GCNGC 1 cut(s) 424
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 37
SetI ASST 7 cut(s) 64, 92, 115, 224, 267, 406, 428
Sse9I AATT 3 cut(s) 98, 409, 466
SspMI CTAG 2 cut(s) 135, 204
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 286
TasI AATT 3 cut(s) 98, 409, 466
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 3 cut(s) 275, 350, 469
Tru9I TTAA 3 cut(s) 275, 350, 469
TseI GCWGC 1 cut(s) 423
XapI RAATTY 2 cut(s) 98, 409
XspI CTAG 2 cut(s) 135, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.