Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

30520398 .. 30523017

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G362800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGCGGTCCTTGTCCAAAATCCCTCATTTTCCCTCAATTTCCCAAACAATCCCTTAATTTGGAAAGATGGGTTTTGATCCTCTTCCTAGTGGTTGTGGTTGTGGTCCTCCCCCTCCCCACCACGGCCACCGCTGTAAGTCCGTCGTCTAGCATCTACGACCACCTGCGGCAGCAGGGCCTTCCTATGGGGATCCTCCCAAAAGGCATAACGGAATATTCTCTAAACGGCAGCACTGGAGAATTCCGGGTGTTGCTAGCGCAGCCGTGCCACGCCAAGTTCGAGAACCAGGTGCTCTACGATTTCAACGTCTCGGGCGTTCTGTCTTTCGGGCGAATCGCCAACTTATCGGGGGTGTCGGCTCAGGAACTGTTCCTGTGGTTTCCAGTGAAGGGGATCAGAGTGGATGTGCCGAGCTCTGGCCTCATTTACTTCGATGTCGGCGTTGTTGACAAGCAGTTCTCTTTGTCCCTCTTCGAATCACCCCCTGATTGCACCGCCGTTGACCCTTCTGATCCCAACTTCATTCCAGCTGCTCACCACACCGACCACTATTCTCATTCCCCATCTGGGTCGTCGTCTAAGATTGAATCACAGAATCTTGGGGATGAAGTCAGTCAGAAAAGTGAACTGAGGGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

216

Amino Acids

23.35

Weight (kDa)

5.61

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	174
AciI	CCGC	4 cut(s)	6, 132, 169, 498
AclWI	GGATC	5 cut(s)	73, 187, 200, 404, 509
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	242
AfiI	CCNNNNNNNGG	6 cut(s)	61, 124, 187, 392, 419, 570
AgsI	TTSAA	2 cut(s)	307, 590
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	417, 533
AluI	AGCT	2 cut(s)	417, 533
Alw21I	GWGCWC	2 cut(s)	297, 419
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	5 cut(s)	73, 187, 200, 404, 509
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	3 cut(s)	126, 178, 421
ApeKI	GCWGC	4 cut(s)	172, 231, 262, 533
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	8, 106, 178
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	474, 530
AsuII	TTCGAA	1 cut(s)	477
AsuNHI	GCTAGC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	8, 106
BamHI	GGATCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	2 cut(s)	297, 419
BbvI	GCAGC	4 cut(s)	184, 243, 274, 520
BccI	CCATC	2 cut(s)	63, 574
BceAI	ACGGC	4 cut(s)	141, 244, 250, 485
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	3 cut(s)	89, 150, 257
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	5 cut(s)	170, 173, 232, 263, 534
BlsI	GCNGC	5 cut(s)	171, 174, 233, 264, 535
Bme1390I	CCNGG	2 cut(s)	248, 290
Bme18I	GGWCC	2 cut(s)	8, 106
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	3 cut(s)	8, 106, 178
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	248, 290
BmsI	GCATC	1 cut(s)	162
BmtI	GCTAGC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 124, 187, 392, 419, 570
Bse1I	ACTGG	2 cut(s)	241, 386
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	412, 613
BseLI	CCNNNNNNNGG	6 cut(s)	61, 124, 187, 392, 419, 570
BseMII	CTCAG	2 cut(s)	377, 623
BseNI	ACTGG	2 cut(s)	241, 386
BseXI	GCAGC	4 cut(s)	184, 243, 274, 520
BshFI	GGCC	3 cut(s)	128, 180, 423
BsiHKAI	GWGCWC	2 cut(s)	297, 419
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	6 cut(s)	61, 124, 187, 392, 419, 570
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	128, 180, 423
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	297, 419
Bsp143I	GATC	4 cut(s)	78, 192, 396, 514
BspACI	CCGC	4 cut(s)	6, 132, 169, 498
BspANI	GGCC	3 cut(s)	128, 180, 423
BspCNI	CTCAG	2 cut(s)	376, 624
BspLI	GGNNCC	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	174
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	5 cut(s)	73, 187, 200, 404, 509
BspT104I	TTCGAA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	241, 386
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	4 cut(s)	78, 192, 396, 514
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	2 cut(s)	89, 479
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	363, 582, 632
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	412, 613
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	81, 195, 399, 517
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	78, 192, 396, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	246, 288
BstV1I	GCAGC	4 cut(s)	184, 243, 274, 520
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	128, 180, 423
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	412, 613
BtsIMutI	CAGTG	2 cut(s)	234, 393
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	8, 106, 178
CsiI	ACCWGGT	1 cut(s)	288
CviJI	RGCY	8 cut(s)	128, 180, 265, 362, 417, 423, 533, 638
CviKI_1	RGCY	8 cut(s)	128, 180, 265, 362, 417, 423, 533, 638
DdeI	CTNAG	3 cut(s)	363, 582, 632
DpnI	GATC	4 cut(s)	80, 194, 398, 516
DpnII	GATC	4 cut(s)	78, 192, 396, 514
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	89, 479
EarI	CTCTTC	2 cut(s)	89, 479
Ecl136II	GAGCTC	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	8, 106
Eco53kI	GAGCTC	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	316
FaiI	YATR	3 cut(s)	188, 209, 646
FaqI	GGGAC	1 cut(s)	454
Fnu4HI	GCNGC	5 cut(s)	170, 173, 232, 263, 534
FokI	GGATG	2 cut(s)	419, 620
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	5 cut(s)	170, 173, 232, 263, 534
FspBI	CTAG	3 cut(s)	89, 150, 257
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	5 cut(s)	170, 173, 232, 263, 534
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	128, 180, 423
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	2 cut(s)	451, 505
HindII	GTYRAC	2 cut(s)	451, 505
HinfI	GANTC	4 cut(s)	336, 479, 590, 598
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	474, 530
Hpy166II	GTNNAC	3 cut(s)	451, 505, 629
Hpy188I	TCNGA	3 cut(s)	401, 514, 621
Hpy188III	TCNNGA	2 cut(s)	283, 365
Hpy8I	GTNNAC	3 cut(s)	451, 505, 629
Hpy99I	CGWCG	2 cut(s)	148, 580
HpyAV	CCTTC	3 cut(s)	191, 385, 519
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	363, 582, 632
HpySE526I	ACGT	1 cut(s)	309
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	4 cut(s)	78, 192, 396, 514
Lsp1109I	GCAGC	4 cut(s)	184, 243, 274, 520
LweI	GCATC	1 cut(s)	162
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	3 cut(s)	89, 150, 257
MaeII	ACGT	1 cut(s)	309
MalI	GATC	4 cut(s)	80, 194, 398, 516
MboI	GATC	4 cut(s)	78, 192, 396, 514
MboII	GAAGA	3 cut(s)	76, 466, 633
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	297, 419
MluCI	AATT	3 cut(s)	38, 58, 242
MnlI	CCTC	9 cut(s)	35, 45, 92, 119, 125, 206, 434, 482, 627
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	2 cut(s)	134, 533
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	248, 290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	4 cut(s)	78, 192, 396, 514
NheI	GCTAGC	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	194
NmeAIII	GCCGAG	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	477
PaqCI	CACCTGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	4 cut(s)	279, 306, 315, 441
PfeI	GAWTC	4 cut(s)	336, 479, 590, 598
PkrI	GCNGC	5 cut(s)	171, 174, 233, 264, 535
Psp124BI	GAGCTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	3 cut(s)	8, 106, 178
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	5 cut(s)	170, 173, 232, 263, 534
Sau3AI	GATC	4 cut(s)	78, 192, 396, 514
Sau96I	GGNCC	3 cut(s)	8, 106, 178
ScrFI	CCNGG	2 cut(s)	248, 290
SduI	GDGCHC	2 cut(s)	297, 419
SetI	ASST	5 cut(s)	168, 294, 312, 419, 535
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	2 cut(s)	8, 106
Sse9I	AATT	3 cut(s)	38, 58, 242
SsiI	CCGC	4 cut(s)	6, 132, 169, 498
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	3 cut(s)	89, 150, 257
SstI	GAGCTC	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	246, 288
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	282, 435, 477
TasI	AATT	3 cut(s)	38, 58, 242
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	336, 479, 590, 598
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	241, 393
TseI	GCWGC	4 cut(s)	172, 231, 262, 533
TspDTI	ATGAA	3 cut(s)	514, 624, 633
TspGWI	ACGGA	2 cut(s)	132, 227
TspRI	CASTG	2 cut(s)	241, 393
VpaK11BI	GGWCC	2 cut(s)	8, 106
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	3 cut(s)	89, 150, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.