Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

2771982 .. 2772374

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCATTGGGATTGCAGGGTTCAAAATCCCTCGGAGTCTTTGTTCTTCTACTCCTCCTTGCTGCTATCGGCGCCGTGGCCGGAGCATCGCCAGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGGTTACCCATCAGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGTGAATTCCGGGTGTTTCTGCCCCAACCTTGCCGCGCCAAGTTCGAGAATCAGGTTCGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCGACTTATCCGGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTTTGGTGAAAGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

7.86

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 130	6e-24	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	228, 262, 351
AcoI	YGGCCR	2 cut(s)	78, 322
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	2 cut(s)	72, 345
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	24, 298
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
Alw26I	GTCTC	2 cut(s)	307, 352
AoxI	GGCC	2 cut(s)	78, 322
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	74, 266
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	146, 242, 391
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	307, 352
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	63, 262
BlsI	GCNGC	2 cut(s)	64, 263
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	4 cut(s)	95, 129, 153, 207
Bpu10I	CCTNAGC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	2 cut(s)	72, 345
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	31, 75
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	4 cut(s)	44, 147, 150, 176
BseX3I	CGGCCG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	80, 324
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	325
BsiSI	CCGG	4 cut(s)	81, 160, 238, 342
BslFI	GGGAC	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	307, 352
BsmBI	CGTCTC	2 cut(s)	307, 352
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	80, 324
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	3 cut(s)	228, 262, 351
BspANI	GGCC	2 cut(s)	80, 324
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	2 cut(s)	72, 345
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	2 cut(s)	72, 345
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 266
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	2 cut(s)	307, 352
BstMBI	GATC	1 cut(s)	151
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	80, 324
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	74, 266
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	4 cut(s)	80, 95, 183, 324
CviKI_1	RGCY	4 cut(s)	80, 95, 183, 324
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	354
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	78, 322
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EclXI	CGGCCG	1 cut(s)	322
Eco52I	CGGCCG	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	307, 352
FaiI	YATR	1 cut(s)	168
FaqI	GGGAC	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	63, 262
Fsp4HI	GCNGC	2 cut(s)	63, 262
GlaI	GCGC	2 cut(s)	73, 265
GluI	GCNGC	2 cut(s)	63, 262
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	80, 324
HapII	CCGG	4 cut(s)	81, 160, 238, 342
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	74, 266
Hin1I	GRCGYC	2 cut(s)	72, 345
Hin6I	GCGC	2 cut(s)	72, 264
HinP1I	GCGC	2 cut(s)	72, 264
HinfI	GANTC	5 cut(s)	36, 221, 277, 310, 327
HpaII	CCGG	4 cut(s)	81, 160, 238, 342
HphI	GGTGA	3 cut(s)	146, 242, 391
Hpy188I	TCNGA	3 cut(s)	35, 125, 392
Hpy188III	TCNNGA	2 cut(s)	274, 356
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	72, 345
HspAI	GCGC	2 cut(s)	72, 264
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	95, 129, 153, 207
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	1 cut(s)	153
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	38, 355
MluCI	AATT	1 cut(s)	233
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	45, 304
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	4 cut(s)	81, 160, 238, 342
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	221, 277, 327
PkrI	GCNGC	2 cut(s)	64, 263
PleI	GAGTC	2 cut(s)	44, 304
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	2 cut(s)	44, 304
PspEI	GGTNACC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	63, 262
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	45, 304
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	5 cut(s)	159, 259, 285, 303, 388
SfaNI	GCATC	4 cut(s)	95, 129, 153, 207
SfoI	GGCGCC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	228, 262, 351
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	216, 273
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	221, 277, 327
TseI	GCWGC	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	218
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.